EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000421 (Gene tree)
Gene ID: 294260
Gene Symbol: Skiv2l
Alias: -
Full Name: Ski2 like RNA helicase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10653 bases
Position: chr20:4519474-4530126
Accession: 1303059
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000000481	rRNA_proc-arch	PF13234.6	1.9e-42	1	1
ENSRNOP00000000481	DEAD	PF00270.29	9e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000000481	-	3912	XM_006255923	ENSRNOP00000000481	1244 (aa)	XP_006255985	A0A0G2QC02

Gene Model

Click here to download ENSRNOG00000000421's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000421's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000000421	Skiv2l	79	36.100	ENSRNOG00000010125	Mtrex	89	36.100

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000421	Skiv2l	100	93.424	ENSG00000204351	SKIV2L	98	95.506	Homo_sapiens
ENSRNOG00000000421	Skiv2l	99	61.477	ENSAPOG00000008257	skiv2l	99	61.966	Acanthochromis_polyacanthus
ENSRNOG00000000421	Skiv2l	100	93.585	ENSAMEG00000002078	SKIV2L	100	93.585	Ailuropoda_melanoleuca
ENSRNOG00000000421	Skiv2l	99	60.144	ENSACIG00000016719	skiv2l	99	60.452	Amphilophus_citrinellus
ENSRNOG00000000421	Skiv2l	99	61.459	ENSAOCG00000017352	skiv2l	99	61.736	Amphiprion_ocellaris
ENSRNOG00000000421	Skiv2l	99	61.380	ENSAPEG00000001055	skiv2l	99	61.656	Amphiprion_percula
ENSRNOG00000000421	Skiv2l	99	61.005	ENSATEG00000007601	skiv2l	99	61.156	Anabas_testudineus
ENSRNOG00000000421	Skiv2l	99	65.436	ENSACAG00000011746	SKIV2L	98	66.268	Anolis_carolinensis
ENSRNOG00000000421	Skiv2l	100	93.986	ENSANAG00000037992	SKIV2L	100	93.986	Aotus_nancymaae
ENSRNOG00000000421	Skiv2l	99	61.844	ENSACLG00000006886	skiv2l	99	62.288	Astatotilapia_calliptera
ENSRNOG00000000421	Skiv2l	98	59.984	ENSAMXG00000011517	skiv2l	99	60.193	Astyanax_mexicanus
ENSRNOG00000000421	Skiv2l	100	93.745	ENSBTAG00000005587	SKIV2L	100	93.745	Bos_taurus
ENSRNOG00000000421	Skiv2l	95	39.093	WBGene00008502	skih-2	99	39.171	Caenorhabditis_elegans
ENSRNOG00000000421	Skiv2l	100	93.665	ENSCJAG00000002263	SKIV2L	100	93.665	Callithrix_jacchus
ENSRNOG00000000421	Skiv2l	100	93.264	ENSCAFG00000000679	SKIV2L	100	93.264	Canis_familiaris
ENSRNOG00000000421	Skiv2l	100	93.184	ENSCAFG00020000948	SKIV2L	100	93.184	Canis_lupus_dingo
ENSRNOG00000000421	Skiv2l	100	93.745	ENSCHIG00000012897	SKIV2L	100	93.745	Capra_hircus
ENSRNOG00000000421	Skiv2l	100	93.344	ENSTSYG00000012133	SKIV2L	100	93.344	Carlito_syrichta
ENSRNOG00000000421	Skiv2l	100	92.444	ENSCPOG00000001307	SKIV2L	100	92.444	Cavia_porcellus
