EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSRBIG00000039208 (Gene tree)
Gene ID: -
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 27186 bases
Position: chrMCGX01007621.1:485339-512524
Accession: 108542139
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000030733	CSD	PF00313.22	6.4e-26	1	1
ENSRBIP00000030732	CSD	PF00313.22	7.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000054695	YBX3-202	4924	XM_017892010	ENSRBIP00000030733	302 (aa)	XP_017747499	A0A2K6M4N0
ENSRBIT00000054694	YBX3-201	5131	XM_017892008	ENSRBIP00000030732	371 (aa)	XP_017747497	A0A2K6M4N7

Gene Model

Click here to download ENSRBIG00000039208's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000039208's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRBIG00000039208	YBX3	81	51.104	ENSRBIG00000029840	-	97	53.741

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000039208	YBX3	100	98.118	ENSG00000060138	YBX3	100	98.118	Homo_sapiens
ENSRBIG00000039208	YBX3	92	88.235	ENSAMEG00000009393	YBX3	95	89.412	Ailuropoda_melanoleuca
ENSRBIG00000039208	YBX3	77	64.685	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSRBIG00000039208	YBX3	98	87.692	ENSANAG00000033366	-	93	87.692	Aotus_nancymaae
ENSRBIG00000039208	YBX3	100	96.765	ENSANAG00000024492	-	100	98.101	Aotus_nancymaae
ENSRBIG00000039208	YBX3	100	81.137	ENSBTAG00000009663	YBX3	100	77.519	Bos_taurus
ENSRBIG00000039208	YBX3	100	95.687	ENSCJAG00000021660	-	100	95.687	Callithrix_jacchus
ENSRBIG00000039208	YBX3	77	90.476	ENSCJAG00000033824	-	98	93.243	Callithrix_jacchus
ENSRBIG00000039208	YBX3	78	92.014	ENSCAFG00000013401	YBX3	100	92.202	Canis_familiaris
ENSRBIG00000039208	YBX3	100	86.667	ENSCAFG00020006412	YBX3	100	85.333	Canis_lupus_dingo
ENSRBIG00000039208	YBX3	100	81.137	ENSCHIG00000010863	YBX3	100	81.941	Capra_hircus
ENSRBIG00000039208	YBX3	77	94.425	ENSTSYG00000004204	-	88	94.425	Carlito_syrichta
ENSRBIG00000039208	YBX3	100	75.166	ENSTSYG00000035821	-	97	80.357	Carlito_syrichta
ENSRBIG00000039208	YBX3	77	86.411	ENSCAPG00000015039	YBX3	93	86.411	Cavia_aperea
ENSRBIG00000039208	YBX3	79	87.372	ENSCPOG00000011329	YBX3	86	87.372	Cavia_porcellus
ENSRBIG00000039208	YBX3	100	96.040	ENSCCAG00000016469	YBX3	100	96.040	Cebus_capucinus
ENSRBIG00000039208	YBX3	100	97.855	ENSCATG00000034411	YBX3	100	97.855	Cercocebus_atys
ENSRBIG00000039208	YBX3	77	86.760	ENSCLAG00000016030	YBX3	94	86.760	Chinchilla_lanigera
ENSRBIG00000039208	YBX3	100	98.391	ENSCSAG00000008744	YBX3	100	98.391	Chlorocebus_sabaeus
ENSRBIG00000039208	YBX3	94	82.081	ENSCHOG00000011988	YBX3	77	80.925	Choloepus_hoffmanni
ENSRBIG00000039208	YBX3	78	79.725	ENSCPBG00000014147	YBX3	81	78.840	Chrysemys_picta_bellii
ENSRBIG00000039208	YBX3	61	54.011	ENSCING00000010654	yb1/2/3	73	49.767	Ciona_intestinalis
ENSRBIG00000039208	YBX3	85	98.730	ENSCANG00000036801	YBX3	100	98.780	Colobus_angolensis_palliatus
ENSRBIG00000039208	YBX3	100	84.906	ENSCGRG00001016148	Ybx3	100	83.827	Cricetulus_griseus_chok1gshd
