EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000396 (Gene tree)
Gene ID: 361848
Gene Symbol: Ddx50
Alias: LOC361848|MGC109605
Full Name: DExD-box helicase 50
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 29398 bases
Position: chr20:32239748-32269145
Accession: 1310934
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000070398	GUCT	PF08152.12	6e-29	1	1
ENSRNOP00000000446	GUCT	PF08152.12	1.4e-28	1	1
ENSRNOP00000000446	ResIII	PF04851.15	2.8e-10	1	1
ENSRNOP00000000446	DEAD	PF00270.29	1.2e-47	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000082114	-	1407	-	ENSRNOP00000070398	380 (aa)	-	Q5BJM0
ENSRNOT00000000446	-	2521	-	ENSRNOP00000000446	734 (aa)	-	D3ZG48

Gene Model

Click here to download ENSRNOG00000000396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000396's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000000396	Ddx50	50	32.267	ENSRNOG00000030628	Eif4a1	88	31.183
ENSRNOG00000000396	Ddx50	50	31.989	ENSRNOG00000001815	Eif4a2	90	31.195
ENSRNOG00000000396	Ddx50	50	33.962	ENSRNOG00000051170	Ddx17	55	33.962
ENSRNOG00000000396	Ddx50	98	58.575	ENSRNOG00000043099	Ddx21	77	63.987
ENSRNOG00000000396	Ddx50	54	32.266	ENSRNOG00000045791	Eif4a3	86	32.888
ENSRNOG00000000396	Ddx50	54	31.204	ENSRNOG00000007838	Ddx47	78	32.086
ENSRNOG00000000396	Ddx50	50	34.783	ENSRNOG00000025430	Ddx18	55	34.783
ENSRNOG00000000396	Ddx50	98	58.311	ENSRNOG00000048990	AABR07037356.1	77	63.666
ENSRNOG00000000396	Ddx50	55	33.886	ENSRNOG00000008081	Ddx27	52	33.732

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000396	Ddx50	98	98.396	ENSG00000107625	DDX50	92	94.248	Homo_sapiens
ENSRNOG00000000396	Ddx50	98	97.861	ENSAMEG00000017992	DDX50	92	93.225	Ailuropoda_melanoleuca
ENSRNOG00000000396	Ddx50	94	69.274	ENSANAG00000030991	-	87	76.254	Aotus_nancymaae
ENSRNOG00000000396	Ddx50	92	75.109	ENSANAG00000017785	-	91	74.311	Aotus_nancymaae
ENSRNOG00000000396	Ddx50	98	97.861	ENSBTAG00000033413	DDX50	92	94.248	Bos_taurus
ENSRNOG00000000396	Ddx50	100	97.632	ENSCJAG00000018844	DDX50	100	97.632	Callithrix_jacchus
ENSRNOG00000000396	Ddx50	98	98.128	ENSCAFG00000013776	DDX50	99	93.667	Canis_familiaris
ENSRNOG00000000396	Ddx50	98	98.128	ENSCAFG00020025977	DDX50	92	93.667	Canis_lupus_dingo
ENSRNOG00000000396	Ddx50	98	98.128	ENSCHIG00000000285	DDX50	92	93.953	Capra_hircus
ENSRNOG00000000396	Ddx50	98	97.326	ENSTSYG00000004192	DDX50	99	97.326	Carlito_syrichta
ENSRNOG00000000396	Ddx50	91	75.186	ENSCAPG00000007230	-	87	77.350	Cavia_aperea
ENSRNOG00000000396	Ddx50	98	97.059	ENSCPOG00000002131	-	92	94.978	Cavia_porcellus
ENSRNOG00000000396	Ddx50	82	93.548	ENSCCAG00000030543	DDX50	90	93.548	Cebus_capucinus
ENSRNOG00000000396	Ddx50	100	69.554	ENSCATG00000039259	-	83	72.050	Cercocebus_atys