ENSRNOG00000000421	Skiv2l	100	93.745	ENSCCAG00000026206	SKIV2L	100	93.745	Cebus_capucinus
ENSRNOG00000000421	Skiv2l	100	93.585	ENSCATG00000036901	SKIV2L	100	93.585	Cercocebus_atys
ENSRNOG00000000421	Skiv2l	100	93.023	ENSCLAG00000007678	SKIV2L	100	93.023	Chinchilla_lanigera
ENSRNOG00000000421	Skiv2l	100	93.424	ENSCSAG00000008988	SKIV2L	100	93.424	Chlorocebus_sabaeus
ENSRNOG00000000421	Skiv2l	87	64.327	ENSCPBG00000000343	SKIV2L	96	65.749	Chrysemys_picta_bellii
ENSRNOG00000000421	Skiv2l	94	50.759	ENSCING00000005576	-	99	50.759	Ciona_intestinalis
ENSRNOG00000000421	Skiv2l	99	93.740	ENSCANG00000039709	SKIV2L	100	93.740	Colobus_angolensis_palliatus
ENSRNOG00000000421	Skiv2l	100	95.820	ENSCGRG00001008385	Skiv2l	100	95.820	Cricetulus_griseus_chok1gshd
ENSRNOG00000000421	Skiv2l	99	61.022	ENSCSEG00000011326	skiv2l	98	61.439	Cynoglossus_semilaevis
ENSRNOG00000000421	Skiv2l	99	61.231	ENSCVAG00000003072	skiv2l	99	61.334	Cyprinodon_variegatus
ENSRNOG00000000421	Skiv2l	99	60.553	ENSDARG00000062206	skiv2l	99	60.817	Danio_rerio
ENSRNOG00000000421	Skiv2l	94	93.590	ENSDNOG00000037590	SKIV2L	100	86.309	Dasypus_novemcinctus
ENSRNOG00000000421	Skiv2l	93	44.444	FBgn0039117	tst	97	44.529	Drosophila_melanogaster
ENSRNOG00000000421	Skiv2l	72	93.453	ENSETEG00000009522	SKIV2L	69	93.453	Echinops_telfairi
ENSRNOG00000000421	Skiv2l	89	56.882	ENSEBUG00000013680	-	97	56.837	Eptatretus_burgeri
ENSRNOG00000000421	Skiv2l	93	94.578	ENSEASG00005015534	SKIV2L	99	94.578	Equus_asinus_asinus
ENSRNOG00000000421	Skiv2l	95	93.367	ENSECAG00000021823	SKIV2L	96	93.367	Equus_caballus
ENSRNOG00000000421	Skiv2l	55	98.024	ENSEEUG00000005049	SKIV2L	57	98.024	Erinaceus_europaeus
ENSRNOG00000000421	Skiv2l	99	60.143	ENSELUG00000000181	skiv2l	94	66.322	Esox_lucius
ENSRNOG00000000421	Skiv2l	100	93.905	ENSFCAG00000004519	SKIV2L	100	93.905	Felis_catus
ENSRNOG00000000421	Skiv2l	100	90.056	ENSFDAG00000009438	SKIV2L	100	90.385	Fukomys_damarensis
ENSRNOG00000000421	Skiv2l	99	61.490	ENSFHEG00000008853	skiv2l	99	61.767	Fundulus_heteroclitus
ENSRNOG00000000421	Skiv2l	99	59.058	ENSGMOG00000005926	skiv2l	98	59.157	Gadus_morhua
ENSRNOG00000000421	Skiv2l	77	61.163	ENSGALG00000035499	SKIV2L	99	60.834	Gallus_gallus
ENSRNOG00000000421	Skiv2l	99	61.569	ENSGAFG00000002382	skiv2l	99	61.847	Gambusia_affinis
ENSRNOG00000000421	Skiv2l	99	60.524	ENSGACG00000002927	skiv2l	98	60.968	Gasterosteus_aculeatus
ENSRNOG00000000421	Skiv2l	100	93.504	ENSGGOG00000002270	SKIV2L	100	93.504	Gorilla_gorilla
ENSRNOG00000000421	Skiv2l	99	61.765	ENSHBUG00000000726	skiv2l	99	62.208	Haplochromis_burtoni
