EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRBIG00000041227 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Rhinopithecus_bieti
Status: putative
Strand: Minus strand
Length: 123800 bases
Position: chrMCGX01004642.1:77591-201390
Accession: 108535875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRBIP00000035612	XRN_N	PF03159.18	5.5e-96	1	1
ENSRBIP00000035602	XRN_N	PF03159.18	5.6e-96	1	1
ENSRBIP00000035609	XRN_N	PF03159.18	5.6e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRBIT00000059610	XRN1-203	5079	-	ENSRBIP00000035612	1692 (aa)	-	A0A2K6MIP5
ENSRBIT00000059607	XRN1-202	5100	-	ENSRBIP00000035609	1699 (aa)	-	A0A2K6MIJ8
ENSRBIT00000059598	XRN1-201	5118	XM_017882269	ENSRBIP00000035602	1705 (aa)	XP_017737758	A0A2K6MIN4

Gene Model

Click here to download ENSRBIG00000041227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRBIG00000041227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRBIG00000041227	XRN1	100	97.071	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSRBIG00000041227	XRN1	95	72.705	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSRBIG00000041227	XRN1	100	91.239	ENSAMEG00000012538	XRN1	100	91.239	Ailuropoda_melanoleuca
ENSRBIG00000041227	XRN1	95	72.417	ENSACIG00000001057	xrn1	94	72.579	Amphilophus_citrinellus
ENSRBIG00000041227	XRN1	100	60.889	ENSAOCG00000014097	xrn1	95	69.478	Amphiprion_ocellaris
ENSRBIG00000041227	XRN1	100	60.451	ENSAPEG00000006620	xrn1	98	62.682	Amphiprion_percula
ENSRBIG00000041227	XRN1	94	71.122	ENSATEG00000009752	xrn1	97	71.111	Anabas_testudineus
ENSRBIG00000041227	XRN1	99	75.784	ENSAPLG00000004905	XRN1	100	75.784	Anas_platyrhynchos
ENSRBIG00000041227	XRN1	100	72.072	ENSACAG00000004985	XRN1	100	72.072	Anolis_carolinensis
ENSRBIG00000041227	XRN1	100	96.134	ENSANAG00000029013	XRN1	99	97.352	Aotus_nancymaae
ENSRBIG00000041227	XRN1	100	60.240	ENSACLG00000004806	xrn1	96	61.780	Astatotilapia_calliptera
ENSRBIG00000041227	XRN1	99	60.403	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSRBIG00000041227	XRN1	100	91.974	ENSBTAG00000011524	XRN1	100	91.857	Bos_taurus
ENSRBIG00000041227	XRN1	71	38.859	WBGene00012730	xrn-1	80	38.982	Caenorhabditis_elegans
ENSRBIG00000041227	XRN1	100	96.075	ENSCJAG00000001872	XRN1	100	96.075	Callithrix_jacchus
ENSRBIG00000041227	XRN1	100	92.794	ENSCAFG00000007783	XRN1	100	92.794	Canis_familiaris
ENSRBIG00000041227	XRN1	100	91.450	ENSCAFG00020009120	XRN1	99	94.000	Canis_lupus_dingo
ENSRBIG00000041227	XRN1	99	89.532	ENSCHIG00000019192	XRN1	99	89.416	Capra_hircus
ENSRBIG00000041227	XRN1	100	93.569	ENSTSYG00000002705	XRN1	100	93.569	Carlito_syrichta
ENSRBIG00000041227	XRN1	56	76.783	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSRBIG00000041227	XRN1	100	96.661	ENSCCAG00000034800	XRN1	99	98.574	Cebus_capucinus
ENSRBIG00000041227	XRN1	100	98.535	ENSCATG00000041794	XRN1	100	98.535	Cercocebus_atys
ENSRBIG00000041227	XRN1	100	87.478	ENSCLAG00000001451	XRN1	99	96.355	Chinchilla_lanigera
ENSRBIG00000041227	XRN1	100	98.594	ENSCSAG00000011265	XRN1	100	98.594	Chlorocebus_sabaeus
