EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000867 (Gene tree)
Gene ID: 25009
Gene Symbol: Vars
Alias: Bat6|G7a|TrsVal|Vars2|valRS
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 14703 bases
Position: chr20:4993560-5008262
Accession: 3950
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001160	tRNA-synt_1g	PF09334.11	3.6e-11	1	1
ENSRNOP00000072696	tRNA-synt_1g	PF09334.11	3.6e-11	1	1
ENSRNOP00000001160	Anticodon_1	PF08264.13	8.7e-33	1	1
ENSRNOP00000072696	Anticodon_1	PF08264.13	8.7e-33	1	1
ENSRNOP00000001160	tRNA-synt_1	PF00133.22	5.7e-202	1	1
ENSRNOP00000072696	tRNA-synt_1	PF00133.22	5.7e-202	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000081628	-	877	-	ENSRNOP00000069473	188 (aa)	-	A0A0G2JVG2
ENSRNOT00000087861	-	4023	XM_006256047	ENSRNOP00000072696	1264 (aa)	XP_006256109	Q04462
ENSRNOT00000001160	-	3994	-	ENSRNOP00000001160	1264 (aa)	-	Q04462
ENSRNOT00000087594	-	969	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000000867's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000000867	Vars	83	50.712	ENSRNOG00000000833	Vars2	92	52.663

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000867	Vars	100	93.434	ENSG00000204394	VARS	100	93.434	Homo_sapiens
ENSRNOG00000000867	Vars	98	64.234	ENSAPOG00000020691	vars	99	63.913	Acanthochromis_polyacanthus
ENSRNOG00000000867	Vars	98	64.234	ENSAPOG00000020921	vars	99	63.913	Acanthochromis_polyacanthus
ENSRNOG00000000867	Vars	100	93.755	ENSAMEG00000006417	VARS	100	93.755	Ailuropoda_melanoleuca
ENSRNOG00000000867	Vars	100	64.996	ENSACIG00000013752	vars	100	65.173	Amphilophus_citrinellus
ENSRNOG00000000867	Vars	100	64.546	ENSAOCG00000002447	vars	100	63.887	Amphiprion_ocellaris
ENSRNOG00000000867	Vars	100	64.391	ENSAPEG00000010638	vars	99	64.564	Amphiprion_percula
ENSRNOG00000000867	Vars	100	64.673	ENSATEG00000020219	vars	100	64.280	Anabas_testudineus
ENSRNOG00000000867	Vars	90	69.757	ENSACAG00000029133	-	99	70.909	Anolis_carolinensis
ENSRNOG00000000867	Vars	100	93.434	ENSANAG00000015453	VARS	100	93.434	Aotus_nancymaae
ENSRNOG00000000867	Vars	100	64.396	ENSACLG00000025699	vars	97	64.569	Astatotilapia_calliptera
ENSRNOG00000000867	Vars	94	66.305	ENSAMXG00000017716	vars	95	66.222	Astyanax_mexicanus
ENSRNOG00000000867	Vars	100	93.829	ENSBTAG00000005631	VARS	100	93.829	Bos_taurus
ENSRNOG00000000867	Vars	100	93.196	ENSCJAG00000002604	VARS	100	93.196	Callithrix_jacchus
ENSRNOG00000000867	Vars	100	93.038	ENSCAFG00000000636	VARS	100	93.038	Canis_familiaris
ENSRNOG00000000867	Vars	94	93.243	ENSCAFG00020020790	VARS	96	93.243	Canis_lupus_dingo
ENSRNOG00000000867	Vars	100	93.987	ENSCHIG00000011008	VARS	100	93.987	Capra_hircus
