EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000000985 (Gene tree)
Gene ID
304277
Gene Symbol
Cpsf4
Alias
MGC108785
Full Name
cleavage and polyadenylation specific factor 4
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
15811 bases
Position
chr12:11199898-11215708
Accession
620440
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000046991zf-CCCHPF00642.241.7e-2012
ENSRNOP00000046991zf-CCCHPF00642.241.7e-2022
ENSRNOP00000068209zf-CCCHPF00642.241.3e-1512
ENSRNOP00000068209zf-CCCHPF00642.241.3e-1522
ENSRNOP00000068209zf-CCHCPF00098.233.1e-0611
ENSRNOP00000046991zf-CCHCPF00098.233.7e-0611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000076369-1364-ENSRNOP00000068209211 (aa)-A0A096MJP3
ENSRNOT00000042474-1658XM_002727934ENSRNOP00000046991243 (aa)XP_002727980Q5FVR7
Gene Model
Click here to download ENSRNOG00000000985's gene model file
Pathways
Pathway IDPathway NameSource
rno03015mRNA surveillance pathwayKEGG
rno05164Influenza AKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000985's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000000985Cpsf410099.052ENSG00000160917CPSF4100100.000Homo_sapiens
ENSRNOG00000000985Cpsf46470.056ENSAPOG00000004921cpsf410070.056Acanthochromis_polyacanthus
ENSRNOG00000000985Cpsf410090.335ENSAMEG00000006252CPSF410090.335Ailuropoda_melanoleuca
ENSRNOG00000000985Cpsf410087.243ENSACIG00000009248cpsf410087.243Amphilophus_citrinellus
ENSRNOG00000000985Cpsf410081.887ENSAOCG00000019616cpsf410081.887Amphiprion_ocellaris
ENSRNOG00000000985Cpsf410081.887ENSAPEG00000011679cpsf410081.887Amphiprion_percula
ENSRNOG00000000985Cpsf410084.800ENSATEG00000007010cpsf410085.425Anabas_testudineus
ENSRNOG00000000985Cpsf410082.900ENSACAG00000012941CPSF48982.156Anolis_carolinensis
ENSRNOG00000000985Cpsf410099.052ENSANAG00000021360CPSF410099.052Aotus_nancymaae
ENSRNOG00000000985Cpsf410080.658ENSACLG00000010374cpsf410079.623Astatotilapia_calliptera
ENSRNOG00000000985Cpsf410085.782ENSAMXG00000031647cpsf410086.256Astyanax_mexicanus
ENSRNOG00000000985Cpsf410099.177ENSBTAG00000002090CPSF410099.177Bos_taurus
ENSRNOG00000000985Cpsf410099.052ENSCJAG00000015826CPSF410099.052Callithrix_jacchus
ENSRNOG00000000985Cpsf410099.057ENSCAFG00000015036CPSF410099.057Canis_familiaris
ENSRNOG00000000985Cpsf410091.469ENSCAFG00020014462CPSF410091.469Canis_lupus_dingo
ENSRNOG00000000985Cpsf410099.052ENSCHIG00000014313CPSF410099.052Capra_hircus
ENSRNOG00000000985Cpsf410099.052ENSTSYG00000005712-10099.052Carlito_syrichta
ENSRNOG00000000985Cpsf48892.130ENSTSYG00000008195-9991.556Carlito_syrichta
ENSRNOG00000000985Cpsf410090.204ENSTSYG00000014604-10090.204Carlito_syrichta
ENSRNOG00000000985Cpsf476100.000ENSCAPG00000013881CPSF482100.000Cavia_aperea
ENSRNOG00000000985Cpsf4100100.000ENSCPOG00000001783CPSF4100100.000Cavia_porcellus
ENSRNOG00000000985Cpsf410099.052ENSCCAG00000028291CPSF410099.052Cebus_capucinus
