EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000841 (Gene tree)
Gene ID: 114612
Gene Symbol: Ddx39b
Alias: Bat1|Bat1a|D17H6S81E-1|D20H6S81e|p47
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 12461 bases
Position: chr20:4806108-4818568
Accession: 70923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000075517	ResIII	PF04851.15	1.1e-07	1	1
ENSRNOP00000001115	ResIII	PF04851.15	1.3e-07	1	1
ENSRNOP00000075517	DEAD	PF00270.29	6.3e-39	1	1
ENSRNOP00000001115	DEAD	PF00270.29	6.7e-39	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000087615	-	1484	-	-	- (aa)	-	-
ENSRNOT00000001115	-	1700	-	ENSRNOP00000001115	428 (aa)	-	Q63413
ENSRNOT00000077809	-	1626	-	-	- (aa)	-	-
ENSRNOT00000080174	-	1594	-	ENSRNOP00000075517	399 (aa)	-	A0A0G2KAT4
ENSRNOT00000082233	-	1602	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000000841's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000841's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000000841	Ddx39b	90	37.017	ENSRNOG00000053932	Ddx6	79	35.659
ENSRNOG00000000841	Ddx39b	85	34.795	ENSRNOG00000007838	Ddx47	75	35.447
ENSRNOG00000000841	Ddx39b	77	30.029	ENSRNOG00000030680	Ddx5	55	30.029
ENSRNOG00000000841	Ddx39b	92	36.802	ENSRNOG00000030628	Eif4a1	95	36.802
ENSRNOG00000000841	Ddx39b	86	38.919	ENSRNOG00000001815	Eif4a2	90	38.919
ENSRNOG00000000841	Ddx39b	97	30.260	ENSRNOG00000042451	Ddx59	66	30.260
ENSRNOG00000000841	Ddx39b	91	33.083	ENSRNOG00000018033	Ddx19a	82	33.083
ENSRNOG00000000841	Ddx39b	85	31.714	ENSRNOG00000012260	Ddx25	82	31.773
ENSRNOG00000000841	Ddx39b	86	33.807	ENSRNOG00000008081	Ddx27	53	31.785
ENSRNOG00000000841	Ddx39b	85	38.356	ENSRNOG00000045791	Eif4a3	88	38.356
ENSRNOG00000000841	Ddx39b	100	90.421	ENSRNOG00000004373	Ddx39a	100	90.421
ENSRNOG00000000841	Ddx39b	87	33.711	ENSRNOG00000022368	Ddx49	78	33.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000841	Ddx39b	100	99.533	ENSG00000198563	DDX39B	100	99.533	Homo_sapiens
ENSRNOG00000000841	Ddx39b	100	99.299	ENSAMEG00000009508	DDX39B	99	99.299	Ailuropoda_melanoleuca
ENSRNOG00000000841	Ddx39b	99	93.443	ENSACIG00000004534	ddx39b	98	93.443	Amphilophus_citrinellus
ENSRNOG00000000841	Ddx39b	100	92.593	ENSATEG00000012366	ddx39b	100	92.593	Anabas_testudineus
ENSRNOG00000000841	Ddx39b	100	96.970	ENSACAG00000012240	DDX39B	100	96.970	Anolis_carolinensis
ENSRNOG00000000841	Ddx39b	100	99.533	ENSANAG00000030372	DDX39B	100	99.533	Aotus_nancymaae
ENSRNOG00000000841	Ddx39b	99	90.553	ENSACLG00000018759	ddx39b	99	90.553	Astatotilapia_calliptera
ENSRNOG00000000841	Ddx39b	100	92.661	ENSAMXG00000017837	ddx39b	100	92.661	Astyanax_mexicanus
ENSRNOG00000000841	Ddx39b	100	99.299	ENSBTAG00000014490	DDX39B	100	99.299	Bos_taurus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSCJAG00000003152	DDX39B	100	99.533	Callithrix_jacchus
ENSRNOG00000000841	Ddx39b	100	99.299	ENSCAFG00000000509	DDX39B	100	100.000	Canis_familiaris
ENSRNOG00000000841	Ddx39b	100	99.299	ENSCAFG00020020530	DDX39B	100	99.299	Canis_lupus_dingo
ENSRNOG00000000841	Ddx39b	100	99.299	ENSCHIG00000004579	DDX39B	100	99.299	Capra_hircus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSTSYG00000010226	-	100	99.533	Carlito_syrichta
ENSRNOG00000000841	Ddx39b	100	85.047	ENSTSYG00000029741	-	91	87.619	Carlito_syrichta
ENSRNOG00000000841	Ddx39b	100	99.299	ENSCAPG00000010066	DDX39B	100	99.299	Cavia_aperea
