EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000931 (Gene tree)
Gene ID: 304431
Gene Symbol: Sfswap
Alias: LOC304431|MGC125102|Sfrs8|Srsf8
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 70535 bases
Position: chr12:30740520-30811054
Accession: 1305004
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000076174	DRY_EERY	PF09750.9	2e-32	1	1
ENSRNOP00000070951	DRY_EERY	PF09750.9	2.3e-32	1	1
ENSRNOP00000001235	Surp	PF01805.20	3.3e-27	1	2
ENSRNOP00000001235	Surp	PF01805.20	3.3e-27	2	2
ENSRNOP00000076174	Surp	PF01805.20	4.7e-27	1	2
ENSRNOP00000076174	Surp	PF01805.20	4.7e-27	2	2
ENSRNOP00000070951	Surp	PF01805.20	5.8e-27	1	2
ENSRNOP00000070951	Surp	PF01805.20	5.8e-27	2	2
ENSRNOP00000076147	Surp	PF01805.20	7.8e-14	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000077977	-	3547	XM_006249269	ENSRNOP00000070951	996 (aa)	XP_006249331	A0A0G2JZ87
ENSRNOT00000093734	-	683	-	ENSRNOP00000076147	228 (aa)	-	A0A1W2Q666
ENSRNOT00000093652	-	744	-	-	- (aa)	-	-
ENSRNOT00000093199	-	657	-	-	- (aa)	-	-
ENSRNOT00000093391	-	698	-	-	- (aa)	-	-
ENSRNOT00000093286	-	1794	-	-	- (aa)	-	-
ENSRNOT00000001235	-	3127	XM_008769198	ENSRNOP00000001235	791 (aa)	XP_008767421	Q3KR71
ENSRNOT00000093237	-	3213	XM_006249270	ENSRNOP00000076174	917 (aa)	XP_006249332	A0A1W2Q681
ENSRNOT00000093278	-	2111	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000000931's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000931's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000931	Sfswap	100	87.039	ENSG00000061936	SFSWAP	100	87.438	Homo_sapiens
ENSRNOG00000000931	Sfswap	98	45.798	ENSAPOG00000005784	sfswap	59	68.835	Acanthochromis_polyacanthus
ENSRNOG00000000931	Sfswap	100	81.309	ENSAMEG00000013818	SFSWAP	100	82.365	Ailuropoda_melanoleuca
ENSRNOG00000000931	Sfswap	98	47.083	ENSAOCG00000016469	sfswap	59	68.835	Amphiprion_ocellaris
ENSRNOG00000000931	Sfswap	98	43.277	ENSAPEG00000004965	sfswap	89	68.835	Amphiprion_percula
ENSRNOG00000000931	Sfswap	75	81.818	ENSATEG00000021053	sfswap	56	62.899	Anabas_testudineus
ENSRNOG00000000931	Sfswap	99	74.764	ENSAPLG00000013808	SFSWAP	97	75.728	Anas_platyrhynchos
ENSRNOG00000000931	Sfswap	100	86.826	ENSANAG00000001518	SFSWAP	100	86.826	Aotus_nancymaae
ENSRNOG00000000931	Sfswap	98	43.952	ENSACLG00000020159	sfswap	91	67.778	Astatotilapia_calliptera
ENSRNOG00000000931	Sfswap	100	87.000	ENSBTAG00000000439	SFSWAP	100	87.298	Bos_taurus
ENSRNOG00000000931	Sfswap	100	86.617	ENSCJAG00000003613	SFSWAP	100	87.065	Callithrix_jacchus
ENSRNOG00000000931	Sfswap	100	84.249	ENSCAFG00000006625	SFSWAP	100	83.932	Canis_familiaris
