EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000420 (Gene tree)
Gene ID: 294258
Gene Symbol: Nelfe
Alias: Rd|Rdbp
Full Name: negative elongation factor complex member E
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 5868 bases
Position: chr20:4530342-4536209
Accession: 1303325
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000000478	RRM_1	PF00076.22	2.2e-11	1	1
ENSRNOP00000068403	RRM_1	PF00076.22	2.2e-11	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000075925	-	791	-	ENSRNOP00000068302	179 (aa)	-	A0A096MJX9
ENSRNOT00000000478	-	1520	XM_006255922	ENSRNOP00000000478	369 (aa)	XP_006255984	Q6MG75
ENSRNOT00000076352	-	1271	XM_006255921	ENSRNOP00000068403	369 (aa)	XP_006255983	Q6MG75

Gene Model

Click here to download ENSRNOG00000000420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000420's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000420	Nelfe	100	92.453	ENSG00000204356	NELFE	100	94.969	Homo_sapiens
ENSRNOG00000000420	Nelfe	100	91.914	ENSANAG00000038256	NELFE	98	92.722	Aotus_nancymaae
ENSRNOG00000000420	Nelfe	100	93.225	ENSCATG00000028969	NELFE	98	93.225	Cercocebus_atys
ENSRNOG00000000420	Nelfe	100	90.244	ENSCLAG00000009684	NELFE	98	90.244	Chinchilla_lanigera
ENSRNOG00000000420	Nelfe	50	48.529	ENSCSAVG00000004231	-	67	48.529	Ciona_savignyi
ENSRNOG00000000420	Nelfe	93	78.947	ENSDNOG00000006996	-	94	79.217	Dasypus_novemcinctus
ENSRNOG00000000420	Nelfe	100	45.676	ENSEBUG00000017070	nelfe	92	66.216	Eptatretus_burgeri
ENSRNOG00000000420	Nelfe	72	96.296	ENSEEUG00000005004	NELFE	67	96.296	Erinaceus_europaeus
ENSRNOG00000000420	Nelfe	100	49.868	ENSELUG00000005830	nelfe	72	74.227	Esox_lucius
ENSRNOG00000000420	Nelfe	100	92.453	ENSFCAG00000004518	NELFE	98	92.722	Felis_catus
ENSRNOG00000000420	Nelfe	100	63.784	ENSGALG00000045676	NELFE	95	76.744	Gallus_gallus
ENSRNOG00000000420	Nelfe	100	60.434	ENSGACG00000002935	nelfe	52	66.082	Gasterosteus_aculeatus
ENSRNOG00000000420	Nelfe	74	86.029	ENSHGLG00000016601	NELFE	92	84.000	Heterocephalus_glaber_female
ENSRNOG00000000420	Nelfe	100	91.375	ENSLAFG00000028155	NELFE	94	98.450	Loxodonta_africana
ENSRNOG00000000420	Nelfe	100	92.954	ENSMLEG00000030245	NELFE	98	92.954	Mandrillus_leucophaeus
ENSRNOG00000000420	Nelfe	87	57.988	ENSMGAG00000001297	NELFE	75	74.797	Meleagris_gallopavo
ENSRNOG00000000420	Nelfe	100	93.261	ENSMOCG00000003723	Nelfe	100	93.801	Microtus_ochrogaster
ENSRNOG00000000420	Nelfe	82	90.698	ENSMODG00000015063	NELFE	94	90.286	Monodelphis_domestica
ENSRNOG00000000420	Nelfe	100	97.587	MGP_CAROLIEiJ_G0021478	Nelfe	100	97.587	Mus_caroli
ENSRNOG00000000420	Nelfe	100	97.561	ENSMUSG00000024369	Nelfe	100	97.561	Mus_musculus
ENSRNOG00000000420	Nelfe	100	97.290	MGP_PahariEiJ_G0020473	Nelfe	100	97.290	Mus_pahari
ENSRNOG00000000420	Nelfe	100	97.587	MGP_SPRETEiJ_G0022383	Nelfe	100	97.587	Mus_spretus
ENSRNOG00000000420	Nelfe	61	73.469	ENSOMEG00000008581	nelfe	67	72.868	Oryzias_melastigma
ENSRNOG00000000420	Nelfe	100	91.914	ENSPPRG00000004421	NELFE	98	92.183	Panthera_pardus
ENSRNOG00000000420	Nelfe	100	91.914	ENSPTIG00000003753	NELFE	98	92.183	Panthera_tigris_altaica
ENSRNOG00000000420	Nelfe	100	91.153	ENSPTRG00000017996	NELFE	98	83.914	Pan_troglodytes
ENSRNOG00000000420	Nelfe	100	92.954	ENSPANG00000019366	NELFE	98	92.954	Papio_anubis
ENSRNOG00000000420	Nelfe	100	67.751	ENSPKIG00000012048	nelfe	75	77.241	Paramormyrops_kingsleyae
ENSRNOG00000000420	Nelfe	67	88.618	ENSPCAG00000004108	NELFE	65	88.618	Procavia_capensis
ENSRNOG00000000420	Nelfe	100	93.225	ENSPCOG00000024944	NELFE	98	93.225	Propithecus_coquereli
ENSRNOG00000000420	Nelfe	100	90.289	ENSRBIG00000028593	-	98	85.095	Rhinopithecus_bieti
ENSRNOG00000000420	Nelfe	93	89.826	ENSSARG00000003684	NELFE	95	89.521	Sorex_araneus
ENSRNOG00000000420	Nelfe	100	92.683	ENSSSCG00000001423	NELFE	98	92.683	Sus_scrofa
ENSRNOG00000000420	Nelfe	100	64.499	ENSXMAG00000014078	nelfe	99	64.499	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	20097260.	IMP	Process
GO:0003682	chromatin binding	20097260.	IDA	Function
GO:0003682	chromatin binding	21623364.	IMP	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	20097260.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0016604	nuclear body	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0032021	NELF complex	-	IEA	Component
GO:0032021	NELF complex	-	ISO	Component
GO:0034244	negative regulation of transcription elongation from RNA polymerase II promoter	-	IEA	Process
GO:0034244	negative regulation of transcription elongation from RNA polymerase II promoter	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21623364.	IMP	Process
GO:0051571	positive regulation of histone H3-K4 methylation	21623364.	IMP	Process
GO:0070374	positive regulation of ERK1 and ERK2 cascade	19014935.	IMP	Process
GO:1900364	negative regulation of mRNA polyadenylation	-	IEA	Process
GO:1900364	negative regulation of mRNA polyadenylation	-	ISO	Process