ENSRNOG00000000985Cpsf410099.052ENSCATG00000038440CPSF410099.052Cercocebus_atys
ENSRNOG00000000985Cpsf410099.526ENSCLAG00000007050CPSF410099.526Chinchilla_lanigera
ENSRNOG00000000985Cpsf410089.591ENSCSAG00000017795CPSF410089.591Chlorocebus_sabaeus
ENSRNOG00000000985Cpsf47881.481ENSCPBG00000020869CPSF410080.556Chrysemys_picta_bellii
ENSRNOG00000000985Cpsf46880.723ENSCPBG00000010269-10080.723Chrysemys_picta_bellii
ENSRNOG00000000985Cpsf49655.906ENSCING00000021080-9755.906Ciona_intestinalis
ENSRNOG00000000985Cpsf49652.632ENSCSAVG00000011469-9751.246Ciona_savignyi
ENSRNOG00000000985Cpsf410099.052ENSCANG00000019384CPSF410099.052Colobus_angolensis_palliatus
ENSRNOG00000000985Cpsf4100100.000ENSCGRG00001024184Cpsf4100100.000Cricetulus_griseus_chok1gshd
ENSRNOG00000000985Cpsf4100100.000ENSCGRG00000013892Cpsf4100100.000Cricetulus_griseus_crigri
ENSRNOG00000000985Cpsf410084.834ENSCSEG00000019055cpsf410084.834Cynoglossus_semilaevis
ENSRNOG00000000985Cpsf410080.000ENSCVAG00000016528cpsf410080.000Cyprinodon_variegatus
ENSRNOG00000000985Cpsf410078.967ENSDARG00000020217cpsf410079.336Danio_rerio
ENSRNOG00000000985Cpsf410089.963ENSDNOG00000006344CPSF410089.963Dasypus_novemcinctus
ENSRNOG00000000985Cpsf47987.558ENSDORG00000000742Cpsf410087.558Dipodomys_ordii
ENSRNOG00000000985Cpsf410052.740FBgn0015621Clp9953.082Drosophila_melanogaster
ENSRNOG00000000985Cpsf477100.000ENSETEG00000002608CPSF470100.000Echinops_telfairi
ENSRNOG00000000985Cpsf49971.429ENSEBUG00000012552cpsf49870.445Eptatretus_burgeri
ENSRNOG00000000985Cpsf410099.590ENSEASG00005002487CPSF410099.590Equus_asinus_asinus
ENSRNOG00000000985Cpsf4100100.000ENSECAG00000007525CPSF4100100.000Equus_caballus
ENSRNOG00000000985Cpsf468100.000ENSEEUG00000002158CPSF473100.000Erinaceus_europaeus
ENSRNOG00000000985Cpsf410078.309ENSELUG00000011481cpsf410078.309Esox_lucius
ENSRNOG00000000985Cpsf4100100.000ENSFCAG00000015070CPSF4100100.000Felis_catus
ENSRNOG00000000985Cpsf46856.977ENSFALG00000012906-10056.977Ficedula_albicollis
ENSRNOG00000000985Cpsf410095.062ENSFALG00000013799CPSF410095.062Ficedula_albicollis
ENSRNOG00000000985Cpsf48898.919ENSFDAG00000014092CPSF410098.919Fukomys_damarensis
ENSRNOG00000000985Cpsf410080.377ENSFHEG00000010880cpsf410080.377Fundulus_heteroclitus
ENSRNOG00000000985Cpsf410080.233ENSGMOG00000002330cpsf410080.233Gadus_morhua
ENSRNOG00000000985Cpsf410095.062ENSGALG00000004714CPSF410095.062Gallus_gallus
ENSRNOG00000000985Cpsf49933.043ENSGALG00000004441-9839.326Gallus_gallus
ENSRNOG00000000985Cpsf410079.545ENSGAFG00000010580cpsf410079.924Gambusia_affinis
ENSRNOG00000000985Cpsf410081.890ENSGACG00000007792cpsf410081.890Gasterosteus_aculeatus
ENSRNOG00000000985Cpsf47576.923ENSGAGG00000020579-9281.212Gopherus_agassizii
ENSRNOG00000000985Cpsf410084.387ENSGAGG00000021835CPSF410083.643Gopherus_agassizii