ENSRNOG00000000931	Sfswap	100	82.048	ENSCAFG00020011254	SFSWAP	100	82.048	Canis_lupus_dingo
ENSRNOG00000000931	Sfswap	100	86.900	ENSCHIG00000008838	SFSWAP	100	87.000	Capra_hircus
ENSRNOG00000000931	Sfswap	100	86.800	ENSTSYG00000010303	SFSWAP	100	87.500	Carlito_syrichta
ENSRNOG00000000931	Sfswap	99	83.109	ENSCAPG00000004394	SFSWAP	96	86.203	Cavia_aperea
ENSRNOG00000000931	Sfswap	100	86.713	ENSCPOG00000005280	SFSWAP	100	87.512	Cavia_porcellus
ENSRNOG00000000931	Sfswap	100	86.713	ENSCCAG00000037255	SFSWAP	100	86.214	Cebus_capucinus
ENSRNOG00000000931	Sfswap	100	88.100	ENSCATG00000031094	SFSWAP	100	88.200	Cercocebus_atys
ENSRNOG00000000931	Sfswap	100	87.975	ENSCLAG00000008380	SFSWAP	100	87.553	Chinchilla_lanigera
ENSRNOG00000000931	Sfswap	100	87.025	ENSCSAG00000001884	SFSWAP	100	86.709	Chlorocebus_sabaeus
ENSRNOG00000000931	Sfswap	99	71.551	ENSCHOG00000003578	SFSWAP	93	85.327	Choloepus_hoffmanni
ENSRNOG00000000931	Sfswap	100	88.100	ENSCANG00000036501	SFSWAP	100	88.200	Colobus_angolensis_palliatus
ENSRNOG00000000931	Sfswap	100	96.787	ENSCGRG00001011284	Sfswap	100	96.787	Cricetulus_griseus_chok1gshd
ENSRNOG00000000931	Sfswap	99	96.903	ENSCGRG00000017417	Sfswap	100	93.651	Cricetulus_griseus_crigri
ENSRNOG00000000931	Sfswap	98	44.444	ENSCVAG00000001205	-	72	50.758	Cyprinodon_variegatus
ENSRNOG00000000931	Sfswap	100	85.200	ENSDNOG00000018742	SFSWAP	99	85.500	Dasypus_novemcinctus
ENSRNOG00000000931	Sfswap	99	83.117	ENSDORG00000010352	Sfswap	99	79.652	Dipodomys_ordii
ENSRNOG00000000931	Sfswap	52	43.893	FBgn0003638	su(w[a])	56	55.556	Drosophila_melanogaster
ENSRNOG00000000931	Sfswap	92	81.517	ENSETEG00000016657	-	86	91.262	Echinops_telfairi
ENSRNOG00000000931	Sfswap	99	36.481	ENSEBUG00000016748	SFSWAP	93	43.377	Eptatretus_burgeri
ENSRNOG00000000931	Sfswap	100	86.700	ENSEASG00005016502	SFSWAP	100	87.100	Equus_asinus_asinus
ENSRNOG00000000931	Sfswap	100	86.600	ENSECAG00000007657	SFSWAP	100	87.000	Equus_caballus
ENSRNOG00000000931	Sfswap	99	71.848	ENSEEUG00000001713	SFSWAP	100	71.603	Erinaceus_europaeus
ENSRNOG00000000931	Sfswap	100	52.657	ENSELUG00000010942	sfswap	99	63.990	Esox_lucius
ENSRNOG00000000931	Sfswap	100	84.688	ENSFCAG00000010778	SFSWAP	100	84.688	Felis_catus
ENSRNOG00000000931	Sfswap	100	73.593	ENSFALG00000009577	SFSWAP	96	75.270	Ficedula_albicollis
ENSRNOG00000000931	Sfswap	100	87.290	ENSFDAG00000017235	SFSWAP	100	86.975	Fukomys_damarensis
ENSRNOG00000000931	Sfswap	51	69.435	ENSGMOG00000009205	sfswap	76	70.199	Gadus_morhua
ENSRNOG00000000931	Sfswap	99	74.396	ENSGALG00000002487	SFSWAP	100	74.583	Gallus_gallus
ENSRNOG00000000931	Sfswap	98	52.787	ENSGAFG00000006272	sfswap	89	67.480	Gambusia_affinis