ENSRBIG00000041227	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSRBIG00000041227	XRN1	71	45.016	ENSCSAVG00000008584	-	98	44.809	Ciona_savignyi
ENSRBIG00000041227	XRN1	100	98.653	ENSCANG00000037495	XRN1	100	98.653	Colobus_angolensis_palliatus
ENSRBIG00000041227	XRN1	100	87.002	ENSCGRG00001019411	Xrn1	99	96.038	Cricetulus_griseus_chok1gshd
ENSRBIG00000041227	XRN1	100	87.002	ENSCGRG00000012464	Xrn1	99	96.038	Cricetulus_griseus_crigri
ENSRBIG00000041227	XRN1	95	67.259	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSRBIG00000041227	XRN1	67	67.368	ENSCVAG00000013089	xrn1	99	71.781	Cyprinodon_variegatus
ENSRBIG00000041227	XRN1	99	62.816	ENSDARG00000091652	xrn1	98	79.747	Danio_rerio
ENSRBIG00000041227	XRN1	100	86.516	ENSDORG00000013833	Xrn1	100	86.458	Dipodomys_ordii
ENSRBIG00000041227	XRN1	75	39.860	FBgn0020261	pcm	76	39.614	Drosophila_melanogaster
ENSRBIG00000041227	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSRBIG00000041227	XRN1	100	92.443	ENSEASG00005002687	XRN1	99	96.038	Equus_asinus_asinus
ENSRBIG00000041227	XRN1	100	92.443	ENSECAG00000008301	XRN1	100	92.443	Equus_caballus
ENSRBIG00000041227	XRN1	92	82.991	ENSEEUG00000011323	XRN1	92	82.991	Erinaceus_europaeus
ENSRBIG00000041227	XRN1	100	61.241	ENSELUG00000000169	xrn1	94	63.193	Esox_lucius
ENSRBIG00000041227	XRN1	100	89.110	ENSFCAG00000027589	XRN1	99	95.824	Felis_catus
ENSRBIG00000041227	XRN1	100	74.372	ENSFALG00000007021	XRN1	100	74.428	Ficedula_albicollis
ENSRBIG00000041227	XRN1	100	88.402	ENSFDAG00000020494	XRN1	99	96.197	Fukomys_damarensis
ENSRBIG00000041227	XRN1	84	68.201	ENSGMOG00000006396	xrn1	80	68.201	Gadus_morhua
ENSRBIG00000041227	XRN1	100	74.676	ENSGALG00000002706	XRN1	100	74.676	Gallus_gallus
ENSRBIG00000041227	XRN1	100	59.656	ENSGACG00000014328	xrn1	96	61.313	Gasterosteus_aculeatus
ENSRBIG00000041227	XRN1	95	77.512	ENSGAGG00000017535	XRN1	98	78.873	Gopherus_agassizii
ENSRBIG00000041227	XRN1	100	97.305	ENSGGOG00000008047	XRN1	100	97.305	Gorilla_gorilla
ENSRBIG00000041227	XRN1	100	60.093	ENSHBUG00000005908	xrn1	98	72.485	Haplochromis_burtoni
ENSRBIG00000041227	XRN1	100	89.677	ENSHGLG00000014476	XRN1	99	96.830	Heterocephalus_glaber_female
ENSRBIG00000041227	XRN1	100	89.677	ENSHGLG00100015130	XRN1	99	96.830	Heterocephalus_glaber_male
ENSRBIG00000041227	XRN1	97	69.866	ENSHCOG00000014062	xrn1	96	70.016	Hippocampus_comes
ENSRBIG00000041227	XRN1	99	62.162	ENSIPUG00000015229	xrn1	96	64.183	Ictalurus_punctatus
ENSRBIG00000041227	XRN1	100	90.993	ENSSTOG00000013552	XRN1	99	97.306	Ictidomys_tridecemlineatus
ENSRBIG00000041227	XRN1	98	86.358	ENSJJAG00000010863	Xrn1	99	93.871	Jaculus_jaculus
ENSRBIG00000041227	XRN1	94	62.000	ENSKMAG00000021356	xrn1	94	75.738	Kryptolebias_marmoratus
ENSRBIG00000041227	XRN1	100	59.194	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSRBIG00000041227	XRN1	100	68.995	ENSLACG00000009020	XRN1	97	70.442	Latimeria_chalumnae
ENSRBIG00000041227	XRN1	100	65.170	ENSLOCG00000007944	xrn1	98	65.669	Lepisosteus_oculatus
ENSRBIG00000041227	XRN1	63	95.978	ENSLAFG00000015426	XRN1	100	95.978	Loxodonta_africana
