EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000888 (Gene tree)
Gene ID: 288615
Gene Symbol: Sbds
Alias: LOC288615|MGC105922
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 9158 bases
Position: chr12:29921443-29930600
Accession: 1311043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001190	SBDS	PF01172.18	3.6e-33	1	1
ENSRNOP00000001190	SBDS_C	PF09377.10	7.5e-39	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001190	-	1394	-	ENSRNOP00000001190	250 (aa)	-	Q5RK30

Gene Model

Click here to download ENSRNOG00000000888's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000888	Sbds	100	97.200	ENSG00000126524	SBDS	100	97.200	Homo_sapiens
ENSRNOG00000000888	Sbds	99	84.337	ENSAPOG00000014285	sbds	100	84.337	Acanthochromis_polyacanthus
ENSRNOG00000000888	Sbds	100	97.600	ENSAMEG00000018167	SBDS	100	97.600	Ailuropoda_melanoleuca
ENSRNOG00000000888	Sbds	99	84.127	ENSACIG00000007308	sbds	100	84.127	Amphilophus_citrinellus
ENSRNOG00000000888	Sbds	99	84.337	ENSAOCG00000016770	sbds	100	84.337	Amphiprion_ocellaris
ENSRNOG00000000888	Sbds	99	84.739	ENSAPEG00000015897	sbds	100	84.739	Amphiprion_percula
ENSRNOG00000000888	Sbds	99	84.739	ENSATEG00000006901	sbds	100	84.739	Anabas_testudineus
ENSRNOG00000000888	Sbds	92	90.043	ENSANAG00000024342	-	97	90.043	Aotus_nancymaae
ENSRNOG00000000888	Sbds	83	96.618	ENSANAG00000037501	-	100	96.618	Aotus_nancymaae
ENSRNOG00000000888	Sbds	99	85.542	ENSACLG00000018750	sbds	100	85.542	Astatotilapia_calliptera
ENSRNOG00000000888	Sbds	100	85.600	ENSAMXG00000005361	sbds	100	85.600	Astyanax_mexicanus
ENSRNOG00000000888	Sbds	100	97.600	ENSBTAG00000004051	SBDS	100	97.600	Bos_taurus
ENSRNOG00000000888	Sbds	98	58.130	WBGene00021063	sbds-1	97	58.130	Caenorhabditis_elegans
ENSRNOG00000000888	Sbds	100	96.800	ENSCJAG00000041007	SBDS	100	96.800	Callithrix_jacchus
ENSRNOG00000000888	Sbds	100	94.841	ENSCAFG00000010797	SBDS	100	94.841	Canis_familiaris
ENSRNOG00000000888	Sbds	100	97.200	ENSCAFG00020005357	SBDS	100	97.200	Canis_lupus_dingo
ENSRNOG00000000888	Sbds	100	97.600	ENSCHIG00000026854	SBDS	100	97.600	Capra_hircus
ENSRNOG00000000888	Sbds	100	97.200	ENSTSYG00000033822	SBDS	100	97.200	Carlito_syrichta
ENSRNOG00000000888	Sbds	66	97.561	ENSCAPG00000006634	SBDS	100	97.561	Cavia_aperea
ENSRNOG00000000888	Sbds	100	98.000	ENSCPOG00000036143	SBDS	100	98.000	Cavia_porcellus
ENSRNOG00000000888	Sbds	100	96.800	ENSCCAG00000020671	SBDS	100	96.800	Cebus_capucinus
ENSRNOG00000000888	Sbds	100	97.200	ENSCATG00000039026	SBDS	100	97.200	Cercocebus_atys
ENSRNOG00000000888	Sbds	100	97.600	ENSCLAG00000005721	-	100	97.600	Chinchilla_lanigera
ENSRNOG00000000888	Sbds	99	70.968	ENSCLAG00000002113	-	99	70.968	Chinchilla_lanigera
ENSRNOG00000000888	Sbds	100	97.200	ENSCSAG00000018275	SBDS	100	97.200	Chlorocebus_sabaeus
ENSRNOG00000000888	Sbds	100	92.800	ENSCHOG00000003795	SBDS	100	92.800	Choloepus_hoffmanni
ENSRNOG00000000888	Sbds	100	88.800	ENSCPBG00000014893	SBDS	100	88.800	Chrysemys_picta_bellii