ENSRNOG00000000867	Vars	100	93.671	ENSTSYG00000001567	VARS	100	93.671	Carlito_syrichta
ENSRNOG00000000867	Vars	91	91.263	ENSCAPG00000013736	VARS	99	91.263	Cavia_aperea
ENSRNOG00000000867	Vars	100	92.009	ENSCPOG00000000870	VARS	100	92.009	Cavia_porcellus
ENSRNOG00000000867	Vars	100	93.196	ENSCCAG00000035656	VARS	100	94.030	Cebus_capucinus
ENSRNOG00000000867	Vars	100	93.275	ENSCATG00000022394	VARS	100	93.275	Cercocebus_atys
ENSRNOG00000000867	Vars	93	86.694	ENSCLAG00000009470	VARS	96	86.694	Chinchilla_lanigera
ENSRNOG00000000867	Vars	100	93.513	ENSCSAG00000008784	VARS	100	93.513	Chlorocebus_sabaeus
ENSRNOG00000000867	Vars	77	74.025	ENSCPBG00000007943	VARS	96	74.230	Chrysemys_picta_bellii
ENSRNOG00000000867	Vars	100	93.513	ENSCANG00000033570	VARS	100	93.513	Colobus_angolensis_palliatus
ENSRNOG00000000867	Vars	100	95.807	ENSCGRG00001005686	Vars	100	95.807	Cricetulus_griseus_chok1gshd
ENSRNOG00000000867	Vars	92	90.369	ENSCGRG00000013352	Vars	78	90.369	Cricetulus_griseus_crigri
ENSRNOG00000000867	Vars	100	64.111	ENSCSEG00000019652	vars	100	64.190	Cynoglossus_semilaevis
ENSRNOG00000000867	Vars	100	65.190	ENSCVAG00000022398	vars	100	65.346	Cyprinodon_variegatus
ENSRNOG00000000867	Vars	100	64.619	ENSDARG00000044575	vars	100	65.086	Danio_rerio
ENSRNOG00000000867	Vars	84	92.568	ENSDORG00000016433	Vars	95	92.568	Dipodomys_ordii
ENSRNOG00000000867	Vars	69	86.257	ENSETEG00000003824	VARS	76	86.257	Echinops_telfairi
ENSRNOG00000000867	Vars	57	62.363	ENSEBUG00000004637	vars	100	62.637	Eptatretus_burgeri
ENSRNOG00000000867	Vars	50	71.014	ENSEBUG00000007086	vars	84	69.983	Eptatretus_burgeri
ENSRNOG00000000867	Vars	100	94.304	ENSEASG00005015673	VARS	100	94.304	Equus_asinus_asinus
ENSRNOG00000000867	Vars	100	93.518	ENSECAG00000014620	VARS	100	93.834	Equus_caballus
ENSRNOG00000000867	Vars	78	91.349	ENSEEUG00000004116	VARS	80	91.349	Erinaceus_europaeus
ENSRNOG00000000867	Vars	100	64.456	ENSELUG00000006550	vars	97	64.379	Esox_lucius
ENSRNOG00000000867	Vars	100	93.434	ENSFCAG00000004510	VARS	100	93.434	Felis_catus
ENSRNOG00000000867	Vars	82	92.474	ENSFDAG00000011401	VARS	100	92.474	Fukomys_damarensis
ENSRNOG00000000867	Vars	100	65.190	ENSFHEG00000010672	vars	100	65.423	Fundulus_heteroclitus
ENSRNOG00000000867	Vars	92	66.333	ENSGMOG00000014908	vars	97	66.583	Gadus_morhua
ENSRNOG00000000867	Vars	100	65.370	ENSGAFG00000021630	vars	100	65.525	Gambusia_affinis
ENSRNOG00000000867	Vars	92	66.165	ENSGACG00000009601	vars	98	66.000	Gasterosteus_aculeatus
ENSRNOG00000000867	Vars	50	64.929	ENSGAGG00000006508	-	91	64.297	Gopherus_agassizii
ENSRNOG00000000867	Vars	100	93.592	ENSGGOG00000011364	VARS	100	93.592	Gorilla_gorilla