ENSRNOG00000000421	Skiv2l	100	91.273	ENSHGLG00000016596	SKIV2L	100	91.593	Heterocephalus_glaber_female
ENSRNOG00000000421	Skiv2l	100	88.711	ENSHGLG00100014161	SKIV2L	100	89.031	Heterocephalus_glaber_male
ENSRNOG00000000421	Skiv2l	98	59.902	ENSHCOG00000007191	skiv2l	100	60.065	Hippocampus_comes
ENSRNOG00000000421	Skiv2l	99	60.348	ENSIPUG00000016263	skiv2l	100	60.626	Ictalurus_punctatus
ENSRNOG00000000421	Skiv2l	100	94.868	ENSSTOG00000014596	SKIV2L	100	94.868	Ictidomys_tridecemlineatus
ENSRNOG00000000421	Skiv2l	71	60.287	ENSLACG00000002986	-	73	61.153	Latimeria_chalumnae
ENSRNOG00000000421	Skiv2l	100	92.783	ENSLAFG00000014231	SKIV2L	100	92.783	Loxodonta_africana
ENSRNOG00000000421	Skiv2l	100	93.825	ENSMFAG00000034235	SKIV2L	100	93.825	Macaca_fascicularis
ENSRNOG00000000421	Skiv2l	100	93.745	ENSMMUG00000000736	SKIV2L	100	93.745	Macaca_mulatta
ENSRNOG00000000421	Skiv2l	100	93.745	ENSMNEG00000044474	SKIV2L	100	93.745	Macaca_nemestrina
ENSRNOG00000000421	Skiv2l	100	93.585	ENSMLEG00000030512	SKIV2L	100	93.585	Mandrillus_leucophaeus
ENSRNOG00000000421	Skiv2l	99	61.367	ENSMAMG00000002927	skiv2l	99	61.644	Mastacembelus_armatus
ENSRNOG00000000421	Skiv2l	99	61.765	ENSMZEG00005026415	skiv2l	99	62.208	Maylandia_zebra
ENSRNOG00000000421	Skiv2l	70	51.055	ENSMGAG00000001320	SKIV2L	97	51.055	Meleagris_gallopavo
ENSRNOG00000000421	Skiv2l	100	95.261	ENSMAUG00000018613	Skiv2l	100	95.502	Mesocricetus_auratus
ENSRNOG00000000421	Skiv2l	100	93.905	ENSMICG00000046331	SKIV2L	100	93.905	Microcebus_murinus
ENSRNOG00000000421	Skiv2l	100	94.453	ENSMOCG00000014240	Skiv2l	100	94.453	Microtus_ochrogaster
ENSRNOG00000000421	Skiv2l	99	61.433	ENSMMOG00000014547	skiv2l	98	61.595	Mola_mola
ENSRNOG00000000421	Skiv2l	100	87.200	ENSMODG00000015052	SKIV2L	100	87.200	Monodelphis_domestica
ENSRNOG00000000421	Skiv2l	99	60.048	ENSMALG00000010535	skiv2l	98	60.114	Monopterus_albus
ENSRNOG00000000421	Skiv2l	100	98.312	MGP_CAROLIEiJ_G0021477	Skiv2l	100	98.312	Mus_caroli
ENSRNOG00000000421	Skiv2l	100	98.392	ENSMUSG00000040356	Skiv2l	100	98.392	Mus_musculus
ENSRNOG00000000421	Skiv2l	100	97.910	MGP_PahariEiJ_G0020472	Skiv2l	100	97.910	Mus_pahari
ENSRNOG00000000421	Skiv2l	100	97.990	MGP_SPRETEiJ_G0022382	Skiv2l	100	97.990	Mus_spretus
ENSRNOG00000000421	Skiv2l	100	93.424	ENSMPUG00000010567	SKIV2L	100	93.424	Mustela_putorius_furo
ENSRNOG00000000421	Skiv2l	100	92.141	ENSMLUG00000000628	SKIV2L	100	92.141	Myotis_lucifugus
ENSRNOG00000000421	Skiv2l	99	61.151	ENSNBRG00000018650	skiv2l	98	61.632	Neolamprologus_brichardi