ENSRNOG00000000841	Ddx39b	100	99.299	ENSCPOG00000002335	DDX39B	100	99.299	Cavia_porcellus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSCCAG00000027897	DDX39B	100	99.533	Cebus_capucinus
ENSRNOG00000000841	Ddx39b	99	89.882	ENSCATG00000043709	DDX39B	99	89.882	Cercocebus_atys
ENSRNOG00000000841	Ddx39b	100	99.299	ENSCLAG00000014555	DDX39B	100	99.299	Chinchilla_lanigera
ENSRNOG00000000841	Ddx39b	99	99.294	ENSCSAG00000008517	DDX39B	100	99.294	Chlorocebus_sabaeus
ENSRNOG00000000841	Ddx39b	64	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
ENSRNOG00000000841	Ddx39b	100	99.533	ENSCANG00000041217	DDX39B	100	99.533	Colobus_angolensis_palliatus
ENSRNOG00000000841	Ddx39b	83	84.358	ENSCGRG00001021916	-	89	84.358	Cricetulus_griseus_chok1gshd
ENSRNOG00000000841	Ddx39b	61	99.184	ENSCGRG00001017315	-	95	99.029	Cricetulus_griseus_chok1gshd
ENSRNOG00000000841	Ddx39b	51	98.537	ENSCGRG00000000078	-	90	98.537	Cricetulus_griseus_crigri
ENSRNOG00000000841	Ddx39b	61	99.184	ENSCGRG00000012479	-	76	99.184	Cricetulus_griseus_crigri
ENSRNOG00000000841	Ddx39b	100	92.184	ENSDARG00000036069	ddx39b	100	92.184	Danio_rerio
ENSRNOG00000000841	Ddx39b	100	99.533	ENSDNOG00000010215	DDX39B	100	99.533	Dasypus_novemcinctus
ENSRNOG00000000841	Ddx39b	94	99.198	ENSDORG00000004985	Ddx39b	100	99.198	Dipodomys_ordii
ENSRNOG00000000841	Ddx39b	94	86.364	ENSETEG00000009649	DDX39B	87	86.364	Echinops_telfairi
ENSRNOG00000000841	Ddx39b	100	99.533	ENSEASG00005017156	DDX39B	100	99.533	Equus_asinus_asinus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSECAG00000007750	DDX39B	100	99.533	Equus_caballus
ENSRNOG00000000841	Ddx39b	100	91.860	ENSELUG00000017904	ddx39b	100	91.860	Esox_lucius
ENSRNOG00000000841	Ddx39b	100	99.299	ENSFCAG00000004497	DDX39B	100	99.299	Felis_catus
ENSRNOG00000000841	Ddx39b	100	99.299	ENSFDAG00000011074	DDX39B	100	99.299	Fukomys_damarensis
ENSRNOG00000000841	Ddx39b	74	99.684	ENSGAGG00000001300	-	80	99.684	Gopherus_agassizii
ENSRNOG00000000841	Ddx39b	100	99.533	ENSGGOG00000005989	DDX39B	100	99.533	Gorilla_gorilla
ENSRNOG00000000841	Ddx39b	51	87.560	ENSHBUG00000022054	-	77	87.560	Haplochromis_burtoni
ENSRNOG00000000841	Ddx39b	100	99.299	ENSHGLG00000019248	DDX39B	100	99.299	Heterocephalus_glaber_female
ENSRNOG00000000841	Ddx39b	100	99.299	ENSHGLG00100011850	DDX39B	100	99.299	Heterocephalus_glaber_male
ENSRNOG00000000841	Ddx39b	100	91.514	ENSIPUG00000015733	DDX39B	94	91.514	Ictalurus_punctatus
ENSRNOG00000000841	Ddx39b	100	99.065	ENSSTOG00000012838	DDX39B	100	99.065	Ictidomys_tridecemlineatus
ENSRNOG00000000841	Ddx39b	100	98.832	ENSJJAG00000005660	-	100	98.832	Jaculus_jaculus
ENSRNOG00000000841	Ddx39b	71	79.078	ENSLBEG00000017177	-	81	79.078	Labrus_bergylta
ENSRNOG00000000841	Ddx39b	99	78.014	ENSLBEG00000012254	ddx39b	99	77.986	Labrus_bergylta
ENSRNOG00000000841	Ddx39b	100	89.631	ENSLACG00000002110	DDX39B	100	89.631	Latimeria_chalumnae
ENSRNOG00000000841	Ddx39b	100	99.299	ENSLAFG00000014202	DDX39B	100	99.299	Loxodonta_africana
ENSRNOG00000000841	Ddx39b	100	99.533	ENSMFAG00000034233	DDX39B	100	99.533	Macaca_fascicularis
ENSRNOG00000000841	Ddx39b	100	99.533	ENSMMUG00000008839	DDX39B	100	99.533	Macaca_mulatta
ENSRNOG00000000841	Ddx39b	100	99.533	ENSMNEG00000041059	DDX39B	100	99.533	Macaca_nemestrina
ENSRNOG00000000841	Ddx39b	100	99.533	ENSMLEG00000043791	DDX39B	100	99.533	Mandrillus_leucophaeus
ENSRNOG00000000841	Ddx39b	99	90.553	ENSMZEG00005017654	ddx39b	99	90.553	Maylandia_zebra
