EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000493 (Gene tree)
Gene ID: 361808
Gene Symbol: Snrpc
Alias: LOC361808|Snrp1c|U1-C|U1C
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 18181 bases
Position: chr20:7409401-7427581
Accession: 1306065
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000000586	zf-U1	PF06220.12	1.1e-22	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000000586	-	1072	XM_006256220	ENSRNOP00000000586	159 (aa)	XP_006256282	D3ZCL3

Gene Model

Click here to download ENSRNOG00000000493's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000493's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000493	Snrpc	100	99.371	ENSG00000124562	SNRPC	100	99.371	Homo_sapiens
ENSRNOG00000000493	Snrpc	100	97.484	ENSAMEG00000000963	SNRPC	88	97.484	Ailuropoda_melanoleuca
ENSRNOG00000000493	Snrpc	99	96.178	ENSACAG00000015721	SNRPC	87	96.178	Anolis_carolinensis
ENSRNOG00000000493	Snrpc	100	94.969	ENSANAG00000019157	-	100	94.969	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	100	75.472	ENSANAG00000021444	-	61	82.292	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	99	91.139	ENSANAG00000020588	-	92	91.139	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	100	98.742	ENSANAG00000007843	-	100	98.742	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	100	99.371	ENSANAG00000019696	-	100	99.371	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	100	88.679	ENSANAG00000019726	-	92	89.308	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	100	86.792	ENSANAG00000021026	-	100	79.874	Aotus_nancymaae
ENSRNOG00000000493	Snrpc	100	84.277	ENSAMXG00000032641	snrpc	87	84.277	Astyanax_mexicanus
ENSRNOG00000000493	Snrpc	100	99.371	ENSBTAG00000024549	SNRPC	100	99.371	Bos_taurus
ENSRNOG00000000493	Snrpc	100	98.113	ENSCJAG00000043055	-	100	98.113	Callithrix_jacchus
ENSRNOG00000000493	Snrpc	100	96.855	ENSCJAG00000041822	-	100	96.855	Callithrix_jacchus
ENSRNOG00000000493	Snrpc	100	99.371	ENSCJAG00000015321	-	100	99.371	Callithrix_jacchus
ENSRNOG00000000493	Snrpc	74	99.153	ENSCAFG00000001231	-	93	99.153	Canis_familiaris
ENSRNOG00000000493	Snrpc	100	96.875	ENSCAFG00000028988	-	100	96.875	Canis_familiaris
ENSRNOG00000000493	Snrpc	100	94.969	ENSCAFG00000031775	-	100	94.969	Canis_familiaris
ENSRNOG00000000493	Snrpc	100	77.987	ENSCAFG00000025525	-	100	77.987	Canis_familiaris
ENSRNOG00000000493	Snrpc	99	87.898	ENSCAFG00020009944	-	90	87.898	Canis_lupus_dingo
ENSRNOG00000000493	Snrpc	100	95.597	ENSCAFG00020005758	-	99	96.178	Canis_lupus_dingo
ENSRNOG00000000493	Snrpc	100	99.371	ENSCAFG00020005945	-	100	99.371	Canis_lupus_dingo
ENSRNOG00000000493	Snrpc	100	94.969	ENSCAFG00020017383	-	100	94.969	Canis_lupus_dingo
ENSRNOG00000000493	Snrpc	100	78.090	ENSCAFG00020026577	-	100	84.270	Canis_lupus_dingo
ENSRNOG00000000493	Snrpc	100	98.742	ENSCHIG00000012087	-	100	98.742	Capra_hircus
ENSRNOG00000000493	Snrpc	99	88.608	ENSTSYG00000029745	-	62	93.496	Carlito_syrichta