ENSRBIG00000041227	XRN1	100	98.594	ENSMFAG00000032599	XRN1	100	98.594	Macaca_fascicularis
ENSRBIG00000041227	XRN1	100	98.653	ENSMMUG00000014038	XRN1	100	98.653	Macaca_mulatta
ENSRBIG00000041227	XRN1	100	98.477	ENSMNEG00000034217	XRN1	100	98.477	Macaca_nemestrina
ENSRBIG00000041227	XRN1	94	70.955	ENSMAMG00000013219	xrn1	94	77.113	Mastacembelus_armatus
ENSRBIG00000041227	XRN1	100	59.886	ENSMZEG00005015099	xrn1	96	61.698	Maylandia_zebra
ENSRBIG00000041227	XRN1	99	74.593	ENSMGAG00000006333	XRN1	100	74.593	Meleagris_gallopavo
ENSRBIG00000041227	XRN1	100	93.805	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSRBIG00000041227	XRN1	58	95.087	ENSMOCG00000008665	Xrn1	99	95.087	Microtus_ochrogaster
ENSRBIG00000041227	XRN1	100	82.205	ENSMODG00000021236	XRN1	100	81.914	Monodelphis_domestica
ENSRBIG00000041227	XRN1	100	57.496	ENSMALG00000004098	xrn1	100	56.977	Monopterus_albus
ENSRBIG00000041227	XRN1	96	95.261	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSRBIG00000041227	XRN1	100	86.251	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSRBIG00000041227	XRN1	100	85.962	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSRBIG00000041227	XRN1	100	86.251	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSRBIG00000041227	XRN1	100	93.146	ENSMPUG00000012040	XRN1	100	93.146	Mustela_putorius_furo
ENSRBIG00000041227	XRN1	100	88.857	ENSMLUG00000016885	XRN1	100	88.741	Myotis_lucifugus
ENSRBIG00000041227	XRN1	58	91.284	ENSNGAG00000023964	Xrn1	99	91.574	Nannospalax_galili
ENSRBIG00000041227	XRN1	100	97.364	ENSNLEG00000004726	XRN1	100	97.364	Nomascus_leucogenys
ENSRBIG00000041227	XRN1	76	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSRBIG00000041227	XRN1	79	84.640	ENSOPRG00000007337	-	78	84.640	Ochotona_princeps
ENSRBIG00000041227	XRN1	100	61.108	ENSONIG00000016673	xrn1	99	64.645	Oreochromis_niloticus
ENSRBIG00000041227	XRN1	92	77.827	ENSOANG00000006735	XRN1	100	77.701	Ornithorhynchus_anatinus
ENSRBIG00000041227	XRN1	100	89.857	ENSOCUG00000001861	XRN1	100	89.742	Oryctolagus_cuniculus
ENSRBIG00000041227	XRN1	100	61.009	ENSORLG00000013005	xrn1	96	62.088	Oryzias_latipes
ENSRBIG00000041227	XRN1	100	60.842	ENSORLG00020005559	xrn1	96	62.329	Oryzias_latipes_hni
ENSRBIG00000041227	XRN1	100	60.615	ENSORLG00015022523	xrn1	89	72.298	Oryzias_latipes_hsok
ENSRBIG00000041227	XRN1	93	72.661	ENSOMEG00000015397	xrn1	99	72.661	Oryzias_melastigma
ENSRBIG00000041227	XRN1	100	90.867	ENSOGAG00000000170	XRN1	100	90.867	Otolemur_garnettii
ENSRBIG00000041227	XRN1	99	92.317	ENSOARG00000006343	XRN1	99	92.199	Ovis_aries
ENSRBIG00000041227	XRN1	100	97.188	ENSPPAG00000010180	XRN1	100	97.188	Pan_paniscus
ENSRBIG00000041227	XRN1	100	92.920	ENSPPRG00000007125	XRN1	100	92.920	Panthera_pardus
ENSRBIG00000041227	XRN1	100	92.979	ENSPTIG00000021081	XRN1	100	92.979	Panthera_tigris_altaica
ENSRBIG00000041227	XRN1	100	97.305	ENSPTRG00000015482	XRN1	100	97.305	Pan_troglodytes
ENSRBIG00000041227	XRN1	100	98.535	ENSPANG00000010638	XRN1	100	98.535	Papio_anubis
ENSRBIG00000041227	XRN1	100	76.528	ENSPSIG00000018050	XRN1	100	76.642	Pelodiscus_sinensis