ENSRNOG00000000867	Vars	100	64.396	ENSHBUG00000017151	vars	97	64.569	Haplochromis_burtoni
ENSRNOG00000000867	Vars	100	91.139	ENSHGLG00000011646	VARS	100	91.377	Heterocephalus_glaber_female
ENSRNOG00000000867	Vars	93	83.472	ENSHGLG00100018062	VARS	100	83.472	Heterocephalus_glaber_male
ENSRNOG00000000867	Vars	99	64.186	ENSHCOG00000012198	vars	99	64.302	Hippocampus_comes
ENSRNOG00000000867	Vars	100	65.292	ENSIPUG00000005218	vars	100	65.292	Ictalurus_punctatus
ENSRNOG00000000867	Vars	100	94.783	ENSSTOG00000013112	VARS	100	94.783	Ictidomys_tridecemlineatus
ENSRNOG00000000867	Vars	100	73.101	ENSJJAG00000015343	-	99	74.378	Jaculus_jaculus
ENSRNOG00000000867	Vars	100	92.405	ENSJJAG00000019749	-	100	92.405	Jaculus_jaculus
ENSRNOG00000000867	Vars	100	65.245	ENSKMAG00000009455	vars	100	65.008	Kryptolebias_marmoratus
ENSRNOG00000000867	Vars	100	64.534	ENSLBEG00000010341	vars	100	64.376	Labrus_bergylta
ENSRNOG00000000867	Vars	94	62.120	ENSLACG00000015232	VARS	99	62.777	Latimeria_chalumnae
ENSRNOG00000000867	Vars	100	66.432	ENSLOCG00000004240	vars	100	66.588	Lepisosteus_oculatus
ENSRNOG00000000867	Vars	100	93.196	ENSLAFG00000023090	VARS	100	93.196	Loxodonta_africana
ENSRNOG00000000867	Vars	100	93.513	ENSMFAG00000001032	VARS	100	93.513	Macaca_fascicularis
ENSRNOG00000000867	Vars	100	93.513	ENSMMUG00000006828	VARS	100	93.513	Macaca_mulatta
ENSRNOG00000000867	Vars	100	93.671	ENSMNEG00000042072	VARS	100	93.671	Macaca_nemestrina
ENSRNOG00000000867	Vars	100	93.592	ENSMLEG00000039307	VARS	100	93.592	Mandrillus_leucophaeus
ENSRNOG00000000867	Vars	100	64.771	ENSMAMG00000003949	vars	100	64.743	Mastacembelus_armatus
ENSRNOG00000000867	Vars	100	64.396	ENSMZEG00005018327	vars	100	64.088	Maylandia_zebra
ENSRNOG00000000867	Vars	100	95.095	ENSMAUG00000006715	Vars	100	95.095	Mesocricetus_auratus
ENSRNOG00000000867	Vars	100	92.801	ENSMICG00000003548	VARS	100	93.532	Microcebus_murinus
ENSRNOG00000000867	Vars	100	92.642	ENSMOCG00000015404	Vars	100	93.117	Microtus_ochrogaster
ENSRNOG00000000867	Vars	100	63.836	ENSMMOG00000015801	vars	100	63.915	Mola_mola
ENSRNOG00000000867	Vars	100	85.839	ENSMODG00000015204	-	100	85.839	Monodelphis_domestica
ENSRNOG00000000867	Vars	99	64.424	ENSMALG00000022532	vars	99	64.519	Monopterus_albus
ENSRNOG00000000867	Vars	100	97.706	MGP_CAROLIEiJ_G0021491	Vars	100	97.706	Mus_caroli
ENSRNOG00000000867	Vars	100	97.864	ENSMUSG00000007029	Vars	100	97.864	Mus_musculus
ENSRNOG00000000867	Vars	100	97.706	MGP_PahariEiJ_G0020486	Vars	100	97.706	Mus_pahari
ENSRNOG00000000867	Vars	100	97.943	MGP_SPRETEiJ_G0022396	Vars	100	97.943	Mus_spretus
