EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000166 (Gene tree)
Gene ID: 317628
Gene Symbol: Apex2
Alias: LOC317628|MGC156784|RGD1565983
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 20591 bases
Position: chrX:23146085-23166675
Accession: 1565983
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060925	Exo_endo_phos	PF03372.23	6.2e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068703	-	1847	-	ENSRNOP00000060925	514 (aa)	-	D3ZPZ3

Gene Model

Click here to download ENSRNOG00000000166's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000166's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000166	Apex2	100	79.344	ENSG00000169188	APEX2	100	79.344	Homo_sapiens
ENSRNOG00000000166	Apex2	99	47.038	ENSAPOG00000005805	apex2	99	46.667	Acanthochromis_polyacanthus
ENSRNOG00000000166	Apex2	100	77.799	ENSAMEG00000003608	APEX2	100	77.799	Ailuropoda_melanoleuca
ENSRNOG00000000166	Apex2	99	46.585	ENSACIG00000010000	apex2	99	46.422	Amphilophus_citrinellus
ENSRNOG00000000166	Apex2	99	46.516	ENSAOCG00000021774	apex2	99	46.749	Amphiprion_ocellaris
ENSRNOG00000000166	Apex2	99	46.690	ENSAPEG00000020890	apex2	93	46.924	Amphiprion_percula
ENSRNOG00000000166	Apex2	99	45.783	ENSATEG00000023600	apex2	99	45.783	Anabas_testudineus
ENSRNOG00000000166	Apex2	99	51.167	ENSACAG00000011201	APEX2	99	51.751	Anolis_carolinensis
ENSRNOG00000000166	Apex2	100	78.764	ENSANAG00000021907	-	100	78.764	Aotus_nancymaae
ENSRNOG00000000166	Apex2	97	69.124	ENSANAG00000020845	-	100	69.124	Aotus_nancymaae
ENSRNOG00000000166	Apex2	99	44.306	ENSAMXG00000007422	apex2	99	44.662	Astyanax_mexicanus
ENSRNOG00000000166	Apex2	100	78.530	ENSBTAG00000013177	APEX2	100	78.530	Bos_taurus
ENSRNOG00000000166	Apex2	100	79.537	ENSCJAG00000016584	APEX2	100	79.537	Callithrix_jacchus
ENSRNOG00000000166	Apex2	100	77.220	ENSCAFG00000014310	APEX2	100	77.220	Canis_familiaris
ENSRNOG00000000166	Apex2	100	78.571	ENSCAFG00020013818	APEX2	100	78.571	Canis_lupus_dingo
ENSRNOG00000000166	Apex2	100	78.917	ENSCHIG00000019916	APEX2	100	78.917	Capra_hircus
ENSRNOG00000000166	Apex2	100	79.264	ENSTSYG00000005612	APEX2	100	79.264	Carlito_syrichta
ENSRNOG00000000166	Apex2	100	71.622	ENSCPOG00000007265	APEX2	100	72.201	Cavia_porcellus
ENSRNOG00000000166	Apex2	96	66.867	ENSCCAG00000025405	-	99	66.867	Cebus_capucinus
ENSRNOG00000000166	Apex2	100	78.764	ENSCATG00000044854	APEX2	100	78.764	Cercocebus_atys
ENSRNOG00000000166	Apex2	100	74.903	ENSCLAG00000017315	APEX2	100	74.903	Chinchilla_lanigera
ENSRNOG00000000166	Apex2	100	78.958	ENSCSAG00000012124	APEX2	100	78.958	Chlorocebus_sabaeus
ENSRNOG00000000166	Apex2	99	47.656	ENSCPBG00000016631	APEX2	99	48.828	Chrysemys_picta_bellii
ENSRNOG00000000166	Apex2	99	41.431	ENSCSAVG00000006052	-	99	41.431	Ciona_savignyi
ENSRNOG00000000166	Apex2	100	78.958	ENSCANG00000003053	APEX2	100	78.958	Colobus_angolensis_palliatus
ENSRNOG00000000166	Apex2	100	88.008	ENSCGRG00001008132	Apex2	100	88.008	Cricetulus_griseus_chok1gshd
ENSRNOG00000000166	Apex2	100	88.008	ENSCGRG00000009667	Apex2	100	88.008	Cricetulus_griseus_crigri
