EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000861 (Gene tree)
Gene ID: 367944
Gene Symbol: Zic3
Alias: LOC367944|RGD1561261
Full Name: Zic family member 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 10580 bases
Position: chrX:140878216-140888795
Accession: 1561261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000067915	zf-C2H2	PF00096.26	1.9e-21	1	4
ENSRNOP00000067915	zf-C2H2	PF00096.26	1.9e-21	2	4
ENSRNOP00000067915	zf-C2H2	PF00096.26	1.9e-21	3	4
ENSRNOP00000067915	zf-C2H2	PF00096.26	1.9e-21	4	4
ENSRNOP00000068130	zf-C2H2	PF00096.26	9e-21	1	4
ENSRNOP00000068130	zf-C2H2	PF00096.26	9e-21	2	4
ENSRNOP00000068130	zf-C2H2	PF00096.26	9e-21	3	4
ENSRNOP00000068130	zf-C2H2	PF00096.26	9e-21	4	4
ENSRNOP00000068130	zf-met	PF12874.7	0.00041	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000075840	-	3662	XM_006257586	ENSRNOP00000067915	466 (aa)	XP_006257648	A0A096MIX7
ENSRNOT00000077026	-	1936	-	ENSRNOP00000068130	437 (aa)	-	A0A096MJH5

Gene Model

Click here to download ENSRNOG00000000861's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000861's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000000861	Zic3	52	38.182	ENSRNOG00000006684	Zfp317	91	41.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000861	Zic3	100	97.859	ENSG00000156925	ZIC3	100	97.859	Homo_sapiens
ENSRNOG00000000861	Zic3	100	97.645	ENSANAG00000019614	ZIC3	100	97.645	Aotus_nancymaae
ENSRNOG00000000861	Zic3	100	97.216	ENSCJAG00000013792	ZIC3	100	97.216	Callithrix_jacchus
ENSRNOG00000000861	Zic3	100	97.216	ENSCAFG00000018979	ZIC3	100	97.216	Canis_familiaris
ENSRNOG00000000861	Zic3	100	94.861	ENSTSYG00000003356	ZIC3	100	94.861	Carlito_syrichta
ENSRNOG00000000861	Zic3	53	98.374	ENSCPOG00000002374	ZIC3	100	98.374	Cavia_porcellus
ENSRNOG00000000861	Zic3	100	97.430	ENSCCAG00000025983	ZIC3	100	97.430	Cebus_capucinus
ENSRNOG00000000861	Zic3	100	97.430	ENSCATG00000036569	ZIC3	100	97.430	Cercocebus_atys
ENSRNOG00000000861	Zic3	100	98.069	ENSCLAG00000001934	ZIC3	100	98.069	Chinchilla_lanigera
ENSRNOG00000000861	Zic3	93	86.468	ENSCPBG00000026115	ZIC3	100	86.468	Chrysemys_picta_bellii
ENSRNOG00000000861	Zic3	100	97.216	ENSCANG00000017505	ZIC3	100	97.216	Colobus_angolensis_palliatus
ENSRNOG00000000861	Zic3	100	99.142	ENSCGRG00001024527	Zic3	100	99.142	Cricetulus_griseus_chok1gshd
ENSRNOG00000000861	Zic3	100	97.425	ENSDORG00000025481	Zic3	100	97.425	Dipodomys_ordii
ENSRNOG00000000861	Zic3	100	97.216	ENSFCAG00000025684	ZIC3	100	97.216	Felis_catus
ENSRNOG00000000861	Zic3	80	98.652	ENSFDAG00000014929	ZIC3	100	99.187	Fukomys_damarensis
ENSRNOG00000000861	Zic3	93	84.634	ENSGAGG00000004149	ZIC3	92	79.418	Gopherus_agassizii
ENSRNOG00000000861	Zic3	100	97.859	ENSGGOG00000011914	ZIC3	100	97.859	Gorilla_gorilla
ENSRNOG00000000861	Zic3	100	97.639	ENSHGLG00000006298	ZIC3	100	97.639	Heterocephalus_glaber_female
ENSRNOG00000000861	Zic3	59	76.250	ENSHGLG00100002829	ZIC3	100	77.070	Heterocephalus_glaber_male
ENSRNOG00000000861	Zic3	100	98.712	ENSJJAG00000022714	Zic3	100	98.712	Jaculus_jaculus
ENSRNOG00000000861	Zic3	100	76.017	ENSLACG00000014597	ZIC3	100	76.017	Latimeria_chalumnae
ENSRNOG00000000861	Zic3	88	93.431	ENSLAFG00000007048	ZIC3	100	92.462	Loxodonta_africana
ENSRNOG00000000861	Zic3	100	97.430	ENSMFAG00000027018	ZIC3	100	97.430	Macaca_fascicularis
ENSRNOG00000000861	Zic3	99	96.101	ENSMMUG00000002023	ZIC3	95	96.101	Macaca_mulatta
ENSRNOG00000000861	Zic3	100	97.430	ENSMNEG00000040682	ZIC3	100	97.430	Macaca_nemestrina
ENSRNOG00000000861	Zic3	100	97.430	ENSMLEG00000004378	ZIC3	100	97.430	Mandrillus_leucophaeus