ENSRNOG00000000493	Snrpc	100	99.371	ENSTSYG00000011216	-	100	99.371	Carlito_syrichta
ENSRNOG00000000493	Snrpc	100	82.390	ENSTSYG00000025721	-	100	76.101	Carlito_syrichta
ENSRNOG00000000493	Snrpc	89	99.296	ENSCAPG00000005161	SNRPC	100	99.296	Cavia_aperea
ENSRNOG00000000493	Snrpc	100	99.371	ENSCPOG00000008563	SNRPC	100	99.371	Cavia_porcellus
ENSRNOG00000000493	Snrpc	98	79.487	ENSCCAG00000022209	-	95	79.487	Cebus_capucinus
ENSRNOG00000000493	Snrpc	100	93.711	ENSCCAG00000036059	-	89	93.711	Cebus_capucinus
ENSRNOG00000000493	Snrpc	99	80.892	ENSCCAG00000026624	-	66	75.796	Cebus_capucinus
ENSRNOG00000000493	Snrpc	98	91.026	ENSCCAG00000022751	-	95	91.026	Cebus_capucinus
ENSRNOG00000000493	Snrpc	100	99.371	ENSCATG00000035787	SNRPC	100	99.371	Cercocebus_atys
ENSRNOG00000000493	Snrpc	99	80.892	ENSCLAG00000010242	-	96	80.892	Chinchilla_lanigera
ENSRNOG00000000493	Snrpc	100	99.371	ENSCLAG00000016920	SNRPC	100	99.371	Chinchilla_lanigera
ENSRNOG00000000493	Snrpc	100	78.652	ENSCSAG00000009821	SNRPC	100	84.831	Chlorocebus_sabaeus
ENSRNOG00000000493	Snrpc	100	81.132	ENSCHOG00000011439	SNRPC	88	82.166	Choloepus_hoffmanni
ENSRNOG00000000493	Snrpc	100	96.855	ENSCPBG00000027142	SNRPC	100	96.855	Chrysemys_picta_bellii
ENSRNOG00000000493	Snrpc	75	57.724	ENSCING00000021229	ci-zf(matrin)-4	51	85.484	Ciona_intestinalis
ENSRNOG00000000493	Snrpc	100	99.371	ENSCANG00000028035	SNRPC	100	99.371	Colobus_angolensis_palliatus
ENSRNOG00000000493	Snrpc	100	88.050	ENSCGRG00001021483	-	100	81.761	Cricetulus_griseus_chok1gshd
ENSRNOG00000000493	Snrpc	100	100.000	ENSCGRG00001009011	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000000493	Snrpc	99	99.363	ENSCGRG00000005005	Snrpc	99	99.363	Cricetulus_griseus_crigri
ENSRNOG00000000493	Snrpc	100	98.113	ENSDNOG00000034699	-	99	98.113	Dasypus_novemcinctus
ENSRNOG00000000493	Snrpc	75	98.319	ENSDNOG00000042403	-	94	98.319	Dasypus_novemcinctus
ENSRNOG00000000493	Snrpc	100	80.503	ENSDORG00000005955	Snrpc	66	79.618	Dipodomys_ordii
ENSRNOG00000000493	Snrpc	52	93.976	ENSETEG00000008756	-	61	93.548	Echinops_telfairi
ENSRNOG00000000493	Snrpc	98	91.667	ENSETEG00000011265	-	100	91.667	Echinops_telfairi
ENSRNOG00000000493	Snrpc	98	95.513	ENSETEG00000008268	-	100	95.513	Echinops_telfairi
ENSRNOG00000000493	Snrpc	100	99.371	ENSEASG00005021007	SNRPC	100	99.371	Equus_asinus_asinus
ENSRNOG00000000493	Snrpc	100	99.371	ENSECAG00000026848	SNRPC	100	99.371	Equus_caballus
ENSRNOG00000000493	Snrpc	99	79.747	ENSEEUG00000014633	SNRPC	90	79.747	Erinaceus_europaeus
ENSRNOG00000000493	Snrpc	100	92.453	ENSFCAG00000031775	-	88	92.453	Felis_catus
ENSRNOG00000000493	Snrpc	100	99.371	ENSFCAG00000044077	-	100	99.371	Felis_catus
ENSRNOG00000000493	Snrpc	100	98.113	ENSFALG00000003756	SNRPC	100	98.113	Ficedula_albicollis
ENSRNOG00000000493	Snrpc	100	99.371	ENSFDAG00000018111	SNRPC	100	99.371	Fukomys_damarensis
ENSRNOG00000000493	Snrpc	100	96.250	ENSGALG00000002773	SNRPC	100	96.250	Gallus_gallus