ENSRBIG00000039208	YBX3	77	90.411	ENSCGRG00000004563	Ybx3	98	89.041	Cricetulus_griseus_crigri
ENSRBIG00000039208	YBX3	90	80.588	ENSDORG00000009103	Ybx3	81	90.244	Dipodomys_ordii
ENSRBIG00000039208	YBX3	77	84.912	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSRBIG00000039208	YBX3	100	85.175	ENSEASG00005014726	YBX3	100	84.367	Equus_asinus_asinus
ENSRBIG00000039208	YBX3	100	88.140	ENSECAG00000013777	YBX3	100	88.140	Equus_caballus
ENSRBIG00000039208	YBX3	77	92.254	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSRBIG00000039208	YBX3	100	91.475	ENSFCAG00000027748	YBX3	100	92.131	Felis_catus
ENSRBIG00000039208	YBX3	72	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSRBIG00000039208	YBX3	79	82.155	ENSFDAG00000021192	YBX3	92	83.275	Fukomys_damarensis
ENSRBIG00000039208	YBX3	100	69.055	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSRBIG00000039208	YBX3	78	79.725	ENSGAGG00000017780	YBX3	77	83.857	Gopherus_agassizii
ENSRBIG00000039208	YBX3	100	97.855	ENSGGOG00000001352	YBX3	100	97.855	Gorilla_gorilla
ENSRBIG00000039208	YBX3	81	75.490	ENSHGLG00000014798	-	86	76.768	Heterocephalus_glaber_female
ENSRBIG00000039208	YBX3	74	79.273	ENSHGLG00000015495	-	80	76.557	Heterocephalus_glaber_female
ENSRBIG00000039208	YBX3	72	88.532	ENSHGLG00100003589	YBX3	87	88.532	Heterocephalus_glaber_male
ENSRBIG00000039208	YBX3	93	84.638	ENSSTOG00000032577	-	100	82.480	Ictidomys_tridecemlineatus
ENSRBIG00000039208	YBX3	77	86.063	ENSSTOG00000002108	-	88	86.063	Ictidomys_tridecemlineatus
ENSRBIG00000039208	YBX3	80	68.687	ENSJJAG00000014239	Ybx3	95	86.047	Jaculus_jaculus
ENSRBIG00000039208	YBX3	100	91.375	ENSLAFG00000017247	YBX3	100	91.375	Loxodonta_africana
ENSRBIG00000039208	YBX3	100	98.118	ENSMFAG00000039369	YBX3	100	98.118	Macaca_fascicularis
ENSRBIG00000039208	YBX3	88	98.462	ENSMMUG00000022469	YBX3	100	98.462	Macaca_mulatta
ENSRBIG00000039208	YBX3	100	97.849	ENSMNEG00000045109	YBX3	100	97.849	Macaca_nemestrina
ENSRBIG00000039208	YBX3	92	85.131	ENSMLEG00000033618	YBX3	79	98.606	Mandrillus_leucophaeus
ENSRBIG00000039208	YBX3	70	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSRBIG00000039208	YBX3	88	87.768	ENSMAUG00000012185	Ybx3	91	90.102	Mesocricetus_auratus
ENSRBIG00000039208	YBX3	100	90.054	ENSMICG00000038002	-	100	90.591	Microcebus_murinus
ENSRBIG00000039208	YBX3	100	74.172	ENSMICG00000031459	-	100	69.868	Microcebus_murinus
ENSRBIG00000039208	YBX3	84	88.746	ENSMOCG00000016291	Ybx3	95	90.785	Microtus_ochrogaster
ENSRBIG00000039208	YBX3	77	82.292	ENSMODG00000018248	YBX3	91	82.986	Monodelphis_domestica
ENSRBIG00000039208	YBX3	100	84.097	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.558	Mus_caroli
ENSRBIG00000039208	YBX3	100	84.097	ENSMUSG00000030189	Ybx3	100	83.558	Mus_musculus
ENSRBIG00000039208	YBX3	100	84.636	MGP_PahariEiJ_G0022709	Ybx3	100	84.097	Mus_pahari
ENSRBIG00000039208	YBX3	100	84.367	MGP_SPRETEiJ_G0029994	Ybx3	100	83.827	Mus_spretus
ENSRBIG00000039208	YBX3	100	78.740	ENSMPUG00000011810	YBX3	100	78.215	Mustela_putorius_furo