ENSRNOG00000000867	Vars	100	93.592	ENSMPUG00000010821	VARS	100	93.592	Mustela_putorius_furo
ENSRNOG00000000867	Vars	78	92.510	ENSMLUG00000013126	VARS	100	93.219	Myotis_lucifugus
ENSRNOG00000000867	Vars	100	94.383	ENSNGAG00000012151	Vars	100	94.383	Nannospalax_galili
ENSRNOG00000000867	Vars	100	64.164	ENSNBRG00000020520	vars	100	64.336	Neolamprologus_brichardi
ENSRNOG00000000867	Vars	100	93.038	ENSNLEG00000006351	VARS	100	93.038	Nomascus_leucogenys
ENSRNOG00000000867	Vars	100	83.228	ENSMEUG00000011378	VARS	100	83.228	Notamacropus_eugenii
ENSRNOG00000000867	Vars	100	93.987	ENSOPRG00000003607	VARS	100	93.987	Ochotona_princeps
ENSRNOG00000000867	Vars	100	91.772	ENSODEG00000017681	VARS	100	91.772	Octodon_degus
ENSRNOG00000000867	Vars	100	65.027	ENSONIG00000013064	vars	99	67.913	Oreochromis_niloticus
ENSRNOG00000000867	Vars	78	78.681	ENSOANG00000005400	VARS	99	78.210	Ornithorhynchus_anatinus
ENSRNOG00000000867	Vars	100	90.679	ENSOCUG00000022463	VARS	100	90.837	Oryctolagus_cuniculus
ENSRNOG00000000867	Vars	100	65.104	ENSORLG00000013063	vars	100	65.355	Oryzias_latipes
ENSRNOG00000000867	Vars	100	65.581	ENSORLG00020003504	vars	100	65.814	Oryzias_latipes_hni
ENSRNOG00000000867	Vars	100	65.555	ENSORLG00015009001	vars	100	65.710	Oryzias_latipes_hsok
ENSRNOG00000000867	Vars	100	65.322	ENSOMEG00000015016	vars	100	65.477	Oryzias_melastigma
ENSRNOG00000000867	Vars	100	93.275	ENSOGAG00000007515	VARS	100	93.275	Otolemur_garnettii
ENSRNOG00000000867	Vars	100	93.671	ENSPPAG00000034012	VARS	100	93.671	Pan_paniscus
ENSRNOG00000000867	Vars	100	93.592	ENSPPRG00000014855	VARS	100	93.592	Panthera_pardus
ENSRNOG00000000867	Vars	85	93.773	ENSPTIG00000010462	VARS	95	93.773	Panthera_tigris_altaica
ENSRNOG00000000867	Vars	100	93.750	ENSPTRG00000017985	VARS	100	93.750	Pan_troglodytes
ENSRNOG00000000867	Vars	100	91.877	ENSPANG00000014565	VARS	100	91.877	Papio_anubis
ENSRNOG00000000867	Vars	100	64.015	ENSPKIG00000016304	vars	100	64.015	Paramormyrops_kingsleyae
ENSRNOG00000000867	Vars	100	65.379	ENSPMGG00000023909	vars	100	65.457	Periophthalmus_magnuspinnatus
ENSRNOG00000000867	Vars	100	96.203	ENSPEMG00000006639	Vars	100	96.203	Peromyscus_maniculatus_bairdii
ENSRNOG00000000867	Vars	100	85.997	ENSPCIG00000018553	VARS	100	85.997	Phascolarctos_cinereus
ENSRNOG00000000867	Vars	100	65.447	ENSPFOG00000015690	vars	100	65.603	Poecilia_formosa
ENSRNOG00000000867	Vars	100	65.775	ENSPLAG00000009590	vars	100	65.775	Poecilia_latipinna
ENSRNOG00000000867	Vars	100	65.447	ENSPMEG00000004708	vars	100	65.603	Poecilia_mexicana
ENSRNOG00000000867	Vars	100	63.937	ENSPREG00000013264	vars	100	63.451	Poecilia_reticulata
ENSRNOG00000000867	Vars	100	91.851	ENSPPYG00000016460	VARS	100	91.851	Pongo_abelii