ENSRNOG00000000985Cpsf410099.052ENSGGOG00000015131CPSF410099.052Gorilla_gorilla
ENSRNOG00000000985Cpsf410079.623ENSHBUG00000013699cpsf410079.623Haplochromis_burtoni
ENSRNOG00000000985Cpsf410099.526ENSHGLG00000017150CPSF410099.526Heterocephalus_glaber_female
ENSRNOG00000000985Cpsf410071.090ENSHGLG00100017302-10068.720Heterocephalus_glaber_male
ENSRNOG00000000985Cpsf48397.159ENSHGLG00100009215-10097.159Heterocephalus_glaber_male
ENSRNOG00000000985Cpsf410079.623ENSHCOG00000004397cpsf410079.623Hippocampus_comes
ENSRNOG00000000985Cpsf410078.598ENSIPUG00000017147cpsf410079.336Ictalurus_punctatus
ENSRNOG00000000985Cpsf4100100.000ENSSTOG00000001688CPSF4100100.000Ictidomys_tridecemlineatus
ENSRNOG00000000985Cpsf410099.526ENSJJAG00000019426Cpsf410099.526Jaculus_jaculus
ENSRNOG00000000985Cpsf410079.245ENSKMAG00000015642cpsf410079.245Kryptolebias_marmoratus
ENSRNOG00000000985Cpsf410064.898ENSLACG00000018470-10063.672Latimeria_chalumnae
ENSRNOG00000000985Cpsf410082.593ENSLACG00000010938CPSF410082.593Latimeria_chalumnae
ENSRNOG00000000985Cpsf410081.413ENSLOCG00000004814cpsf410081.041Lepisosteus_oculatus
ENSRNOG00000000985Cpsf410089.963ENSLAFG00000000159CPSF410098.758Loxodonta_africana
ENSRNOG00000000985Cpsf410099.052ENSMFAG00000001462CPSF410099.052Macaca_fascicularis
ENSRNOG00000000985Cpsf410099.052ENSMMUG00000019191CPSF410099.052Macaca_mulatta
ENSRNOG00000000985Cpsf410099.052ENSMNEG00000032306CPSF410099.052Macaca_nemestrina
ENSRNOG00000000985Cpsf410099.052ENSMLEG00000034721CPSF410099.052Mandrillus_leucophaeus
ENSRNOG00000000985Cpsf410080.899ENSMAMG00000006244cpsf410080.899Mastacembelus_armatus
ENSRNOG00000000985Cpsf410079.623ENSMZEG00005007515cpsf410079.623Maylandia_zebra
ENSRNOG00000000985Cpsf48694.737ENSMGAG00000004235CPSF410094.737Meleagris_gallopavo
ENSRNOG00000000985Cpsf4100100.000ENSMAUG00000021253Cpsf4100100.000Mesocricetus_auratus
ENSRNOG00000000985Cpsf410099.052ENSMICG00000017429CPSF410099.052Microcebus_murinus
ENSRNOG00000000985Cpsf4100100.000ENSMOCG00000014901Cpsf4100100.000Microtus_ochrogaster
ENSRNOG00000000985Cpsf410084.834ENSMMOG00000001813cpsf410084.834Mola_mola
ENSRNOG00000000985Cpsf410087.732ENSMODG00000001367CPSF410087.732Monodelphis_domestica
ENSRNOG00000000985Cpsf410080.899ENSMALG00000012611cpsf410080.899Monopterus_albus
ENSRNOG00000000985Cpsf4100100.000MGP_CAROLIEiJ_G0028012Cpsf4100100.000Mus_caroli
ENSRNOG00000000985Cpsf4100100.000ENSMUSG00000029625Cpsf4100100.000Mus_musculus
ENSRNOG00000000985Cpsf4100100.000MGP_PahariEiJ_G0024581Cpsf4100100.000Mus_pahari
ENSRNOG00000000985Cpsf410099.588MGP_SPRETEiJ_G0029013Cpsf410099.588Mus_spretus
ENSRNOG00000000985Cpsf410090.335ENSMPUG00000016508CPSF410090.335Mustela_putorius_furo
ENSRNOG00000000985Cpsf48699.043ENSMLUG00000010980CPSF410099.043Myotis_lucifugus
ENSRNOG00000000985Cpsf410099.526ENSNGAG00000001567Cpsf410099.526Nannospalax_galili