ENSRNOG00000000166	Apex2	99	46.690	ENSCSEG00000019900	apex2	98	46.690	Cynoglossus_semilaevis
ENSRNOG00000000166	Apex2	99	44.310	ENSCVAG00000021583	apex2	99	44.483	Cyprinodon_variegatus
ENSRNOG00000000166	Apex2	99	46.303	ENSDARG00000008472	apex2	99	46.303	Danio_rerio
ENSRNOG00000000166	Apex2	100	76.062	ENSDNOG00000038901	APEX2	100	76.062	Dasypus_novemcinctus
ENSRNOG00000000166	Apex2	99	43.411	ENSEBUG00000015654	apex2	99	43.411	Eptatretus_burgeri
ENSRNOG00000000166	Apex2	100	78.764	ENSEASG00005011694	APEX2	91	78.764	Equus_asinus_asinus
ENSRNOG00000000166	Apex2	100	78.764	ENSECAG00000026921	APEX2	91	78.764	Equus_caballus
ENSRNOG00000000166	Apex2	100	72.885	ENSEEUG00000013172	APEX2	100	72.885	Erinaceus_europaeus
ENSRNOG00000000166	Apex2	99	43.266	ENSELUG00000021417	apex2	99	43.266	Esox_lucius
ENSRNOG00000000166	Apex2	100	75.290	ENSFCAG00000021990	APEX2	100	75.290	Felis_catus
ENSRNOG00000000166	Apex2	100	75.869	ENSFDAG00000008076	APEX2	100	75.869	Fukomys_damarensis
ENSRNOG00000000166	Apex2	99	41.459	ENSFHEG00000021411	apex2	99	41.815	Fundulus_heteroclitus
ENSRNOG00000000166	Apex2	63	55.500	ENSGMOG00000019681	apex2	89	55.500	Gadus_morhua
ENSRNOG00000000166	Apex2	99	44.483	ENSGAFG00000005829	apex2	99	44.737	Gambusia_affinis
ENSRNOG00000000166	Apex2	61	61.702	ENSGACG00000012307	apex2	94	52.632	Gasterosteus_aculeatus
ENSRNOG00000000166	Apex2	86	47.312	ENSGAGG00000011520	APEX2	85	47.577	Gopherus_agassizii
ENSRNOG00000000166	Apex2	100	78.958	ENSGGOG00000002056	APEX2	100	78.958	Gorilla_gorilla
ENSRNOG00000000166	Apex2	99	46.972	ENSHBUG00000009938	apex2	99	46.972	Haplochromis_burtoni
ENSRNOG00000000166	Apex2	100	76.062	ENSHGLG00000000273	APEX2	100	76.062	Heterocephalus_glaber_female
ENSRNOG00000000166	Apex2	99	47.655	ENSHCOG00000010165	apex2	99	47.655	Hippocampus_comes
ENSRNOG00000000166	Apex2	99	43.390	ENSIPUG00000000352	APEX2	99	43.898	Ictalurus_punctatus
ENSRNOG00000000166	Apex2	100	80.695	ENSSTOG00000025121	APEX2	100	80.888	Ictidomys_tridecemlineatus
ENSRNOG00000000166	Apex2	100	80.464	ENSJJAG00000019611	Apex2	100	80.464	Jaculus_jaculus
ENSRNOG00000000166	Apex2	99	49.020	ENSKMAG00000006985	apex2	99	49.020	Kryptolebias_marmoratus
ENSRNOG00000000166	Apex2	99	46.620	ENSLBEG00000012139	apex2	99	46.620	Labrus_bergylta
ENSRNOG00000000166	Apex2	99	43.262	ENSLACG00000000865	APEX2	99	43.262	Latimeria_chalumnae
ENSRNOG00000000166	Apex2	99	45.439	ENSLOCG00000014467	apex2	99	46.379	Lepisosteus_oculatus
ENSRNOG00000000166	Apex2	100	76.255	ENSLAFG00000018312	APEX2	100	76.255	Loxodonta_africana
ENSRNOG00000000166	Apex2	100	78.958	ENSMFAG00000002486	APEX2	100	78.958	Macaca_fascicularis
ENSRNOG00000000166	Apex2	100	78.571	ENSMMUG00000008428	APEX2	100	78.571	Macaca_mulatta
ENSRNOG00000000166	Apex2	100	78.958	ENSMNEG00000036783	APEX2	100	78.958	Macaca_nemestrina
ENSRNOG00000000166	Apex2	100	78.764	ENSMLEG00000028208	APEX2	100	78.764	Mandrillus_leucophaeus
ENSRNOG00000000166	Apex2	99	44.388	ENSMAMG00000024220	apex2	99	44.388	Mastacembelus_armatus
ENSRNOG00000000166	Apex2	99	46.350	ENSMZEG00005026322	apex2	99	47.320	Maylandia_zebra