ENSRNOG00000000396	Ddx50	94	84.551	ENSCATG00000035153	-	91	86.810	Cercocebus_atys
ENSRNOG00000000396	Ddx50	98	98.396	ENSCATG00000032463	DDX50	93	96.375	Cercocebus_atys
ENSRNOG00000000396	Ddx50	98	98.396	ENSCLAG00000012957	-	100	95.652	Chinchilla_lanigera
ENSRNOG00000000396	Ddx50	98	77.273	ENSCLAG00000001938	-	91	68.971	Chinchilla_lanigera
ENSRNOG00000000396	Ddx50	100	85.263	ENSCLAG00000001553	-	82	86.293	Chinchilla_lanigera
ENSRNOG00000000396	Ddx50	98	98.396	ENSCSAG00000007703	DDX50	92	94.395	Chlorocebus_sabaeus
ENSRNOG00000000396	Ddx50	87	97.590	ENSCHOG00000000233	DDX50	97	91.525	Choloepus_hoffmanni
ENSRNOG00000000396	Ddx50	98	94.920	ENSCANG00000036450	-	100	81.682	Colobus_angolensis_palliatus
ENSRNOG00000000396	Ddx50	98	78.075	ENSCANG00000018820	-	88	70.609	Colobus_angolensis_palliatus
ENSRNOG00000000396	Ddx50	91	78.386	ENSCANG00000028077	-	91	65.396	Colobus_angolensis_palliatus
ENSRNOG00000000396	Ddx50	98	99.465	ENSCGRG00001020223	Ddx50	100	97.011	Cricetulus_griseus_chok1gshd
ENSRNOG00000000396	Ddx50	98	98.930	ENSCGRG00000015884	Ddx50	100	96.739	Cricetulus_griseus_crigri
ENSRNOG00000000396	Ddx50	87	87.790	ENSDNOG00000001675	DDX50	100	87.790	Dasypus_novemcinctus
ENSRNOG00000000396	Ddx50	98	97.594	ENSDORG00000007310	Ddx50	92	94.248	Dipodomys_ordii
ENSRNOG00000000396	Ddx50	98	96.524	ENSETEG00000014069	DDX50	90	96.903	Echinops_telfairi
ENSRNOG00000000396	Ddx50	98	97.594	ENSEASG00005015595	DDX50	92	93.510	Equus_asinus_asinus
ENSRNOG00000000396	Ddx50	98	97.594	ENSECAG00000023044	DDX50	92	93.510	Equus_caballus
ENSRNOG00000000396	Ddx50	98	93.048	ENSEEUG00000005782	DDX50	79	97.117	Erinaceus_europaeus
ENSRNOG00000000396	Ddx50	98	98.396	ENSFCAG00000012678	DDX50	92	93.962	Felis_catus
ENSRNOG00000000396	Ddx50	92	87.906	ENSFDAG00000016109	-	91	87.168	Fukomys_damarensis
ENSRNOG00000000396	Ddx50	98	70.053	ENSGGOG00000022568	-	91	78.462	Gorilla_gorilla
ENSRNOG00000000396	Ddx50	100	80.779	ENSGGOG00000041063	-	84	82.515	Gorilla_gorilla
ENSRNOG00000000396	Ddx50	99	98.138	ENSGGOG00000010100	DDX50	100	98.138	Gorilla_gorilla
ENSRNOG00000000396	Ddx50	98	97.326	ENSHGLG00000013466	DDX50	92	92.920	Heterocephalus_glaber_female
ENSRNOG00000000396	Ddx50	82	87.234	ENSHGLG00100006568	-	92	87.234	Heterocephalus_glaber_male
ENSRNOG00000000396	Ddx50	98	97.326	ENSHGLG00100017191	DDX50	92	92.920	Heterocephalus_glaber_male
ENSRNOG00000000396	Ddx50	100	93.496	ENSSTOG00000021852	-	92	92.489	Ictidomys_tridecemlineatus
ENSRNOG00000000396	Ddx50	98	97.059	ENSJJAG00000023928	-	92	93.205	Jaculus_jaculus
ENSRNOG00000000396	Ddx50	98	78.836	ENSJJAG00000019626	-	91	73.042	Jaculus_jaculus
ENSRNOG00000000396	Ddx50	98	97.594	ENSLAFG00000006186	DDX50	92	94.395	Loxodonta_africana
ENSRNOG00000000396	Ddx50	94	83.989	ENSMFAG00000045339	-	91	86.196	Macaca_fascicularis