ENSRNOG00000000861	Zic3	100	99.356	ENSMAUG00000009402	Zic3	100	99.356	Mesocricetus_auratus
ENSRNOG00000000861	Zic3	100	97.645	ENSMICG00000042529	ZIC3	100	97.645	Microcebus_murinus
ENSRNOG00000000861	Zic3	100	98.927	ENSMOCG00000020544	Zic3	100	98.927	Microtus_ochrogaster
ENSRNOG00000000861	Zic3	100	99.571	MGP_CAROLIEiJ_G0033101	Zic3	100	100.000	Mus_caroli
ENSRNOG00000000861	Zic3	100	99.571	ENSMUSG00000067860	Zic3	100	100.000	Mus_musculus
ENSRNOG00000000861	Zic3	100	99.571	MGP_PahariEiJ_G0031644	Zic3	100	100.000	Mus_pahari
ENSRNOG00000000861	Zic3	100	99.571	MGP_SPRETEiJ_G0034256	Zic3	100	100.000	Mus_spretus
ENSRNOG00000000861	Zic3	100	98.283	ENSNGAG00000023346	Zic3	100	98.283	Nannospalax_galili
ENSRNOG00000000861	Zic3	79	98.221	ENSNLEG00000003005	-	100	98.221	Nomascus_leucogenys
ENSRNOG00000000861	Zic3	100	97.854	ENSODEG00000005556	ZIC3	100	97.854	Octodon_degus
ENSRNOG00000000861	Zic3	100	97.859	ENSPPAG00000030013	ZIC3	100	97.859	Pan_paniscus
ENSRNOG00000000861	Zic3	100	97.216	ENSPPRG00000010839	ZIC3	100	97.216	Panthera_pardus
ENSRNOG00000000861	Zic3	100	97.859	ENSPTRG00000043849	ZIC3	100	97.859	Pan_troglodytes
ENSRNOG00000000861	Zic3	100	97.430	ENSPANG00000011357	ZIC3	100	97.430	Papio_anubis
ENSRNOG00000000861	Zic3	100	72.863	ENSPKIG00000017705	zic3	100	72.863	Paramormyrops_kingsleyae
ENSRNOG00000000861	Zic3	62	90.753	ENSPSIG00000011896	ZIC3	99	90.753	Pelodiscus_sinensis
ENSRNOG00000000861	Zic3	100	99.356	ENSPEMG00000022168	Zic3	100	99.356	Peromyscus_maniculatus_bairdii
ENSRNOG00000000861	Zic3	100	97.216	ENSPCOG00000021557	ZIC3	100	97.216	Propithecus_coquereli
ENSRNOG00000000861	Zic3	100	97.216	ENSRBIG00000030660	ZIC3	100	97.216	Rhinopithecus_bieti
ENSRNOG00000000861	Zic3	100	97.216	ENSRROG00000028410	ZIC3	100	97.216	Rhinopithecus_roxellana
ENSRNOG00000000861	Zic3	100	97.859	ENSSBOG00000024684	ZIC3	100	97.859	Saimiri_boliviensis_boliviensis
ENSRNOG00000000861	Zic3	99	74.034	ENSSFOG00015011731	zic3	100	74.034	Scleropages_formosus
ENSRNOG00000000861	Zic3	99	68.240	ENSSFOG00015008079	zic3	100	68.240	Scleropages_formosus
ENSRNOG00000000861	Zic3	83	82.741	ENSTGUG00000002155	ZIC3	100	82.741	Taeniopygia_guttata
ENSRNOG00000000861	Zic3	100	97.216	ENSVVUG00000021378	ZIC3	100	97.216	Vulpes_vulpes
ENSRNOG00000000861	Zic3	100	76.546	ENSXETG00000024458	zic3	100	76.546	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	IEA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0001947	heart looping	-	IEA	Process
GO:0001947	heart looping	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0007368	determination of left/right symmetry	-	ISO	Process
GO:0007389	pattern specification process	-	ISO	Process
GO:0007417	central nervous system development	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0009952	anterior/posterior pattern specification	-	IEA	Process
GO:0009952	anterior/posterior pattern specification	-	ISO	Process
GO:0030324	lung development	-	IEA	Process
GO:0030324	lung development	-	ISO	Process
GO:0035469	determination of pancreatic left/right asymmetry	-	IEA	Process
GO:0035469	determination of pancreatic left/right asymmetry	-	ISO	Process
GO:0035545	determination of left/right asymmetry in nervous system	-	IEA	Process
GO:0035545	determination of left/right asymmetry in nervous system	-	ISO	Process
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0071907	determination of digestive tract left/right asymmetry	-	IEA	Process
GO:0071907	determination of digestive tract left/right asymmetry	-	ISO	Process
GO:0071910	determination of liver left/right asymmetry	-	IEA	Process
GO:0071910	determination of liver left/right asymmetry	-	ISO	Process