ENSRNOG00000000166	Apex2	100	74.710	ENSMICG00000043181	APEX2	100	74.710	Microcebus_murinus
ENSRNOG00000000166	Apex2	100	87.234	ENSMOCG00000004339	Apex2	100	88.201	Microtus_ochrogaster
ENSRNOG00000000166	Apex2	99	45.611	ENSMMOG00000017340	apex2	99	44.983	Mola_mola
ENSRNOG00000000166	Apex2	99	57.255	ENSMODG00000005341	APEX2	99	57.255	Monodelphis_domestica
ENSRNOG00000000166	Apex2	99	43.824	ENSMALG00000014179	apex2	99	44.162	Monopterus_albus
ENSRNOG00000000166	Apex2	100	93.411	MGP_CAROLIEiJ_G0033484	Apex2	100	93.411	Mus_caroli
ENSRNOG00000000166	Apex2	100	92.636	ENSMUSG00000025269	Apex2	100	92.636	Mus_musculus
ENSRNOG00000000166	Apex2	100	94.380	MGP_PahariEiJ_G0032023	Apex2	100	94.380	Mus_pahari
ENSRNOG00000000166	Apex2	100	93.217	MGP_SPRETEiJ_G0034654	Apex2	100	93.217	Mus_spretus
ENSRNOG00000000166	Apex2	100	76.983	ENSMPUG00000003293	APEX2	100	76.983	Mustela_putorius_furo
ENSRNOG00000000166	Apex2	100	72.447	ENSMLUG00000004562	-	100	72.447	Myotis_lucifugus
ENSRNOG00000000166	Apex2	100	73.988	ENSMLUG00000016298	-	100	73.988	Myotis_lucifugus
ENSRNOG00000000166	Apex2	100	81.238	ENSNGAG00000013576	Apex2	100	81.238	Nannospalax_galili
ENSRNOG00000000166	Apex2	99	46.060	ENSNBRG00000010099	apex2	99	46.060	Neolamprologus_brichardi
ENSRNOG00000000166	Apex2	79	81.579	ENSNLEG00000032067	-	99	81.579	Nomascus_leucogenys
ENSRNOG00000000166	Apex2	99	49.526	ENSONIG00000016881	apex2	99	49.526	Oreochromis_niloticus
ENSRNOG00000000166	Apex2	89	53.445	ENSOANG00000000689	-	95	53.445	Ornithorhynchus_anatinus
ENSRNOG00000000166	Apex2	100	63.931	ENSOCUG00000000570	APEX2	100	63.931	Oryctolagus_cuniculus
ENSRNOG00000000166	Apex2	99	46.964	ENSORLG00000014053	apex2	99	46.964	Oryzias_latipes
ENSRNOG00000000166	Apex2	99	46.429	ENSORLG00020013253	apex2	99	46.429	Oryzias_latipes_hni
ENSRNOG00000000166	Apex2	99	46.964	ENSORLG00015007515	apex2	99	46.964	Oryzias_latipes_hsok
ENSRNOG00000000166	Apex2	99	46.250	ENSOMEG00000003655	apex2	99	46.250	Oryzias_melastigma
ENSRNOG00000000166	Apex2	99	77.237	ENSOGAG00000007797	APEX2	99	77.237	Otolemur_garnettii
ENSRNOG00000000166	Apex2	100	79.110	ENSOARG00000005742	APEX2	100	79.110	Ovis_aries
ENSRNOG00000000166	Apex2	100	78.958	ENSPPAG00000035747	APEX2	100	78.958	Pan_paniscus
ENSRNOG00000000166	Apex2	100	75.097	ENSPPRG00000002440	APEX2	100	75.097	Panthera_pardus
ENSRNOG00000000166	Apex2	100	74.710	ENSPTIG00000021651	APEX2	100	74.710	Panthera_tigris_altaica
ENSRNOG00000000166	Apex2	100	79.151	ENSPTRG00000021946	APEX2	100	79.151	Pan_troglodytes
ENSRNOG00000000166	Apex2	100	78.958	ENSPANG00000003595	APEX2	100	78.958	Papio_anubis
ENSRNOG00000000166	Apex2	99	45.599	ENSPKIG00000007752	apex2	99	45.599	Paramormyrops_kingsleyae
ENSRNOG00000000166	Apex2	99	43.517	ENSPMGG00000009151	apex2	99	43.517	Periophthalmus_magnuspinnatus
ENSRNOG00000000166	Apex2	100	88.008	ENSPEMG00000016475	Apex2	100	88.008	Peromyscus_maniculatus_bairdii
ENSRNOG00000000166	Apex2	99	56.582	ENSPCIG00000007633	APEX2	98	56.778	Phascolarctos_cinereus
ENSRNOG00000000166	Apex2	99	45.439	ENSPFOG00000000408	apex2	99	45.439	Poecilia_formosa