ENSRNOG00000000396	Ddx50	98	98.396	ENSMFAG00000044067	DDX50	92	94.395	Macaca_fascicularis
ENSRNOG00000000396	Ddx50	98	98.396	ENSMMUG00000001006	DDX50	94	96.413	Macaca_mulatta
ENSRNOG00000000396	Ddx50	98	71.237	ENSMMUG00000045343	-	80	65.763	Macaca_mulatta
ENSRNOG00000000396	Ddx50	94	84.551	ENSMNEG00000045530	-	91	87.117	Macaca_nemestrina
ENSRNOG00000000396	Ddx50	91	73.410	ENSMNEG00000034754	-	89	72.923	Macaca_nemestrina
ENSRNOG00000000396	Ddx50	92	88.053	ENSMNEG00000031664	DDX50	92	87.463	Macaca_nemestrina
ENSRNOG00000000396	Ddx50	94	82.865	ENSMLEG00000041988	-	89	86.822	Mandrillus_leucophaeus
ENSRNOG00000000396	Ddx50	83	73.270	ENSMLEG00000041337	-	83	73.926	Mandrillus_leucophaeus
ENSRNOG00000000396	Ddx50	98	94.920	ENSMLEG00000037313	DDX50	92	92.478	Mandrillus_leucophaeus
ENSRNOG00000000396	Ddx50	56	95.388	ENSMAUG00000022192	Ddx50	100	94.660	Mesocricetus_auratus
ENSRNOG00000000396	Ddx50	91	93.895	ENSMAUG00000011906	-	100	93.895	Mesocricetus_auratus
ENSRNOG00000000396	Ddx50	91	93.895	ENSMAUG00000000119	-	100	93.895	Mesocricetus_auratus
ENSRNOG00000000396	Ddx50	98	97.059	ENSMICG00000017539	DDX50	100	88.043	Microcebus_murinus
ENSRNOG00000000396	Ddx50	98	98.930	ENSMOCG00000001676	Ddx50	100	96.341	Microtus_ochrogaster
ENSRNOG00000000396	Ddx50	92	79.356	ENSMODG00000010741	DDX50	92	79.386	Monodelphis_domestica
ENSRNOG00000000396	Ddx50	100	98.501	MGP_CAROLIEiJ_G0015389	Ddx50	100	98.501	Mus_caroli
ENSRNOG00000000396	Ddx50	100	99.046	ENSMUSG00000020076	Ddx50	100	99.046	Mus_musculus
ENSRNOG00000000396	Ddx50	100	99.183	MGP_PahariEiJ_G0030805	Ddx50	100	99.183	Mus_pahari
ENSRNOG00000000396	Ddx50	100	99.046	MGP_SPRETEiJ_G0016200	Ddx50	100	99.046	Mus_spretus
ENSRNOG00000000396	Ddx50	88	94.127	ENSMPUG00000004589	DDX50	99	94.127	Mustela_putorius_furo
ENSRNOG00000000396	Ddx50	92	92.183	ENSMLUG00000017590	DDX50	92	91.593	Myotis_lucifugus
ENSRNOG00000000396	Ddx50	100	97.011	ENSNGAG00000004283	Ddx50	100	97.011	Nannospalax_galili
ENSRNOG00000000396	Ddx50	95	73.699	ENSNLEG00000035506	-	88	77.882	Nomascus_leucogenys
ENSRNOG00000000396	Ddx50	98	98.396	ENSNLEG00000011631	DDX50	92	94.248	Nomascus_leucogenys
ENSRNOG00000000396	Ddx50	92	92.614	ENSOPRG00000001619	DDX50	92	92.762	Ochotona_princeps
ENSRNOG00000000396	Ddx50	98	97.594	ENSODEG00000014597	-	92	94.092	Octodon_degus
ENSRNOG00000000396	Ddx50	98	65.873	ENSOANG00000004776	DDX50	80	68.976	Ornithorhynchus_anatinus
ENSRNOG00000000396	Ddx50	98	91.711	ENSOCUG00000002879	DDX50	95	93.796	Oryctolagus_cuniculus
ENSRNOG00000000396	Ddx50	98	98.128	ENSOGAG00000001844	DDX50	92	93.805	Otolemur_garnettii
ENSRNOG00000000396	Ddx50	98	97.861	ENSOARG00000005264	DDX50	92	93.953	Ovis_aries
ENSRNOG00000000396	Ddx50	100	69.452	ENSPPAG00000026788	-	90	78.505	Pan_paniscus