ENSRNOG00000000493	Snrpc	100	96.855	ENSGAGG00000003063	SNRPC	100	96.855	Gopherus_agassizii
ENSRNOG00000000493	Snrpc	100	99.371	ENSGGOG00000012499	SNRPC	100	99.371	Gorilla_gorilla
ENSRNOG00000000493	Snrpc	100	80.503	ENSHGLG00000017741	-	100	77.987	Heterocephalus_glaber_female
ENSRNOG00000000493	Snrpc	81	74.419	ENSHGLG00000005871	-	100	74.843	Heterocephalus_glaber_female
ENSRNOG00000000493	Snrpc	100	99.371	ENSHGLG00000013981	SNRPC	100	99.371	Heterocephalus_glaber_female
ENSRNOG00000000493	Snrpc	100	94.969	ENSHGLG00100017764	-	100	94.969	Heterocephalus_glaber_male
ENSRNOG00000000493	Snrpc	100	80.503	ENSHGLG00100010786	-	100	77.987	Heterocephalus_glaber_male
ENSRNOG00000000493	Snrpc	100	99.371	ENSHGLG00100009478	SNRPC	100	99.371	Heterocephalus_glaber_male
ENSRNOG00000000493	Snrpc	100	84.906	ENSIPUG00000024851	snrpc	100	84.906	Ictalurus_punctatus
ENSRNOG00000000493	Snrpc	100	99.371	ENSSTOG00000013786	SNRPC	100	99.371	Ictidomys_tridecemlineatus
ENSRNOG00000000493	Snrpc	100	100.000	ENSJJAG00000021741	Snrpc	100	100.000	Jaculus_jaculus
ENSRNOG00000000493	Snrpc	100	88.125	ENSLACG00000013753	SNRPC	88	91.139	Latimeria_chalumnae
ENSRNOG00000000493	Snrpc	100	99.371	ENSLAFG00000013534	SNRPC	100	99.371	Loxodonta_africana
ENSRNOG00000000493	Snrpc	100	99.371	ENSMFAG00000031764	-	100	99.371	Macaca_fascicularis
ENSRNOG00000000493	Snrpc	100	98.742	ENSMFAG00000030525	-	100	98.742	Macaca_fascicularis
ENSRNOG00000000493	Snrpc	100	98.113	ENSMMUG00000039415	-	100	98.113	Macaca_mulatta
ENSRNOG00000000493	Snrpc	100	98.113	ENSMMUG00000000869	-	97	98.113	Macaca_mulatta
ENSRNOG00000000493	Snrpc	100	90.566	ENSMMUG00000045425	-	100	90.566	Macaca_mulatta
ENSRNOG00000000493	Snrpc	100	99.371	ENSMNEG00000032731	SNRPC	100	99.371	Macaca_nemestrina
ENSRNOG00000000493	Snrpc	100	99.371	ENSMLEG00000033916	-	100	99.371	Mandrillus_leucophaeus
ENSRNOG00000000493	Snrpc	97	91.613	ENSMLEG00000040224	-	89	91.613	Mandrillus_leucophaeus
ENSRNOG00000000493	Snrpc	100	96.226	ENSMGAG00000006054	SNRPC	100	96.226	Meleagris_gallopavo
ENSRNOG00000000493	Snrpc	100	87.421	ENSMICG00000009130	-	100	88.050	Microcebus_murinus
ENSRNOG00000000493	Snrpc	100	84.277	ENSMICG00000036552	-	87	79.487	Microcebus_murinus
ENSRNOG00000000493	Snrpc	100	98.742	ENSMICG00000032183	-	100	98.742	Microcebus_murinus
ENSRNOG00000000493	Snrpc	100	98.742	ENSMICG00000007339	-	100	98.742	Microcebus_murinus
ENSRNOG00000000493	Snrpc	100	100.000	ENSMOCG00000017609	Snrpc	100	100.000	Microtus_ochrogaster
ENSRNOG00000000493	Snrpc	100	98.113	ENSMODG00000013904	-	100	98.113	Monodelphis_domestica
ENSRNOG00000000493	Snrpc	100	100.000	MGP_CAROLIEiJ_G0021308	Snrpc	100	100.000	Mus_caroli
ENSRNOG00000000493	Snrpc	100	100.000	ENSMUSG00000024217	Snrpc	100	100.000	Mus_musculus
ENSRNOG00000000493	Snrpc	74	100.000	MGP_SPRETEiJ_G0022221	-	98	100.000	Mus_spretus
ENSRNOG00000000493	Snrpc	100	97.484	ENSMPUG00000003210	SNRPC	100	97.484	Mustela_putorius_furo
ENSRNOG00000000493	Snrpc	100	97.484	ENSMLUG00000002488	SNRPC	100	97.484	Myotis_lucifugus