ENSRNOG00000000888	Sbds	99	67.200	ENSCSAVG00000011811	-	100	67.200	Ciona_savignyi
ENSRNOG00000000888	Sbds	100	96.800	ENSCANG00000032368	SBDS	100	96.800	Colobus_angolensis_palliatus
ENSRNOG00000000888	Sbds	66	97.561	ENSCGRG00001019886	Sbds	100	97.561	Cricetulus_griseus_chok1gshd
ENSRNOG00000000888	Sbds	83	98.068	ENSCGRG00000009211	Sbds	100	98.068	Cricetulus_griseus_crigri
ENSRNOG00000000888	Sbds	99	82.731	ENSCSEG00000005798	sbds	100	82.731	Cynoglossus_semilaevis
ENSRNOG00000000888	Sbds	99	83.133	ENSCVAG00000001053	sbds	100	83.133	Cyprinodon_variegatus
ENSRNOG00000000888	Sbds	100	84.800	ENSDARG00000027803	sbds	100	84.800	Danio_rerio
ENSRNOG00000000888	Sbds	100	96.800	ENSDNOG00000041174	SBDS	100	96.800	Dasypus_novemcinctus
ENSRNOG00000000888	Sbds	100	98.000	ENSDORG00000026218	Sbds	100	98.000	Dipodomys_ordii
ENSRNOG00000000888	Sbds	90	59.649	FBgn0035714	CG8549	99	59.839	Drosophila_melanogaster
ENSRNOG00000000888	Sbds	93	59.227	ENSEBUG00000015780	sbds	100	59.227	Eptatretus_burgeri
ENSRNOG00000000888	Sbds	100	97.600	ENSEASG00005008821	SBDS	100	97.600	Equus_asinus_asinus
ENSRNOG00000000888	Sbds	100	97.600	ENSECAG00000008202	SBDS	100	97.600	Equus_caballus
ENSRNOG00000000888	Sbds	83	74.519	ENSEEUG00000004768	SBDS	100	74.519	Erinaceus_europaeus
ENSRNOG00000000888	Sbds	100	82.800	ENSELUG00000008382	sbds	100	82.800	Esox_lucius
ENSRNOG00000000888	Sbds	100	98.000	ENSFCAG00000022142	SBDS	100	98.000	Felis_catus
ENSRNOG00000000888	Sbds	100	88.800	ENSFALG00000013808	SBDS	100	88.800	Ficedula_albicollis
ENSRNOG00000000888	Sbds	100	98.000	ENSFDAG00000018947	-	100	98.000	Fukomys_damarensis
ENSRNOG00000000888	Sbds	99	79.920	ENSFHEG00000000708	sbds	100	79.920	Fundulus_heteroclitus
ENSRNOG00000000888	Sbds	100	84.400	ENSGMOG00000018356	sbds	99	84.400	Gadus_morhua
ENSRNOG00000000888	Sbds	100	88.400	ENSGALG00000027989	SBDS	100	88.400	Gallus_gallus
ENSRNOG00000000888	Sbds	92	80.000	ENSGAFG00000014204	sbds	100	80.000	Gambusia_affinis
ENSRNOG00000000888	Sbds	99	83.534	ENSGACG00000012697	sbds	100	83.534	Gasterosteus_aculeatus
ENSRNOG00000000888	Sbds	86	89.252	ENSGAGG00000022402	SBDS	100	89.252	Gopherus_agassizii
ENSRNOG00000000888	Sbds	96	76.763	ENSGGOG00000040023	-	92	76.763	Gorilla_gorilla
ENSRNOG00000000888	Sbds	99	85.542	ENSHBUG00000002660	sbds	100	85.542	Haplochromis_burtoni
ENSRNOG00000000888	Sbds	100	96.400	ENSHGLG00000009671	SBDS	100	96.400	Heterocephalus_glaber_female
ENSRNOG00000000888	Sbds	100	96.400	ENSHGLG00100011332	SBDS	100	96.400	Heterocephalus_glaber_male
ENSRNOG00000000888	Sbds	99	81.526	ENSHCOG00000018606	sbds	100	81.526	Hippocampus_comes
ENSRNOG00000000888	Sbds	100	86.000	ENSIPUG00000006536	sbds	100	86.000	Ictalurus_punctatus
ENSRNOG00000000888	Sbds	100	69.565	ENSJJAG00000003934	-	100	69.565	Jaculus_jaculus
ENSRNOG00000000888	Sbds	100	94.000	ENSJJAG00000012033	-	100	94.000	Jaculus_jaculus
ENSRNOG00000000888	Sbds	99	83.936	ENSKMAG00000018542	sbds	100	83.936	Kryptolebias_marmoratus