ENSRNOG00000000931	Sfswap	77	72.549	ENSGACG00000017647	sfswap	92	63.807	Gasterosteus_aculeatus
ENSRNOG00000000931	Sfswap	100	73.653	ENSGAGG00000002611	SFSWAP	98	75.025	Gopherus_agassizii
ENSRNOG00000000931	Sfswap	100	87.238	ENSGGOG00000014877	SFSWAP	100	87.637	Gorilla_gorilla
ENSRNOG00000000931	Sfswap	98	43.952	ENSHBUG00000005629	sfswap	54	67.655	Haplochromis_burtoni
ENSRNOG00000000931	Sfswap	100	87.658	ENSHGLG00000019216	SFSWAP	100	87.869	Heterocephalus_glaber_female
ENSRNOG00000000931	Sfswap	100	87.447	ENSHGLG00100019350	SFSWAP	100	87.658	Heterocephalus_glaber_male
ENSRNOG00000000931	Sfswap	99	46.694	ENSHCOG00000009475	sfswap	97	49.265	Hippocampus_comes
ENSRNOG00000000931	Sfswap	98	56.172	ENSIPUG00000010598	sfswap	58	66.337	Ictalurus_punctatus
ENSRNOG00000000931	Sfswap	100	87.645	ENSSTOG00000000773	SFSWAP	100	87.645	Ictidomys_tridecemlineatus
ENSRNOG00000000931	Sfswap	100	88.397	ENSJJAG00000006609	Sfswap	100	88.502	Jaculus_jaculus
ENSRNOG00000000931	Sfswap	98	43.200	ENSKMAG00000013168	sfswap	89	65.854	Kryptolebias_marmoratus
ENSRNOG00000000931	Sfswap	99	65.517	ENSLACG00000018678	SFSWAP	100	62.786	Latimeria_chalumnae
ENSRNOG00000000931	Sfswap	99	83.838	ENSLAFG00000014462	SFSWAP	100	82.991	Loxodonta_africana
ENSRNOG00000000931	Sfswap	100	88.300	ENSMFAG00000037352	SFSWAP	100	88.000	Macaca_fascicularis
ENSRNOG00000000931	Sfswap	100	87.236	ENSMMUG00000020343	SFSWAP	100	86.709	Macaca_mulatta
ENSRNOG00000000931	Sfswap	100	88.200	ENSMNEG00000041002	SFSWAP	100	87.900	Macaca_nemestrina
ENSRNOG00000000931	Sfswap	99	86.522	ENSMLEG00000035728	SFSWAP	100	85.500	Mandrillus_leucophaeus
ENSRNOG00000000931	Sfswap	98	43.952	ENSMZEG00005017834	SFSWAP	78	62.044	Maylandia_zebra
ENSRNOG00000000931	Sfswap	97	75.203	ENSMGAG00000002191	SFSWAP	97	75.483	Meleagris_gallopavo
ENSRNOG00000000931	Sfswap	100	87.487	ENSMICG00000004465	SFSWAP	100	88.288	Microcebus_murinus
ENSRNOG00000000931	Sfswap	99	95.595	ENSMOCG00000014390	Sfswap	100	93.439	Microtus_ochrogaster
ENSRNOG00000000931	Sfswap	97	73.536	ENSMODG00000015581	SFSWAP	98	78.862	Monodelphis_domestica
ENSRNOG00000000931	Sfswap	98	50.209	ENSMALG00000012603	sfswap	97	50.159	Monopterus_albus
ENSRNOG00000000931	Sfswap	99	98.678	MGP_CAROLIEiJ_G0027780	Sfswap	100	95.767	Mus_caroli
ENSRNOG00000000931	Sfswap	99	99.119	ENSMUSG00000029439	Sfswap	100	95.661	Mus_musculus
ENSRNOG00000000931	Sfswap	99	98.238	MGP_PahariEiJ_G0024360	Sfswap	100	95.148	Mus_pahari
ENSRNOG00000000931	Sfswap	99	98.678	MGP_SPRETEiJ_G0028779	Sfswap	100	95.556	Mus_spretus
ENSRNOG00000000931	Sfswap	100	83.510	ENSMPUG00000002218	SFSWAP	100	83.827	Mustela_putorius_furo