ENSRNOG00000000421	Skiv2l	98	90.554	ENSNLEG00000006451	SKIV2L	99	90.635	Nomascus_leucogenys
ENSRNOG00000000421	Skiv2l	78	92.920	ENSMEUG00000006072	SKIV2L	78	92.920	Notamacropus_eugenii
ENSRNOG00000000421	Skiv2l	100	93.344	ENSOPRG00000003972	SKIV2L	100	93.344	Ochotona_princeps
ENSRNOG00000000421	Skiv2l	100	91.500	ENSODEG00000017516	SKIV2L	100	91.500	Octodon_degus
ENSRNOG00000000421	Skiv2l	99	62.320	ENSONIG00000013500	skiv2l	99	62.612	Oreochromis_niloticus
ENSRNOG00000000421	Skiv2l	100	94.467	ENSOCUG00000007019	SKIV2L	100	94.467	Oryctolagus_cuniculus
ENSRNOG00000000421	Skiv2l	99	62.063	ENSORLG00000002021	skiv2l	99	62.349	Oryzias_latipes
ENSRNOG00000000421	Skiv2l	99	61.984	ENSORLG00020009462	skiv2l	99	62.269	Oryzias_latipes_hni
ENSRNOG00000000421	Skiv2l	99	61.587	ENSORLG00015016750	skiv2l	99	61.866	Oryzias_latipes_hsok
ENSRNOG00000000421	Skiv2l	99	62.609	ENSOMEG00000008531	skiv2l	99	62.823	Oryzias_melastigma
ENSRNOG00000000421	Skiv2l	100	93.745	ENSOGAG00000009578	SKIV2L	100	93.745	Otolemur_garnettii
ENSRNOG00000000421	Skiv2l	100	88.263	ENSOARG00000002411	-	100	88.263	Ovis_aries
ENSRNOG00000000421	Skiv2l	98	92.551	ENSPPAG00000040211	SKIV2L	99	92.551	Pan_paniscus
ENSRNOG00000000421	Skiv2l	100	93.986	ENSPPRG00000005017	SKIV2L	100	93.986	Panthera_pardus
ENSRNOG00000000421	Skiv2l	100	93.665	ENSPTIG00000021656	SKIV2L	100	93.665	Panthera_tigris_altaica
ENSRNOG00000000421	Skiv2l	100	93.504	ENSPTRG00000017997	SKIV2L	100	93.504	Pan_troglodytes
ENSRNOG00000000421	Skiv2l	98	92.464	ENSPANG00000011501	SKIV2L	99	92.464	Papio_anubis
ENSRNOG00000000421	Skiv2l	99	60.220	ENSPKIG00000011876	skiv2l	99	60.445	Paramormyrops_kingsleyae
ENSRNOG00000000421	Skiv2l	99	60.467	ENSPMGG00000019707	skiv2l	98	60.944	Periophthalmus_magnuspinnatus
ENSRNOG00000000421	Skiv2l	100	95.900	ENSPEMG00000019001	Skiv2l	100	95.900	Peromyscus_maniculatus_bairdii
ENSRNOG00000000421	Skiv2l	100	87.130	ENSPCIG00000018792	SKIV2L	100	87.130	Phascolarctos_cinereus
ENSRNOG00000000421	Skiv2l	99	61.776	ENSPFOG00000002424	skiv2l	99	62.058	Poecilia_formosa
ENSRNOG00000000421	Skiv2l	99	61.905	ENSPLAG00000018304	skiv2l	99	62.188	Poecilia_latipinna
ENSRNOG00000000421	Skiv2l	99	61.697	ENSPMEG00000006997	skiv2l	99	61.977	Poecilia_mexicana
ENSRNOG00000000421	Skiv2l	99	59.887	ENSPREG00000002277	skiv2l	98	59.675	Poecilia_reticulata
ENSRNOG00000000421	Skiv2l	100	93.023	ENSPPYG00000016472	SKIV2L	100	93.023	Pongo_abelii
ENSRNOG00000000421	Skiv2l	77	93.838	ENSPCAG00000004178	SKIV2L	77	93.838	Procavia_capensis
ENSRNOG00000000421	Skiv2l	100	94.787	ENSPCOG00000010308	SKIV2L	100	94.787	Propithecus_coquereli