ENSRNOG00000000888	Sbds	99	82.329	ENSLBEG00000016687	sbds	100	82.329	Labrus_bergylta
ENSRNOG00000000888	Sbds	100	70.472	ENSLACG00000018916	SBDS	100	70.472	Latimeria_chalumnae
ENSRNOG00000000888	Sbds	100	87.200	ENSLOCG00000004073	sbds	100	87.200	Lepisosteus_oculatus
ENSRNOG00000000888	Sbds	100	96.400	ENSLAFG00000008763	SBDS	100	96.400	Loxodonta_africana
ENSRNOG00000000888	Sbds	100	97.200	ENSMFAG00000032620	SBDS	100	97.200	Macaca_fascicularis
ENSRNOG00000000888	Sbds	100	97.200	ENSMMUG00000045653	SBDS	100	97.200	Macaca_mulatta
ENSRNOG00000000888	Sbds	100	97.200	ENSMNEG00000031523	SBDS	100	97.200	Macaca_nemestrina
ENSRNOG00000000888	Sbds	100	74.409	ENSMLEG00000036826	SBDS	100	74.409	Mandrillus_leucophaeus
ENSRNOG00000000888	Sbds	99	84.337	ENSMAMG00000016062	sbds	100	84.337	Mastacembelus_armatus
ENSRNOG00000000888	Sbds	99	85.542	ENSMZEG00005024385	sbds	100	85.542	Maylandia_zebra
ENSRNOG00000000888	Sbds	100	88.400	ENSMGAG00000002119	SBDS	100	88.400	Meleagris_gallopavo
ENSRNOG00000000888	Sbds	99	77.912	ENSMAUG00000022214	-	100	77.912	Mesocricetus_auratus
ENSRNOG00000000888	Sbds	100	97.600	ENSMICG00000014366	SBDS	100	97.600	Microcebus_murinus
ENSRNOG00000000888	Sbds	100	98.800	ENSMOCG00000011739	Sbds	100	98.800	Microtus_ochrogaster
ENSRNOG00000000888	Sbds	99	74.000	ENSMMOG00000005061	sbds	100	74.000	Mola_mola
ENSRNOG00000000888	Sbds	100	95.600	ENSMODG00000006644	SBDS	100	95.600	Monodelphis_domestica
ENSRNOG00000000888	Sbds	99	84.337	ENSMALG00000010219	sbds	100	84.337	Monopterus_albus
ENSRNOG00000000888	Sbds	100	99.600	MGP_CAROLIEiJ_G0027800	Sbds	100	100.000	Mus_caroli
ENSRNOG00000000888	Sbds	100	99.200	ENSMUSG00000025337	Sbds	100	100.000	Mus_musculus
ENSRNOG00000000888	Sbds	100	99.200	MGP_PahariEiJ_G0024384	Sbds	100	100.000	Mus_pahari
ENSRNOG00000000888	Sbds	100	99.200	MGP_SPRETEiJ_G0028798	Sbds	100	100.000	Mus_spretus
ENSRNOG00000000888	Sbds	67	94.048	ENSMPUG00000016192	SBDS	97	94.048	Mustela_putorius_furo
ENSRNOG00000000888	Sbds	73	94.505	ENSMLUG00000013575	SBDS	100	94.505	Myotis_lucifugus
ENSRNOG00000000888	Sbds	100	98.800	ENSNGAG00000012093	Sbds	100	98.800	Nannospalax_galili
ENSRNOG00000000888	Sbds	99	85.542	ENSNBRG00000017027	sbds	100	85.542	Neolamprologus_brichardi
ENSRNOG00000000888	Sbds	100	97.200	ENSNLEG00000013288	SBDS	100	97.200	Nomascus_leucogenys
ENSRNOG00000000888	Sbds	100	95.600	ENSOPRG00000008721	SBDS	100	95.600	Ochotona_princeps
ENSRNOG00000000888	Sbds	99	72.691	ENSODEG00000000137	-	85	76.000	Octodon_degus
ENSRNOG00000000888	Sbds	99	76.707	ENSODEG00000001116	-	99	76.707	Octodon_degus
ENSRNOG00000000888	Sbds	100	87.600	ENSODEG00000019253	-	84	87.600	Octodon_degus
ENSRNOG00000000888	Sbds	99	84.739	ENSONIG00000005874	sbds	100	84.739	Oreochromis_niloticus
ENSRNOG00000000888	Sbds	83	90.821	ENSOANG00000007674	-	100	90.821	Ornithorhynchus_anatinus
ENSRNOG00000000888	Sbds	100	96.800	ENSOCUG00000003170	SBDS	100	96.800	Oryctolagus_cuniculus
ENSRNOG00000000888	Sbds	99	81.928	ENSORLG00000023489	sbds	100	81.928	Oryzias_latipes