ENSRNOG00000000985Cpsf49078.838ENSNBRG00000003943cpsf49878.838Neolamprologus_brichardi
ENSRNOG00000000985Cpsf410099.052ENSNLEG00000011074CPSF410099.052Nomascus_leucogenys
ENSRNOG00000000985Cpsf410087.732ENSMEUG00000006955CPSF410087.732Notamacropus_eugenii
ENSRNOG00000000985Cpsf410089.591ENSOPRG00000013663CPSF410089.591Ochotona_princeps
ENSRNOG00000000985Cpsf410073.180ENSODEG00000009779-10073.180Octodon_degus
ENSRNOG00000000985Cpsf4100100.000ENSODEG00000011181-100100.000Octodon_degus
ENSRNOG00000000985Cpsf49884.167ENSODEG00000018283-9184.167Octodon_degus
ENSRNOG00000000985Cpsf410079.623ENSONIG00000008495cpsf410079.623Oreochromis_niloticus
ENSRNOG00000000985Cpsf48685.470ENSOANG00000007729CPSF410082.906Ornithorhynchus_anatinus
ENSRNOG00000000985Cpsf410053.957ENSOANG00000009568-10052.158Ornithorhynchus_anatinus
ENSRNOG00000000985Cpsf410089.591ENSOCUG00000002437CPSF47089.591Oryctolagus_cuniculus
ENSRNOG00000000985Cpsf410080.000ENSORLG00000022798cpsf410081.132Oryzias_latipes
ENSRNOG00000000985Cpsf410080.000ENSORLG00020008548cpsf410081.132Oryzias_latipes_hni
ENSRNOG00000000985Cpsf410079.623ENSORLG00015019575cpsf410080.755Oryzias_latipes_hsok
ENSRNOG00000000985Cpsf410083.886ENSOMEG00000005176cpsf410083.886Oryzias_melastigma
ENSRNOG00000000985Cpsf410089.963ENSOGAG00000010884CPSF410089.963Otolemur_garnettii
ENSRNOG00000000985Cpsf410078.022ENSOARG00000018668CPSF410076.923Ovis_aries
ENSRNOG00000000985Cpsf410098.578ENSPPAG00000043355CPSF410098.578Pan_paniscus
ENSRNOG00000000985Cpsf4100100.000ENSPPRG00000003134CPSF4100100.000Panthera_pardus
ENSRNOG00000000985Cpsf48799.457ENSPTIG00000005604CPSF48799.457Panthera_tigris_altaica
ENSRNOG00000000985Cpsf410098.578ENSPTRG00000019453CPSF410098.578Pan_troglodytes
ENSRNOG00000000985Cpsf410099.052ENSPANG00000023123CPSF410099.052Papio_anubis
ENSRNOG00000000985Cpsf410079.927ENSPKIG00000014278cpsf410079.927Paramormyrops_kingsleyae
ENSRNOG00000000985Cpsf47966.321ENSPSIG00000018198-10066.321Pelodiscus_sinensis
ENSRNOG00000000985Cpsf47881.019ENSPSIG00000011229CPSF410080.093Pelodiscus_sinensis
ENSRNOG00000000985Cpsf410081.481ENSPMGG00000017735cpsf410077.959Periophthalmus_magnuspinnatus
ENSRNOG00000000985Cpsf4100100.000ENSPEMG00000004508Cpsf4100100.000Peromyscus_maniculatus_bairdii
ENSRNOG00000000985Cpsf410087.732ENSPCIG00000024776CPSF410087.732Phascolarctos_cinereus
ENSRNOG00000000985Cpsf410079.545ENSPFOG00000014912cpsf410079.924Poecilia_formosa
ENSRNOG00000000985Cpsf410078.862ENSPLAG00000009599cpsf410078.862Poecilia_latipinna
ENSRNOG00000000985Cpsf410079.545ENSPMEG00000009790cpsf410079.924Poecilia_mexicana
ENSRNOG00000000985Cpsf410078.788ENSPREG00000018166cpsf410075.954Poecilia_reticulata
ENSRNOG00000000985Cpsf48687.179ENSPPYG00000017378CPSF410087.179Pongo_abelii
ENSRNOG00000000985Cpsf410089.219ENSPCAG00000001892CPSF410089.219Procavia_capensis
ENSRNOG00000000985Cpsf410099.526ENSPCOG00000012771CPSF410099.526Propithecus_coquereli