ENSRBIG00000041227	XRN1	57	77.394	ENSPMGG00000002648	xrn1	98	78.493	Periophthalmus_magnuspinnatus
ENSRBIG00000041227	XRN1	58	95.563	ENSPEMG00000020610	Xrn1	99	95.563	Peromyscus_maniculatus_bairdii
ENSRBIG00000041227	XRN1	65	50.802	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSRBIG00000041227	XRN1	100	81.469	ENSPCIG00000028735	XRN1	99	89.841	Phascolarctos_cinereus
ENSRBIG00000041227	XRN1	91	64.574	ENSPFOG00000013932	xrn1	99	64.955	Poecilia_formosa
ENSRBIG00000041227	XRN1	91	63.268	ENSPLAG00000021653	xrn1	99	64.168	Poecilia_latipinna
ENSRBIG00000041227	XRN1	89	64.230	ENSPMEG00000003076	xrn1	95	64.744	Poecilia_mexicana
ENSRBIG00000041227	XRN1	100	60.272	ENSPREG00000021147	xrn1	100	59.439	Poecilia_reticulata
ENSRBIG00000041227	XRN1	100	97.071	ENSPPYG00000014172	XRN1	100	97.071	Pongo_abelii
ENSRBIG00000041227	XRN1	91	81.736	ENSPCAG00000005638	XRN1	100	81.736	Procavia_capensis
ENSRBIG00000041227	XRN1	100	94.204	ENSPCOG00000013089	XRN1	99	96.999	Propithecus_coquereli
ENSRBIG00000041227	XRN1	96	92.201	ENSPVAG00000016265	XRN1	96	92.201	Pteropus_vampyrus
ENSRBIG00000041227	XRN1	96	71.203	ENSPNYG00000010570	xrn1	94	71.259	Pundamilia_nyererei
ENSRBIG00000041227	XRN1	99	60.241	ENSPNAG00000023531	xrn1	96	61.608	Pygocentrus_nattereri
ENSRBIG00000041227	XRN1	100	86.771	ENSRNOG00000042951	Xrn1	100	86.713	Rattus_norvegicus
ENSRBIG00000041227	XRN1	67	54.496	YGL173C	XRN1	81	34.513	Saccharomyces_cerevisiae
ENSRBIG00000041227	XRN1	100	96.016	ENSSBOG00000029561	XRN1	100	96.016	Saimiri_boliviensis_boliviensis
ENSRBIG00000041227	XRN1	99	81.727	ENSSHAG00000016207	XRN1	100	81.479	Sarcophilus_harrisii
ENSRBIG00000041227	XRN1	100	60.679	ENSSFOG00015024211	xrn1	97	62.448	Scleropages_formosus
ENSRBIG00000041227	XRN1	94	72.456	ENSSMAG00000016534	xrn1	95	72.456	Scophthalmus_maximus
ENSRBIG00000041227	XRN1	90	72.172	ENSSDUG00000010306	xrn1	91	72.019	Seriola_dumerili
ENSRBIG00000041227	XRN1	95	71.736	ENSSLDG00000021543	xrn1	97	71.587	Seriola_lalandi_dorsalis
ENSRBIG00000041227	XRN1	68	85.227	ENSSARG00000007741	-	83	85.227	Sorex_araneus
ENSRBIG00000041227	XRN1	100	77.093	ENSTGUG00000008498	XRN1	100	77.151	Taeniopygia_guttata
ENSRBIG00000041227	XRN1	100	58.837	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSRBIG00000041227	XRN1	96	68.526	ENSTNIG00000017615	xrn1	96	60.204	Tetraodon_nigroviridis
ENSRBIG00000041227	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.400	Tupaia_belangeri
ENSRBIG00000041227	XRN1	100	88.694	ENSTTRG00000012914	XRN1	100	88.459	Tursiops_truncatus
ENSRBIG00000041227	XRN1	100	92.213	ENSUAMG00000001608	XRN1	99	94.000	Ursus_americanus
ENSRBIG00000041227	XRN1	100	94.087	ENSUMAG00000013625	XRN1	100	94.087	Ursus_maritimus
ENSRBIG00000041227	XRN1	100	90.275	ENSVPAG00000004690	XRN1	100	90.275	Vicugna_pacos
ENSRBIG00000041227	XRN1	100	93.673	ENSVVUG00000024461	XRN1	99	96.989	Vulpes_vulpes
ENSRBIG00000041227	XRN1	100	69.258	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSRBIG00000041227	XRN1	100	60.610	ENSXCOG00000007917	xrn1	95	62.138	Xiphophorus_couchianus
ENSRBIG00000041227	XRN1	92	71.801	ENSXMAG00000018320	xrn1	92	71.883	Xiphophorus_maculatus