ENSRNOG00000000888	Sbds	99	81.526	ENSORLG00020019282	sbds	100	81.526	Oryzias_latipes_hni
ENSRNOG00000000888	Sbds	99	81.526	ENSORLG00015008005	sbds	100	81.526	Oryzias_latipes_hsok
ENSRNOG00000000888	Sbds	99	82.329	ENSOMEG00000022747	sbds	100	82.329	Oryzias_melastigma
ENSRNOG00000000888	Sbds	100	98.000	ENSOGAG00000009011	-	100	98.000	Otolemur_garnettii
ENSRNOG00000000888	Sbds	100	81.600	ENSOGAG00000015036	-	100	81.600	Otolemur_garnettii
ENSRNOG00000000888	Sbds	100	97.600	ENSOARG00000010609	SBDS	100	97.600	Ovis_aries
ENSRNOG00000000888	Sbds	100	96.400	ENSPPAG00000043889	-	100	96.400	Pan_paniscus
ENSRNOG00000000888	Sbds	100	98.000	ENSPPRG00000002307	SBDS	100	98.000	Panthera_pardus
ENSRNOG00000000888	Sbds	100	98.000	ENSPTIG00000021308	SBDS	100	98.000	Panthera_tigris_altaica
ENSRNOG00000000888	Sbds	100	82.000	ENSPTRG00000047744	-	100	82.000	Pan_troglodytes
ENSRNOG00000000888	Sbds	100	97.200	ENSPTRG00000019254	SBDS	100	97.200	Pan_troglodytes
ENSRNOG00000000888	Sbds	87	94.470	ENSPTRG00000048174	-	96	94.470	Pan_troglodytes
ENSRNOG00000000888	Sbds	100	82.400	ENSPTRG00000050835	-	100	82.400	Pan_troglodytes
ENSRNOG00000000888	Sbds	100	97.600	ENSPANG00000004078	SBDS	100	97.600	Papio_anubis
ENSRNOG00000000888	Sbds	100	85.200	ENSPKIG00000006489	sbds	100	85.200	Paramormyrops_kingsleyae
ENSRNOG00000000888	Sbds	83	89.855	ENSPSIG00000014603	SBDS	99	89.855	Pelodiscus_sinensis
ENSRNOG00000000888	Sbds	99	83.133	ENSPMGG00000004246	sbds	100	83.133	Periophthalmus_magnuspinnatus
ENSRNOG00000000888	Sbds	100	98.400	ENSPEMG00000008728	Sbds	100	98.400	Peromyscus_maniculatus_bairdii
ENSRNOG00000000888	Sbds	100	95.600	ENSPCIG00000029718	SBDS	100	95.600	Phascolarctos_cinereus
ENSRNOG00000000888	Sbds	99	82.329	ENSPFOG00000015837	sbds	100	82.329	Poecilia_formosa
ENSRNOG00000000888	Sbds	99	82.329	ENSPLAG00000003641	sbds	100	82.329	Poecilia_latipinna
ENSRNOG00000000888	Sbds	99	82.329	ENSPMEG00000019483	sbds	100	82.329	Poecilia_mexicana
ENSRNOG00000000888	Sbds	99	81.928	ENSPREG00000018758	sbds	100	81.928	Poecilia_reticulata
ENSRNOG00000000888	Sbds	100	97.200	ENSPPYG00000017513	SBDS	100	97.200	Pongo_abelii
ENSRNOG00000000888	Sbds	100	97.600	ENSPCOG00000021098	SBDS	100	97.600	Propithecus_coquereli
ENSRNOG00000000888	Sbds	100	97.200	ENSPVAG00000009369	SBDS	100	97.200	Pteropus_vampyrus
ENSRNOG00000000888	Sbds	99	85.141	ENSPNYG00000022403	sbds	100	85.141	Pundamilia_nyererei
ENSRNOG00000000888	Sbds	100	86.400	ENSPNAG00000001120	sbds	100	86.400	Pygocentrus_nattereri
ENSRNOG00000000888	Sbds	100	97.200	ENSRBIG00000035557	SBDS	100	97.200	Rhinopithecus_bieti
ENSRNOG00000000888	Sbds	100	79.600	ENSRROG00000041986	-	100	77.600	Rhinopithecus_roxellana
ENSRNOG00000000888	Sbds	100	97.200	ENSRROG00000040842	-	100	97.200	Rhinopithecus_roxellana
ENSRNOG00000000888	Sbds	96	42.857	YLR022C	-	96	41.870	Saccharomyces_cerevisiae
ENSRNOG00000000888	Sbds	93	96.121	ENSSBOG00000022460	SBDS	100	96.121	Saimiri_boliviensis_boliviensis
ENSRNOG00000000888	Sbds	100	82.000	ENSSHAG00000010263	SBDS	100	82.000	Sarcophilus_harrisii