ENSRNOG00000000931	Sfswap	99	77.826	ENSMLUG00000011296	SFSWAP	100	78.754	Myotis_lucifugus
ENSRNOG00000000931	Sfswap	100	90.074	ENSNGAG00000018167	Sfswap	100	90.074	Nannospalax_galili
ENSRNOG00000000931	Sfswap	98	43.952	ENSNBRG00000020857	sfswap	54	66.567	Neolamprologus_brichardi
ENSRNOG00000000931	Sfswap	99	86.957	ENSNLEG00000008386	SFSWAP	100	85.458	Nomascus_leucogenys
ENSRNOG00000000931	Sfswap	74	86.594	ENSMEUG00000009556	-	76	86.594	Notamacropus_eugenii
ENSRNOG00000000931	Sfswap	95	89.125	ENSOPRG00000006983	-	99	87.770	Ochotona_princeps
ENSRNOG00000000931	Sfswap	100	87.131	ENSODEG00000008020	SFSWAP	100	87.342	Octodon_degus
ENSRNOG00000000931	Sfswap	99	52.632	ENSONIG00000003757	sfswap	94	65.963	Oreochromis_niloticus
ENSRNOG00000000931	Sfswap	99	75.546	ENSOANG00000013861	SFSWAP	100	81.072	Ornithorhynchus_anatinus
ENSRNOG00000000931	Sfswap	100	77.843	ENSOCUG00000002165	SFSWAP	100	82.438	Oryctolagus_cuniculus
ENSRNOG00000000931	Sfswap	98	47.561	ENSORLG00020010779	sfswap	88	66.667	Oryzias_latipes_hni
ENSRNOG00000000931	Sfswap	98	48.536	ENSOMEG00000022065	sfswap	89	67.568	Oryzias_melastigma
ENSRNOG00000000931	Sfswap	99	82.096	ENSOGAG00000016724	SFSWAP	95	87.671	Otolemur_garnettii
ENSRNOG00000000931	Sfswap	100	86.128	ENSOARG00000014314	SFSWAP	100	86.228	Ovis_aries
ENSRNOG00000000931	Sfswap	100	87.039	ENSPPAG00000036706	SFSWAP	100	87.438	Pan_paniscus
ENSRNOG00000000931	Sfswap	100	80.238	ENSPPRG00000017318	SFSWAP	54	70.896	Panthera_pardus
ENSRNOG00000000931	Sfswap	98	72.669	ENSPTIG00000004304	SFSWAP	97	86.466	Panthera_tigris_altaica
ENSRNOG00000000931	Sfswap	100	86.839	ENSPTRG00000005640	SFSWAP	100	88.169	Pan_troglodytes
ENSRNOG00000000931	Sfswap	100	88.000	ENSPANG00000019737	SFSWAP	100	88.100	Papio_anubis
ENSRNOG00000000931	Sfswap	95	70.721	ENSPSIG00000017807	SFSWAP	100	74.448	Pelodiscus_sinensis
ENSRNOG00000000931	Sfswap	99	96.930	ENSPEMG00000001237	Sfswap	100	92.918	Peromyscus_maniculatus_bairdii
ENSRNOG00000000931	Sfswap	50	57.792	ENSPMAG00000008279	sfswap	77	62.254	Petromyzon_marinus
ENSRNOG00000000931	Sfswap	97	79.055	ENSPCIG00000006062	SFSWAP	94	79.800	Phascolarctos_cinereus
ENSRNOG00000000931	Sfswap	98	47.107	ENSPFOG00000019657	sfswap	88	67.391	Poecilia_formosa
ENSRNOG00000000931	Sfswap	98	45.868	ENSPLAG00000008513	sfswap	88	67.391	Poecilia_latipinna
ENSRNOG00000000931	Sfswap	98	45.455	ENSPREG00000006692	sfswap	53	44.483	Poecilia_reticulata
ENSRNOG00000000931	Sfswap	99	86.957	ENSPPYG00000005129	SFSWAP	100	86.066	Pongo_abelii
ENSRNOG00000000931	Sfswap	67	82.468	ENSPCAG00000004977	-	65	84.660	Procavia_capensis