ENSRNOG00000000166	Apex2	99	45.439	ENSPLAG00000023814	apex2	99	45.439	Poecilia_latipinna
ENSRNOG00000000166	Apex2	99	44.737	ENSPMEG00000023222	apex2	99	44.737	Poecilia_mexicana
ENSRNOG00000000166	Apex2	100	79.151	ENSPPYG00000020388	APEX2	100	79.151	Pongo_abelii
ENSRNOG00000000166	Apex2	100	76.834	ENSPCOG00000016083	APEX2	100	76.834	Propithecus_coquereli
ENSRNOG00000000166	Apex2	90	76.774	ENSPVAG00000007851	APEX2	100	76.774	Pteropus_vampyrus
ENSRNOG00000000166	Apex2	99	44.912	ENSPNYG00000015698	apex2	99	44.912	Pundamilia_nyererei
ENSRNOG00000000166	Apex2	99	45.270	ENSPNAG00000011666	apex2	99	45.270	Pygocentrus_nattereri
ENSRNOG00000000166	Apex2	100	79.151	ENSRBIG00000036500	APEX2	100	79.151	Rhinopithecus_bieti
ENSRNOG00000000166	Apex2	100	79.151	ENSRROG00000032674	APEX2	100	79.151	Rhinopithecus_roxellana
ENSRNOG00000000166	Apex2	100	78.378	ENSSBOG00000030500	-	100	78.958	Saimiri_boliviensis_boliviensis
ENSRNOG00000000166	Apex2	96	63.126	ENSSBOG00000003489	-	99	63.126	Saimiri_boliviensis_boliviensis
ENSRNOG00000000166	Apex2	99	56.189	ENSSHAG00000007846	APEX2	99	56.189	Sarcophilus_harrisii
ENSRNOG00000000166	Apex2	99	47.706	ENSSFOG00015010354	apex2	99	47.628	Scleropages_formosus
ENSRNOG00000000166	Apex2	99	45.899	ENSSMAG00000012753	apex2	99	45.899	Scophthalmus_maximus
ENSRNOG00000000166	Apex2	99	44.840	ENSSDUG00000022892	apex2	99	45.196	Seriola_dumerili
ENSRNOG00000000166	Apex2	99	45.833	ENSSLDG00000024347	apex2	99	46.196	Seriola_lalandi_dorsalis
ENSRNOG00000000166	Apex2	100	71.073	ENSSARG00000010297	APEX2	100	71.073	Sorex_araneus
ENSRNOG00000000166	Apex2	99	47.544	ENSSPAG00000016279	apex2	99	47.636	Stegastes_partitus
ENSRNOG00000000166	Apex2	100	78.227	ENSSSCG00000012348	-	100	78.227	Sus_scrofa
ENSRNOG00000000166	Apex2	99	46.561	ENSTRUG00000015660	apex2	99	46.561	Takifugu_rubripes
ENSRNOG00000000166	Apex2	81	46.698	ENSTNIG00000003725	apex2	100	46.698	Tetraodon_nigroviridis
ENSRNOG00000000166	Apex2	90	76.559	ENSTBEG00000010520	APEX2	100	76.559	Tupaia_belangeri
ENSRNOG00000000166	Apex2	100	77.563	ENSUAMG00000004720	APEX2	100	77.563	Ursus_americanus
ENSRNOG00000000166	Apex2	100	72.921	ENSUMAG00000002892	APEX2	100	72.921	Ursus_maritimus
ENSRNOG00000000166	Apex2	100	78.185	ENSVVUG00000005989	APEX2	100	78.185	Vulpes_vulpes
ENSRNOG00000000166	Apex2	99	49.245	ENSXETG00000022026	apex2	98	49.245	Xenopus_tropicalis
ENSRNOG00000000166	Apex2	99	45.599	ENSXMAG00000025740	apex2	99	45.775	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	21873635.	IBA	Function
GO:0004519	endonuclease activity	-	IEA	Function
GO:0004528	phosphodiesterase I activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005743	mitochondrial inner membrane	-	ISO	Component
GO:0006284	base-excision repair	21873635.	IBA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008311	double-stranded DNA 3'-5' exodeoxyribonuclease activity	21873635.	IBA	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0090305	nucleic acid phosphodiester bond hydrolysis	-	IEA	Process
GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity	-	IEA	Function