ENSRNOG00000000421	Skiv2l	100	92.061	ENSPVAG00000005136	SKIV2L	100	92.061	Pteropus_vampyrus
ENSRNOG00000000421	Skiv2l	93	66.667	ENSPNYG00000017853	skiv2l	97	66.667	Pundamilia_nyererei
ENSRNOG00000000421	Skiv2l	98	61.637	ENSPNAG00000011823	skiv2l	99	61.637	Pygocentrus_nattereri
ENSRNOG00000000421	Skiv2l	98	91.019	ENSRBIG00000035485	SKIV2L	99	91.019	Rhinopithecus_bieti
ENSRNOG00000000421	Skiv2l	100	93.504	ENSRROG00000036429	SKIV2L	100	93.504	Rhinopithecus_roxellana
ENSRNOG00000000421	Skiv2l	92	38.694	YLR398C	-	93	38.655	Saccharomyces_cerevisiae
ENSRNOG00000000421	Skiv2l	100	93.986	ENSSBOG00000027920	SKIV2L	100	93.986	Saimiri_boliviensis_boliviensis
ENSRNOG00000000421	Skiv2l	100	87.040	ENSSHAG00000008963	SKIV2L	100	86.000	Sarcophilus_harrisii
ENSRNOG00000000421	Skiv2l	99	61.435	ENSSFOG00015016930	skiv2l	99	61.871	Scleropages_formosus
ENSRNOG00000000421	Skiv2l	99	60.880	ENSSMAG00000020185	skiv2l	99	61.254	Scophthalmus_maximus
ENSRNOG00000000421	Skiv2l	99	61.362	ENSSDUG00000019977	skiv2l	99	61.637	Seriola_dumerili
ENSRNOG00000000421	Skiv2l	99	60.435	ENSSLDG00000024382	skiv2l	98	60.586	Seriola_lalandi_dorsalis
ENSRNOG00000000421	Skiv2l	99	62.412	ENSSPUG00000012945	SKIV2L	98	62.589	Sphenodon_punctatus
ENSRNOG00000000421	Skiv2l	94	61.326	ENSSPAG00000012904	skiv2l	98	61.427	Stegastes_partitus
ENSRNOG00000000421	Skiv2l	100	94.707	ENSSSCG00000001424	SKIV2L	100	94.707	Sus_scrofa
ENSRNOG00000000421	Skiv2l	69	66.421	ENSTRUG00000000966	skiv2l	100	55.131	Takifugu_rubripes
ENSRNOG00000000421	Skiv2l	99	59.968	ENSTNIG00000004382	skiv2l	98	60.226	Tetraodon_nigroviridis
ENSRNOG00000000421	Skiv2l	94	93.260	ENSTBEG00000003462	SKIV2L	94	93.260	Tupaia_belangeri
ENSRNOG00000000421	Skiv2l	100	88.212	ENSTTRG00000005931	SKIV2L	100	88.212	Tursiops_truncatus
ENSRNOG00000000421	Skiv2l	100	94.066	ENSUAMG00000024336	SKIV2L	100	94.066	Ursus_americanus
ENSRNOG00000000421	Skiv2l	93	94.320	ENSUMAG00000012666	SKIV2L	99	94.320	Ursus_maritimus
ENSRNOG00000000421	Skiv2l	98	93.485	ENSVVUG00000022807	SKIV2L	98	93.485	Vulpes_vulpes
ENSRNOG00000000421	Skiv2l	100	58.539	ENSXETG00000010932	skiv2l	100	58.651	Xenopus_tropicalis
ENSRNOG00000000421	Skiv2l	99	61.717	ENSXCOG00000019517	skiv2l	96	61.882	Xiphophorus_couchianus
ENSRNOG00000000421	Skiv2l	99	61.221	ENSXMAG00000014079	skiv2l	99	61.495	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0055087	Ski complex	21873635.	IBA	Component
GO:0055087	Ski complex	-	ISO	Component
GO:0070478	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	21873635.	IBA	Process