ENSRNOG00000000841	Ddx39b	100	99.299	ENSMAUG00000008059	Ddx39b	100	99.299	Mesocricetus_auratus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSMICG00000017349	DDX39B	100	99.533	Microcebus_murinus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSMOCG00000011169	Ddx39b	100	99.533	Microtus_ochrogaster
ENSRNOG00000000841	Ddx39b	98	95.000	ENSMODG00000015791	DDX39B	96	94.103	Monodelphis_domestica
ENSRNOG00000000841	Ddx39b	100	100.000	ENSMUSG00000019432	Ddx39b	100	100.000	Mus_musculus
ENSRNOG00000000841	Ddx39b	100	100.000	MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	Mus_pahari
ENSRNOG00000000841	Ddx39b	100	100.000	MGP_SPRETEiJ_G0022424	Ddx39b	100	100.000	Mus_spretus
ENSRNOG00000000841	Ddx39b	100	99.299	ENSMPUG00000011407	DDX39B	100	99.299	Mustela_putorius_furo
ENSRNOG00000000841	Ddx39b	73	100.000	ENSMLUG00000001681	DDX39B	100	100.000	Myotis_lucifugus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSNGAG00000022948	Ddx39b	100	99.533	Nannospalax_galili
ENSRNOG00000000841	Ddx39b	100	75.467	ENSNLEG00000006094	DDX39B	100	75.467	Nomascus_leucogenys
ENSRNOG00000000841	Ddx39b	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSRNOG00000000841	Ddx39b	100	99.299	ENSOPRG00000011923	DDX39B	100	99.299	Ochotona_princeps
ENSRNOG00000000841	Ddx39b	100	99.065	ENSODEG00000018083	DDX39B	100	99.065	Octodon_degus
ENSRNOG00000000841	Ddx39b	100	91.667	ENSONIG00000004740	ddx39b	100	91.667	Oreochromis_niloticus
ENSRNOG00000000841	Ddx39b	59	98.312	ENSOANG00000008361	DDX39B	95	98.312	Ornithorhynchus_anatinus
ENSRNOG00000000841	Ddx39b	100	95.711	ENSOCUG00000024126	DDX39B	100	95.711	Oryctolagus_cuniculus
ENSRNOG00000000841	Ddx39b	100	98.135	ENSOGAG00000028850	-	100	98.135	Otolemur_garnettii
ENSRNOG00000000841	Ddx39b	84	91.711	ENSOGAG00000009067	-	100	98.457	Otolemur_garnettii
ENSRNOG00000000841	Ddx39b	100	99.299	ENSOARG00000008787	DDX39B	98	99.299	Ovis_aries
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPPAG00000043072	DDX39B	100	99.533	Pan_paniscus
ENSRNOG00000000841	Ddx39b	100	99.299	ENSPPRG00000001913	DDX39B	100	99.299	Panthera_pardus
ENSRNOG00000000841	Ddx39b	100	98.598	ENSPTIG00000017669	DDX39B	100	98.598	Panthera_tigris_altaica
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPTRG00000032509	DDX39B	100	99.533	Pan_troglodytes
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPANG00000018609	DDX39B	100	99.533	Papio_anubis
ENSRNOG00000000841	Ddx39b	100	90.618	ENSPKIG00000011324	ddx39b	100	91.304	Paramormyrops_kingsleyae
ENSRNOG00000000841	Ddx39b	100	99.766	ENSPEMG00000016905	Ddx39b	100	99.766	Peromyscus_maniculatus_bairdii
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPCIG00000017572	DDX39B	100	99.533	Phascolarctos_cinereus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPPYG00000016433	DDX39B	100	99.533	Pongo_abelii
ENSRNOG00000000841	Ddx39b	66	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPCOG00000018656	DDX39B	100	99.533	Propithecus_coquereli
ENSRNOG00000000841	Ddx39b	100	99.533	ENSPVAG00000004653	DDX39B	100	99.533	Pteropus_vampyrus
ENSRNOG00000000841	Ddx39b	99	82.670	ENSPNYG00000010382	ddx39b	98	82.670	Pundamilia_nyererei
ENSRNOG00000000841	Ddx39b	100	92.202	ENSPNAG00000026926	ddx39b	100	92.202	Pygocentrus_nattereri
ENSRNOG00000000841	Ddx39b	100	89.252	ENSRBIG00000031309	DDX39B	100	89.252	Rhinopithecus_bieti
ENSRNOG00000000841	Ddx39b	100	99.533	ENSRROG00000039517	DDX39B	100	99.533	Rhinopithecus_roxellana
ENSRNOG00000000841	Ddx39b	100	89.252	ENSSBOG00000035513	-	100	89.252	Saimiri_boliviensis_boliviensis