ENSRNOG00000000985Cpsf410083.643ENSPVAG00000007531CPSF410083.643Pteropus_vampyrus
ENSRNOG00000000985Cpsf410079.623ENSPNYG00000018559cpsf410079.623Pundamilia_nyererei
ENSRNOG00000000985Cpsf410081.111ENSPNAG00000003736cpsf410081.481Pygocentrus_nattereri
ENSRNOG00000000985Cpsf48398.864ENSRBIG00000033886CPSF410098.864Rhinopithecus_bieti
ENSRNOG00000000985Cpsf410099.052ENSRROG00000040431CPSF410099.052Rhinopithecus_roxellana
ENSRNOG00000000985Cpsf410099.052ENSSBOG00000020493CPSF410099.052Saimiri_boliviensis_boliviensis
ENSRNOG00000000985Cpsf410087.732ENSSHAG00000011533CPSF410087.732Sarcophilus_harrisii
ENSRNOG00000000985Cpsf410081.159ENSSFOG00015007883cpsf410081.159Scleropages_formosus
ENSRNOG00000000985Cpsf410086.531ENSSMAG00000006374cpsf410086.531Scophthalmus_maximus
ENSRNOG00000000985Cpsf410081.203ENSSDUG00000018887cpsf410081.203Seriola_dumerili
ENSRNOG00000000985Cpsf410081.203ENSSLDG00000019078cpsf410081.203Seriola_lalandi_dorsalis
ENSRNOG00000000985Cpsf48688.462ENSSARG00000012416CPSF410088.462Sorex_araneus
ENSRNOG00000000985Cpsf410085.130ENSSPUG00000003549CPSF410083.271Sphenodon_punctatus
ENSRNOG00000000985Cpsf49564.831ENSSPUG00000014803-9764.407Sphenodon_punctatus
ENSRNOG00000000985Cpsf410087.654ENSSPAG00000006174cpsf410087.654Stegastes_partitus
ENSRNOG00000000985Cpsf410099.180ENSSSCG00000026896CPSF410099.180Sus_scrofa
ENSRNOG00000000985Cpsf410093.878ENSTGUG00000007552CPSF410093.878Taeniopygia_guttata
ENSRNOG00000000985Cpsf410079.468ENSTRUG00000024220cpsf410079.468Takifugu_rubripes
ENSRNOG00000000985Cpsf410079.087ENSTNIG00000006265cpsf410079.848Tetraodon_nigroviridis
ENSRNOG00000000985Cpsf48676.496ENSTBEG00000011406CPSF410075.641Tupaia_belangeri
ENSRNOG00000000985Cpsf410078.439ENSTTRG00000003007CPSF410078.439Tursiops_truncatus
ENSRNOG00000000985Cpsf491100.000ENSUAMG00000008051CPSF485100.000Ursus_americanus
ENSRNOG00000000985Cpsf4100100.000ENSUMAG00000009474CPSF4100100.000Ursus_maritimus
ENSRNOG00000000985Cpsf410099.180ENSVVUG00000008824CPSF410099.180Vulpes_vulpes
ENSRNOG00000000985Cpsf49961.278ENSXETG00000004641cpsf4l9960.150Xenopus_tropicalis
ENSRNOG00000000985Cpsf410079.570ENSXETG00000009892cpsf410081.004Xenopus_tropicalis
ENSRNOG00000000985Cpsf410084.360ENSXCOG00000016040cpsf410084.360Xiphophorus_couchianus
ENSRNOG00000000985Cpsf410079.545ENSXMAG00000024670cpsf410079.924Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0005654nucleoplasm-ISOComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21873635.IBAComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex-ISOComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex-ISSComponent
GO:0008270zinc ion binding-IEAFunction
GO:0043231intracellular membrane-bounded organelle-ISOComponent
GO:0098789pre-mRNA cleavage required for polyadenylation21873635.IBAProcess

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