ENSRNOG00000000888	Sbds	100	86.400	ENSSFOG00015001108	sbds	100	86.400	Scleropages_formosus
ENSRNOG00000000888	Sbds	99	85.141	ENSSMAG00000020506	sbds	100	85.141	Scophthalmus_maximus
ENSRNOG00000000888	Sbds	99	83.936	ENSSDUG00000001528	sbds	100	83.936	Seriola_dumerili
ENSRNOG00000000888	Sbds	99	84.337	ENSSLDG00000003659	sbds	100	84.337	Seriola_lalandi_dorsalis
ENSRNOG00000000888	Sbds	61	98.693	ENSSARG00000013132	-	100	98.693	Sorex_araneus
ENSRNOG00000000888	Sbds	73	100.000	ENSSARG00000001899	-	73	100.000	Sorex_araneus
ENSRNOG00000000888	Sbds	100	86.400	ENSSPUG00000002699	SBDS	100	86.400	Sphenodon_punctatus
ENSRNOG00000000888	Sbds	99	84.337	ENSSPAG00000016419	sbds	100	76.800	Stegastes_partitus
ENSRNOG00000000888	Sbds	100	97.200	ENSSSCG00000007732	SBDS	100	97.200	Sus_scrofa
ENSRNOG00000000888	Sbds	66	89.091	ENSTGUG00000003426	SBDS	99	89.091	Taeniopygia_guttata
ENSRNOG00000000888	Sbds	99	84.337	ENSTRUG00000021443	sbds	100	84.337	Takifugu_rubripes
ENSRNOG00000000888	Sbds	99	83.133	ENSTNIG00000019000	sbds	100	83.133	Tetraodon_nigroviridis
ENSRNOG00000000888	Sbds	83	83.654	ENSTBEG00000001178	SBDS	100	83.654	Tupaia_belangeri
ENSRNOG00000000888	Sbds	100	77.600	ENSTTRG00000003921	SBDS	100	77.600	Tursiops_truncatus
ENSRNOG00000000888	Sbds	100	97.600	ENSUAMG00000001326	SBDS	100	97.600	Ursus_americanus
ENSRNOG00000000888	Sbds	100	97.600	ENSUMAG00000015353	SBDS	100	97.600	Ursus_maritimus
ENSRNOG00000000888	Sbds	100	97.200	ENSVVUG00000016478	SBDS	100	97.200	Vulpes_vulpes
ENSRNOG00000000888	Sbds	100	86.400	ENSXETG00000010093	sbds	100	86.400	Xenopus_tropicalis
ENSRNOG00000000888	Sbds	99	75.100	ENSXCOG00000010639	sbds	100	75.100	Xiphophorus_couchianus
ENSRNOG00000000888	Sbds	99	82.731	ENSXMAG00000006065	sbds	100	82.731	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000922	spindle pole	-	ISO	Component
GO:0000922	spindle pole	-	ISS	Component
GO:0001833	inner cell mass cell proliferation	-	IEA	Process
GO:0001833	inner cell mass cell proliferation	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006364	rRNA processing	-	ISO	Process
GO:0007052	mitotic spindle organization	-	IEA	Process
GO:0007052	mitotic spindle organization	-	ISO	Process
GO:0008017	microtubule binding	-	IEA	Function
GO:0008017	microtubule binding	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0008283	cell proliferation	-	ISO	Process
GO:0008283	cell proliferation	-	ISS	Process
GO:0019843	rRNA binding	-	IEA	Function
GO:0019843	rRNA binding	-	ISO	Function
GO:0030282	bone mineralization	-	IEA	Process
GO:0030282	bone mineralization	-	ISO	Process
GO:0030595	leukocyte chemotaxis	-	IEA	Process
GO:0030595	leukocyte chemotaxis	-	ISO	Process
GO:0042256	mature ribosome assembly	-	ISO	Process
GO:0042256	mature ribosome assembly	-	ISS	Process
GO:0043022	ribosome binding	-	ISO	Function
GO:0043022	ribosome binding	-	ISS	Function
GO:0048539	bone marrow development	-	IEA	Process
GO:0048539	bone marrow development	-	ISO	Process