ENSRNOG00000000841	Ddx39b	100	99.533	ENSSHAG00000003209	DDX39B	100	99.533	Sarcophilus_harrisii
ENSRNOG00000000841	Ddx39b	100	91.076	ENSSFOG00015016107	ddx39b	100	91.533	Scleropages_formosus
ENSRNOG00000000841	Ddx39b	100	93.056	ENSSDUG00000011557	ddx39b	100	93.287	Seriola_dumerili
ENSRNOG00000000841	Ddx39b	100	92.824	ENSSLDG00000015763	ddx39b	100	93.056	Seriola_lalandi_dorsalis
ENSRNOG00000000841	Ddx39b	94	87.701	ENSSARG00000005245	DDX39B	100	87.701	Sorex_araneus
ENSRNOG00000000841	Ddx39b	100	97.664	ENSSPUG00000012805	DDX39B	100	97.664	Sphenodon_punctatus
ENSRNOG00000000841	Ddx39b	100	99.533	ENSSSCG00000001400	DDX39B	100	100.000	Sus_scrofa
ENSRNOG00000000841	Ddx39b	100	76.402	ENSTBEG00000003721	DDX39B	100	76.402	Tupaia_belangeri
ENSRNOG00000000841	Ddx39b	100	90.993	ENSTTRG00000014074	DDX39B	100	90.993	Tursiops_truncatus
ENSRNOG00000000841	Ddx39b	100	86.512	ENSUAMG00000027335	DDX39B	100	86.512	Ursus_americanus
ENSRNOG00000000841	Ddx39b	100	90.421	ENSUMAG00000015124	DDX39B	100	90.421	Ursus_maritimus
ENSRNOG00000000841	Ddx39b	66	98.230	ENSVPAG00000009167	-	74	98.230	Vicugna_pacos
ENSRNOG00000000841	Ddx39b	100	99.299	ENSVVUG00000019518	DDX39B	99	99.299	Vulpes_vulpes
ENSRNOG00000000841	Ddx39b	100	83.953	ENSXETG00000002498	ddx39b	99	83.953	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	IEA	Process
GO:0000245	spliceosomal complex assembly	-	ISO	Process
GO:0000346	transcription export complex	-	IEA	Component
GO:0000346	transcription export complex	-	ISO	Component
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0001889	liver development	1618789.	IEP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005687	U4 snRNP	-	IEA	Component
GO:0005687	U4 snRNP	-	ISO	Component
GO:0005688	U6 snRNP	-	IEA	Component
GO:0005688	U6 snRNP	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006406	mRNA export from nucleus	-	IEA	Process
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0008186	RNA-dependent ATPase activity	-	ISO	Function
GO:0008380	RNA splicing	-	ISO	Process
GO:0010501	RNA secondary structure unwinding	-	IEA	Process
GO:0010501	RNA secondary structure unwinding	-	ISO	Process
GO:0016363	nuclear matrix	1618789.	IDA	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016887	ATPase activity	-	ISO	Function
GO:0017070	U6 snRNA binding	-	IEA	Function
GO:0017070	U6 snRNA binding	-	ISO	Function
GO:0030621	U4 snRNA binding	-	IEA	Function
GO:0030621	U4 snRNA binding	-	ISO	Function
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISS	Process
GO:0032991	protein-containing complex	10220587.	IDA	Component
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043008	ATP-dependent protein binding	-	IEA	Function
GO:0043008	ATP-dependent protein binding	-	ISO	Function
GO:0044877	protein-containing complex binding	10220587.	IDA	Function
GO:0045727	positive regulation of translation	20116367.	IMP	Process
GO:0046784	viral mRNA export from host cell nucleus	-	IEA	Process
GO:0046784	viral mRNA export from host cell nucleus	-	ISO	Process
GO:0061051	positive regulation of cell growth involved in cardiac muscle cell development	20116367.	IMP	Process
GO:1904707	positive regulation of vascular smooth muscle cell proliferation	23246467.	IMP	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISO	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISS	Process
GO:2000573	positive regulation of DNA biosynthetic process	22446327.	IMP	Process