ENSRBIG00000039208	YBX3	71	92.937	ENSMLUG00000007476	YBX3	100	91.078	Myotis_lucifugus
ENSRBIG00000039208	YBX3	80	85.522	ENSNGAG00000000710	Ybx3	90	83.628	Nannospalax_galili
ENSRBIG00000039208	YBX3	89	94.880	ENSNLEG00000034844	YBX3	100	92.958	Nomascus_leucogenys
ENSRBIG00000039208	YBX3	82	80.592	ENSODEG00000017957	YBX3	86	82.594	Octodon_degus
ENSRBIG00000039208	YBX3	80	87.119	ENSOCUG00000001889	YBX3	85	87.031	Oryctolagus_cuniculus
ENSRBIG00000039208	YBX3	100	88.918	ENSOGAG00000013245	YBX3	100	88.654	Otolemur_garnettii
ENSRBIG00000039208	YBX3	70	98.980	ENSOARG00000020919	YBX3	99	82.373	Ovis_aries
ENSRBIG00000039208	YBX3	100	91.398	ENSPPAG00000039068	YBX3	100	90.860	Pan_paniscus
ENSRBIG00000039208	YBX3	100	91.176	ENSPPRG00000005859	YBX3	100	91.803	Panthera_pardus
ENSRBIG00000039208	YBX3	77	92.632	ENSPTIG00000005322	YBX3	81	91.986	Panthera_tigris_altaica
ENSRBIG00000039208	YBX3	100	97.594	ENSPTRG00000004681	YBX3	100	97.594	Pan_troglodytes
ENSRBIG00000039208	YBX3	100	98.118	ENSPANG00000010280	YBX3	100	98.118	Papio_anubis
ENSRBIG00000039208	YBX3	72	84.259	ENSPSIG00000009247	YBX3	95	100.000	Pelodiscus_sinensis
ENSRBIG00000039208	YBX3	82	87.500	ENSPEMG00000010391	-	84	91.071	Peromyscus_maniculatus_bairdii
ENSRBIG00000039208	YBX3	87	87.654	ENSPEMG00000012132	-	92	91.126	Peromyscus_maniculatus_bairdii
ENSRBIG00000039208	YBX3	70	80.385	ENSPCIG00000029949	YBX3	100	78.462	Phascolarctos_cinereus
ENSRBIG00000039208	YBX3	100	98.113	ENSPPYG00000004279	YBX3	100	98.113	Pongo_abelii
ENSRBIG00000039208	YBX3	80	100.000	ENSPCAG00000001397	YBX3	86	100.000	Procavia_capensis
ENSRBIG00000039208	YBX3	50	70.732	ENSPCOG00000011663	YBX3	100	86.873	Propithecus_coquereli
ENSRBIG00000039208	YBX3	100	78.133	ENSPVAG00000006740	YBX3	77	89.655	Pteropus_vampyrus
ENSRBIG00000039208	YBX3	100	85.175	ENSRNOG00000005480	Ybx3	100	84.097	Rattus_norvegicus
ENSRBIG00000039208	YBX3	100	99.730	ENSRROG00000029638	YBX3	100	99.730	Rhinopithecus_roxellana
ENSRBIG00000039208	YBX3	92	87.464	ENSSBOG00000030573	YBX3	86	96.564	Saimiri_boliviensis_boliviensis
ENSRBIG00000039208	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	79.725	Sarcophilus_harrisii
ENSRBIG00000039208	YBX3	100	87.664	ENSSSCG00000000633	YBX3	100	89.239	Sus_scrofa
ENSRBIG00000039208	YBX3	71	97.143	ENSTGUG00000012047	YBX3	75	97.143	Taeniopygia_guttata
ENSRBIG00000039208	YBX3	100	86.523	ENSTBEG00000012570	YBX3	81	94.198	Tupaia_belangeri
ENSRBIG00000039208	YBX3	71	84.586	ENSTTRG00000008045	YBX3	100	84.586	Tursiops_truncatus
ENSRBIG00000039208	YBX3	75	87.770	ENSUAMG00000016662	YBX3	100	88.129	Ursus_americanus
ENSRBIG00000039208	YBX3	77	91.228	ENSUMAG00000016118	YBX3	94	91.289	Ursus_maritimus
ENSRBIG00000039208	YBX3	58	100.000	ENSVPAG00000000876	YBX3	100	72.183	Vicugna_pacos
ENSRBIG00000039208	YBX3	75	88.489	ENSVVUG00000004956	YBX3	100	88.849	Vulpes_vulpes
ENSRBIG00000039208	YBX3	73	71.622	ENSXETG00000016239	ybx3	90	65.179	Xenopus_tropicalis