ENSRNOG00000000396	Ddx50	98	98.396	ENSPPAG00000040723	DDX50	92	94.100	Pan_paniscus
ENSRNOG00000000396	Ddx50	95	80.926	ENSPPAG00000033902	-	89	81.595	Pan_paniscus
ENSRNOG00000000396	Ddx50	98	98.396	ENSPPRG00000015826	DDX50	92	93.962	Panthera_pardus
ENSRNOG00000000396	Ddx50	98	98.396	ENSPTIG00000008454	DDX50	92	93.962	Panthera_tigris_altaica
ENSRNOG00000000396	Ddx50	100	69.452	ENSPTRG00000044913	-	99	71.579	Pan_troglodytes
ENSRNOG00000000396	Ddx50	98	98.396	ENSPTRG00000002562	DDX50	92	94.100	Pan_troglodytes
ENSRNOG00000000396	Ddx50	92	73.639	ENSPANG00000032548	-	89	73.538	Papio_anubis
ENSRNOG00000000396	Ddx50	98	98.396	ENSPANG00000022143	-	92	86.578	Papio_anubis
ENSRNOG00000000396	Ddx50	98	97.059	ENSPEMG00000020899	-	92	94.830	Peromyscus_maniculatus_bairdii
ENSRNOG00000000396	Ddx50	92	78.614	ENSPCIG00000016036	DDX50	94	78.561	Phascolarctos_cinereus
ENSRNOG00000000396	Ddx50	98	98.396	ENSPPYG00000002390	DDX50	91	95.261	Pongo_abelii
ENSRNOG00000000396	Ddx50	84	79.675	ENSPCAG00000009692	DDX50	100	79.675	Procavia_capensis
ENSRNOG00000000396	Ddx50	97	78.747	ENSPCOG00000012574	DDX50	88	84.333	Propithecus_coquereli
ENSRNOG00000000396	Ddx50	86	88.705	ENSPVAG00000009519	DDX50	78	88.981	Pteropus_vampyrus
ENSRNOG00000000396	Ddx50	87	93.157	ENSRBIG00000042841	-	98	95.156	Rhinopithecus_bieti
ENSRNOG00000000396	Ddx50	100	73.560	ENSRBIG00000036573	-	84	73.375	Rhinopithecus_bieti
ENSRNOG00000000396	Ddx50	98	73.995	ENSRBIG00000039673	-	90	63.235	Rhinopithecus_bieti
ENSRNOG00000000396	Ddx50	98	73.529	ENSRROG00000022853	-	83	70.833	Rhinopithecus_roxellana
ENSRNOG00000000396	Ddx50	98	68.901	ENSRROG00000031940	-	87	74.154	Rhinopithecus_roxellana
ENSRNOG00000000396	Ddx50	98	98.128	ENSRROG00000032158	DDX50	91	95.574	Rhinopithecus_roxellana
ENSRNOG00000000396	Ddx50	98	77.807	ENSSBOG00000014441	DDX50	99	84.127	Saimiri_boliviensis_boliviensis
ENSRNOG00000000396	Ddx50	81	66.450	ENSSHAG00000005334	-	80	67.261	Sarcophilus_harrisii
ENSRNOG00000000396	Ddx50	82	87.500	ENSSHAG00000005690	DDX50	91	79.787	Sarcophilus_harrisii
ENSRNOG00000000396	Ddx50	100	77.717	ENSSARG00000013553	DDX50	88	84.161	Sorex_araneus
ENSRNOG00000000396	Ddx50	98	96.524	ENSSSCG00000010246	DDX50	92	92.920	Sus_scrofa
ENSRNOG00000000396	Ddx50	96	73.521	ENSTBEG00000001085	DDX50	92	72.378	Tupaia_belangeri
ENSRNOG00000000396	Ddx50	98	95.989	ENSTTRG00000012408	DDX50	99	87.924	Tursiops_truncatus
ENSRNOG00000000396	Ddx50	98	97.861	ENSUAMG00000010976	DDX50	99	97.782	Ursus_americanus
ENSRNOG00000000396	Ddx50	98	97.861	ENSUMAG00000007726	DDX50	92	93.520	Ursus_maritimus
ENSRNOG00000000396	Ddx50	98	98.128	ENSVPAG00000000626	DDX50	92	93.068	Vicugna_pacos
ENSRNOG00000000396	Ddx50	100	97.632	ENSVVUG00000020366	DDX50	100	97.632	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component