ENSRNOG00000000493	Snrpc	100	100.000	ENSNGAG00000019686	Snrpc	100	100.000	Nannospalax_galili
ENSRNOG00000000493	Snrpc	100	99.371	ENSNLEG00000034810	SNRPC	100	99.371	Nomascus_leucogenys
ENSRNOG00000000493	Snrpc	89	98.592	ENSMEUG00000009300	SNRPC	100	98.592	Notamacropus_eugenii
ENSRNOG00000000493	Snrpc	100	98.113	ENSODEG00000019633	-	100	98.113	Octodon_degus
ENSRNOG00000000493	Snrpc	100	99.371	ENSODEG00000020370	-	100	99.371	Octodon_degus
ENSRNOG00000000493	Snrpc	100	99.371	ENSODEG00000017080	-	100	99.371	Octodon_degus
ENSRNOG00000000493	Snrpc	77	93.496	ENSODEG00000006008	-	88	93.496	Octodon_degus
ENSRNOG00000000493	Snrpc	100	98.742	ENSODEG00000020201	-	100	98.742	Octodon_degus
ENSRNOG00000000493	Snrpc	100	99.371	ENSODEG00000018985	-	100	99.371	Octodon_degus
ENSRNOG00000000493	Snrpc	91	94.595	ENSOANG00000003405	SNRPC	100	94.595	Ornithorhynchus_anatinus
ENSRNOG00000000493	Snrpc	100	98.113	ENSOCUG00000026430	-	99	98.113	Oryctolagus_cuniculus
ENSRNOG00000000493	Snrpc	100	96.855	ENSOCUG00000023292	-	100	96.855	Oryctolagus_cuniculus
ENSRNOG00000000493	Snrpc	100	99.371	ENSOCUG00000026668	-	100	99.371	Oryctolagus_cuniculus
ENSRNOG00000000493	Snrpc	100	97.484	ENSOGAG00000026269	-	100	97.484	Otolemur_garnettii
ENSRNOG00000000493	Snrpc	97	83.766	ENSOGAG00000028405	-	99	79.221	Otolemur_garnettii
ENSRNOG00000000493	Snrpc	99	98.726	ENSOGAG00000008755	-	88	98.726	Otolemur_garnettii
ENSRNOG00000000493	Snrpc	100	99.371	ENSOARG00000010823	SNRPC	100	99.371	Ovis_aries
ENSRNOG00000000493	Snrpc	100	99.371	ENSPPAG00000043871	SNRPC	100	99.371	Pan_paniscus
ENSRNOG00000000493	Snrpc	96	60.390	ENSPPRG00000016017	-	86	54.902	Panthera_pardus
ENSRNOG00000000493	Snrpc	100	99.371	ENSPPRG00000008647	-	100	99.371	Panthera_pardus
ENSRNOG00000000493	Snrpc	97	63.226	ENSPTIG00000013329	-	62	81.053	Panthera_tigris_altaica
ENSRNOG00000000493	Snrpc	100	99.371	ENSPTIG00000021867	-	100	99.371	Panthera_tigris_altaica
ENSRNOG00000000493	Snrpc	100	99.371	ENSPTRG00000018070	SNRPC	100	99.371	Pan_troglodytes
ENSRNOG00000000493	Snrpc	100	89.308	ENSPANG00000018228	-	94	89.308	Papio_anubis
ENSRNOG00000000493	Snrpc	100	99.371	ENSPANG00000022802	-	100	99.371	Papio_anubis
ENSRNOG00000000493	Snrpc	99	95.541	ENSPSIG00000004876	SNRPC	77	95.541	Pelodiscus_sinensis
ENSRNOG00000000493	Snrpc	100	100.000	ENSPEMG00000010773	Snrpc	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000000493	Snrpc	100	88.050	ENSPEMG00000002763	-	100	85.535	Peromyscus_maniculatus_bairdii
ENSRNOG00000000493	Snrpc	52	98.795	ENSPPYG00000029902	-	84	98.795	Pongo_abelii
ENSRNOG00000000493	Snrpc	99	98.726	ENSPCAG00000016885	SNRPC	90	98.726	Procavia_capensis
ENSRNOG00000000493	Snrpc	100	99.371	ENSPCOG00000004904	SNRPC	100	99.371	Propithecus_coquereli
ENSRNOG00000000493	Snrpc	99	98.089	ENSPVAG00000015597	SNRPC	87	98.089	Pteropus_vampyrus
ENSRNOG00000000493	Snrpc	100	99.371	ENSRBIG00000037567	-	100	99.371	Rhinopithecus_bieti