ENSRNOG00000000867	Vars	86	91.562	ENSPCAG00000013565	VARS	86	91.562	Procavia_capensis
ENSRNOG00000000867	Vars	100	93.123	ENSPCOG00000010942	VARS	100	93.439	Propithecus_coquereli
ENSRNOG00000000867	Vars	100	89.557	ENSPVAG00000012403	VARS	100	89.557	Pteropus_vampyrus
ENSRNOG00000000867	Vars	100	64.396	ENSPNYG00000022511	vars	100	64.569	Pundamilia_nyererei
ENSRNOG00000000867	Vars	100	64.856	ENSPNAG00000020962	vars	100	64.756	Pygocentrus_nattereri
ENSRNOG00000000867	Vars	100	93.434	ENSRBIG00000041669	VARS	100	93.434	Rhinopithecus_bieti
ENSRNOG00000000867	Vars	100	93.434	ENSRROG00000045490	VARS	100	93.434	Rhinopithecus_roxellana
ENSRNOG00000000867	Vars	100	93.117	ENSSBOG00000035402	VARS	100	93.117	Saimiri_boliviensis_boliviensis
ENSRNOG00000000867	Vars	100	81.098	ENSSHAG00000006937	VARS	100	81.333	Sarcophilus_harrisii
ENSRNOG00000000867	Vars	100	64.942	ENSSFOG00015014272	vars	100	65.019	Scleropages_formosus
ENSRNOG00000000867	Vars	100	63.854	ENSSMAG00000009596	vars	99	63.848	Scophthalmus_maximus
ENSRNOG00000000867	Vars	100	64.142	ENSSDUG00000014177	vars	100	64.236	Seriola_dumerili
ENSRNOG00000000867	Vars	100	64.142	ENSSLDG00000025316	vars	100	64.236	Seriola_lalandi_dorsalis
ENSRNOG00000000867	Vars	100	64.802	ENSSPAG00000017068	vars	100	64.875	Stegastes_partitus
ENSRNOG00000000867	Vars	100	92.411	ENSSSCG00000038950	VARS	100	92.727	Sus_scrofa
ENSRNOG00000000867	Vars	82	64.142	ENSTRUG00000012307	vars	98	64.088	Takifugu_rubripes
ENSRNOG00000000867	Vars	100	64.894	ENSTNIG00000008011	vars	100	64.890	Tetraodon_nigroviridis
ENSRNOG00000000867	Vars	53	96.255	ENSTBEG00000004728	-	60	96.255	Tupaia_belangeri
ENSRNOG00000000867	Vars	100	85.047	ENSTTRG00000014128	VARS	100	85.047	Tursiops_truncatus
ENSRNOG00000000867	Vars	100	89.623	ENSUAMG00000010424	VARS	100	89.623	Ursus_americanus
ENSRNOG00000000867	Vars	93	92.698	ENSUMAG00000013486	VARS	98	92.222	Ursus_maritimus
ENSRNOG00000000867	Vars	100	92.806	ENSVVUG00000021323	VARS	100	92.569	Vulpes_vulpes
ENSRNOG00000000867	Vars	96	62.379	ENSXETG00000024076	vars	98	62.379	Xenopus_tropicalis
ENSRNOG00000000867	Vars	100	65.354	ENSXCOG00000019172	vars	100	65.512	Xiphophorus_couchianus
ENSRNOG00000000867	Vars	100	65.214	ENSXMAG00000010927	vars	100	65.370	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0004832	valine-tRNA ligase activity	21873635.	IBA	Function
GO:0004832	valine-tRNA ligase activity	8428657.	IDA	Function
GO:0004832	valine-tRNA ligase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006438	valyl-tRNA aminoacylation	21873635.	IBA	Process
GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity	-	IEA	Process