ENSRNOG00000000931	Sfswap	100	86.900	ENSPCOG00000023786	SFSWAP	100	88.000	Propithecus_coquereli
ENSRNOG00000000931	Sfswap	91	87.868	ENSPVAG00000014918	SFSWAP	89	86.581	Pteropus_vampyrus
ENSRNOG00000000931	Sfswap	98	43.952	ENSPNYG00000012660	sfswap	53	67.209	Pundamilia_nyererei
ENSRNOG00000000931	Sfswap	94	90.441	ENSRBIG00000036330	SFSWAP	100	80.461	Rhinopithecus_bieti
ENSRNOG00000000931	Sfswap	100	87.487	ENSRROG00000032001	SFSWAP	100	87.588	Rhinopithecus_roxellana
ENSRNOG00000000931	Sfswap	100	85.458	ENSSBOG00000026217	SFSWAP	100	84.932	Saimiri_boliviensis_boliviensis
ENSRNOG00000000931	Sfswap	99	77.697	ENSSHAG00000014232	SFSWAP	100	80.543	Sarcophilus_harrisii
ENSRNOG00000000931	Sfswap	96	57.663	ENSSFOG00015000766	sfswap	97	56.545	Scleropages_formosus
ENSRNOG00000000931	Sfswap	98	46.311	ENSSMAG00000018718	sfswap	60	65.172	Scophthalmus_maximus
ENSRNOG00000000931	Sfswap	98	50.840	ENSSDUG00000021680	sfswap	78	66.667	Seriola_dumerili
ENSRNOG00000000931	Sfswap	98	50.420	ENSSLDG00000010835	sfswap	75	66.667	Seriola_lalandi_dorsalis
ENSRNOG00000000931	Sfswap	99	78.261	ENSSARG00000000424	SFSWAP	85	87.379	Sorex_araneus
ENSRNOG00000000931	Sfswap	100	72.924	ENSSPUG00000010272	SFSWAP	100	73.253	Sphenodon_punctatus
ENSRNOG00000000931	Sfswap	99	45.679	ENSSPAG00000014310	sfswap	55	67.647	Stegastes_partitus
ENSRNOG00000000931	Sfswap	100	85.579	ENSSSCG00000009744	SFSWAP	100	85.368	Sus_scrofa
ENSRNOG00000000931	Sfswap	99	73.665	ENSTGUG00000004623	SFSWAP	99	75.298	Taeniopygia_guttata
ENSRNOG00000000931	Sfswap	52	88.502	ENSTBEG00000004983	-	66	89.199	Tupaia_belangeri
ENSRNOG00000000931	Sfswap	100	76.341	ENSTTRG00000013478	SFSWAP	93	92.105	Tursiops_truncatus
ENSRNOG00000000931	Sfswap	100	82.154	ENSUAMG00000016807	SFSWAP	100	80.739	Ursus_americanus
ENSRNOG00000000931	Sfswap	90	76.464	ENSUMAG00000002957	SFSWAP	91	85.749	Ursus_maritimus
ENSRNOG00000000931	Sfswap	51	91.473	ENSVPAG00000010479	-	65	91.057	Vicugna_pacos
ENSRNOG00000000931	Sfswap	100	84.249	ENSVVUG00000010753	SFSWAP	100	83.932	Vulpes_vulpes
ENSRNOG00000000931	Sfswap	97	60.327	ENSXETG00000009350	sfswap	94	65.139	Xenopus_tropicalis
ENSRNOG00000000931	Sfswap	98	44.215	ENSXMAG00000009020	sfswap	89	66.938	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000380	alternative mRNA splicing, via spliceosome	-	IEA	Process
GO:0000380	alternative mRNA splicing, via spliceosome	-	ISO	Process
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0000395	mRNA 5'-splice site recognition	-	IEA	Process
GO:0000395	mRNA 5'-splice site recognition	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	15009664.	IDA	Process