ENSRNOG00000000493	Snrpc	100	98.742	ENSRBIG00000022998	-	100	98.742	Rhinopithecus_bieti
ENSRNOG00000000493	Snrpc	100	98.742	ENSRBIG00000014819	-	100	98.742	Rhinopithecus_bieti
ENSRNOG00000000493	Snrpc	100	89.937	ENSRBIG00000036353	-	83	89.937	Rhinopithecus_bieti
ENSRNOG00000000493	Snrpc	100	99.371	ENSRROG00000041300	SNRPC	100	99.371	Rhinopithecus_roxellana
ENSRNOG00000000493	Snrpc	100	99.371	ENSSBOG00000031528	-	100	99.371	Saimiri_boliviensis_boliviensis
ENSRNOG00000000493	Snrpc	98	82.051	ENSSBOG00000023189	-	91	82.051	Saimiri_boliviensis_boliviensis
ENSRNOG00000000493	Snrpc	95	82.119	ENSSBOG00000032361	-	66	80.208	Saimiri_boliviensis_boliviensis
ENSRNOG00000000493	Snrpc	98	80.769	ENSSBOG00000032882	-	93	80.769	Saimiri_boliviensis_boliviensis
ENSRNOG00000000493	Snrpc	99	98.089	ENSSHAG00000000945	-	87	98.089	Sarcophilus_harrisii
ENSRNOG00000000493	Snrpc	100	75.472	ENSSARG00000008970	SNRPC	89	75.472	Sorex_araneus
ENSRNOG00000000493	Snrpc	100	97.484	ENSSPUG00000002502	SNRPC	100	97.484	Sphenodon_punctatus
ENSRNOG00000000493	Snrpc	100	99.371	ENSSSCG00000001531	SNRPC	100	99.371	Sus_scrofa
ENSRNOG00000000493	Snrpc	100	96.855	ENSTGUG00000001773	SNRPC	100	96.855	Taeniopygia_guttata
ENSRNOG00000000493	Snrpc	89	72.535	ENSTBEG00000016759	-	79	72.535	Tupaia_belangeri
ENSRNOG00000000493	Snrpc	98	91.667	ENSTBEG00000013022	-	100	91.667	Tupaia_belangeri
ENSRNOG00000000493	Snrpc	100	97.484	ENSTTRG00000007827	SNRPC	87	97.484	Tursiops_truncatus
ENSRNOG00000000493	Snrpc	75	98.319	ENSUAMG00000014125	SNRPC	80	98.319	Ursus_americanus
ENSRNOG00000000493	Snrpc	100	88.764	ENSUMAG00000010869	SNRPC	100	88.764	Ursus_maritimus
ENSRNOG00000000493	Snrpc	89	73.944	ENSVPAG00000003106	SNRPC	79	73.944	Vicugna_pacos
ENSRNOG00000000493	Snrpc	100	98.113	ENSVVUG00000021947	-	100	98.113	Vulpes_vulpes
ENSRNOG00000000493	Snrpc	97	94.156	ENSVVUG00000010467	-	87	94.231	Vulpes_vulpes
ENSRNOG00000000493	Snrpc	100	89.308	ENSXETG00000024721	snrpc	100	89.308	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	-	IEA	Component
GO:0000387	spliceosomal snRNP assembly	-	IEA	Process
GO:0000387	spliceosomal snRNP assembly	-	ISO	Process
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003727	single-stranded RNA binding	-	IEA	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0005634	nucleus	16502463.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	16502463.	IDA	Component
GO:0005685	U1 snRNP	-	ISO	Component
GO:0005685	U1 snRNP	-	ISS	Component
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008270	zinc ion binding	-	ISO	Function
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0030619	U1 snRNA binding	-	IEA	Function
GO:0030619	U1 snRNA binding	-	ISO	Function
GO:0030627	pre-mRNA 5'-splice site binding	21873635.	IBA	Function
GO:0042803	protein homodimerization activity	-	IEA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0071004	U2-type prespliceosome	-	IEA	Component
GO:1990446	U1 snRNP binding	16502463.	IDA	Function