EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000000987 (Gene tree)
Gene ID: 304278
Gene Symbol: Ptcd1
Alias: LOC304278
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 17748 bases
Position: chr12:11215886-11233633
Accession: 1311473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000068093	PPR	PF01535.20	1.3e-17	1	2
ENSRNOP00000068093	PPR	PF01535.20	1.3e-17	2	2
ENSRNOP00000057644	PPR	PF01535.20	1.8e-14	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000060924	-	2981	-	ENSRNOP00000057644	652 (aa)	-	D4AA10
ENSRNOT00000076896	-	2949	XM_006248871	ENSRNOP00000068093	686 (aa)	XP_006248933	A2VD13

Gene Model

Click here to download ENSRNOG00000000987's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000000987's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000000987	Ptcd1	98	73.799	ENSG00000106246	PTCD1	98	73.799	Homo_sapiens
ENSRNOG00000000987	Ptcd1	98	73.799	ENSG00000248919	ATP5MF-PTCD1	92	73.304	Homo_sapiens
ENSRNOG00000000987	Ptcd1	84	46.552	ENSAPOG00000010679	ptcd1	88	46.552	Acanthochromis_polyacanthus
ENSRNOG00000000987	Ptcd1	98	77.391	ENSAMEG00000006224	-	91	77.424	Ailuropoda_melanoleuca
ENSRNOG00000000987	Ptcd1	91	48.418	ENSACIG00000017861	ptcd1	90	48.259	Amphilophus_citrinellus
ENSRNOG00000000987	Ptcd1	84	46.299	ENSAOCG00000022617	ptcd1	85	46.299	Amphiprion_ocellaris
ENSRNOG00000000987	Ptcd1	88	47.204	ENSAOCG00000020741	-	84	47.204	Amphiprion_ocellaris
ENSRNOG00000000987	Ptcd1	88	46.885	ENSAPEG00000022632	ptcd1	85	46.365	Amphiprion_percula
ENSRNOG00000000987	Ptcd1	98	46.677	ENSATEG00000007016	ptcd1	91	46.381	Anabas_testudineus
ENSRNOG00000000987	Ptcd1	86	60.504	ENSAPLG00000006862	-	92	60.504	Anas_platyrhynchos
ENSRNOG00000000987	Ptcd1	97	54.899	ENSACAG00000012871	-	91	54.899	Anolis_carolinensis
ENSRNOG00000000987	Ptcd1	98	74.015	ENSANAG00000035790	-	99	74.015	Aotus_nancymaae
ENSRNOG00000000987	Ptcd1	92	47.476	ENSACLG00000002824	ptcd1	87	47.161	Astatotilapia_calliptera
ENSRNOG00000000987	Ptcd1	87	48.243	ENSAMXG00000037292	ptcd1	86	48.382	Astyanax_mexicanus
ENSRNOG00000000987	Ptcd1	99	73.563	ENSBTAG00000020440	-	86	73.707	Bos_taurus
ENSRNOG00000000987	Ptcd1	98	73.730	ENSCJAG00000015815	-	98	73.875	Callithrix_jacchus
ENSRNOG00000000987	Ptcd1	99	76.259	ENSCAFG00000015055	-	92	76.293	Canis_familiaris
ENSRNOG00000000987	Ptcd1	99	76.259	ENSCAFG00020014480	-	92	76.293	Canis_lupus_dingo
ENSRNOG00000000987	Ptcd1	99	73.813	ENSCHIG00000027000	-	98	73.957	Capra_hircus
ENSRNOG00000000987	Ptcd1	99	75.827	ENSTSYG00000029495	-	99	76.259	Carlito_syrichta
ENSRNOG00000000987	Ptcd1	92	76.056	ENSCAPG00000014660	-	97	75.900	Cavia_aperea
ENSRNOG00000000987	Ptcd1	99	73.894	ENSCPOG00000001780	-	99	73.752	Cavia_porcellus
ENSRNOG00000000987	Ptcd1	99	72.911	ENSCCAG00000034025	-	99	73.027	Cebus_capucinus
ENSRNOG00000000987	Ptcd1	98	75.036	ENSCATG00000040859	-	98	74.818	Cercocebus_atys
ENSRNOG00000000987	Ptcd1	98	75.109	ENSCLAG00000006354	-	99	74.535	Chinchilla_lanigera
ENSRNOG00000000987	Ptcd1	92	74.419	ENSCSAG00000017794	-	95	74.339	Chlorocebus_sabaeus
ENSRNOG00000000987	Ptcd1	88	59.688	ENSCPBG00000020866	-	83	60.841	Chrysemys_picta_bellii
ENSRNOG00000000987	Ptcd1	84	30.821	ENSCING00000007717	-	91	31.455	Ciona_intestinalis
ENSRNOG00000000987	Ptcd1	98	74.671	ENSCANG00000023441	-	97	74.449	Colobus_angolensis_palliatus
ENSRNOG00000000987	Ptcd1	99	81.688	ENSCGRG00001023686	Ptcd1	99	81.688	Cricetulus_griseus_chok1gshd
ENSRNOG00000000987	Ptcd1	99	80.939	ENSCGRG00000015031	Ptcd1	99	80.939	Cricetulus_griseus_crigri
ENSRNOG00000000987	Ptcd1	94	45.579	ENSCSEG00000002378	ptcd1	84	46.252	Cynoglossus_semilaevis
ENSRNOG00000000987	Ptcd1	89	47.727	ENSCVAG00000015826	ptcd1	86	47.125	Cyprinodon_variegatus
ENSRNOG00000000987	Ptcd1	90	46.709	ENSCVAG00000003621	ptcd1	91	46.870	Cyprinodon_variegatus
ENSRNOG00000000987	Ptcd1	92	47.964	ENSDARG00000076176	ptcd1	94	47.813	Danio_rerio
ENSRNOG00000000987	Ptcd1	99	73.202	ENSDNOG00000009957	-	99	73.484	Dasypus_novemcinctus
ENSRNOG00000000987	Ptcd1	99	76.266	ENSDORG00000000740	Ptcd1	100	76.411	Dipodomys_ordii
ENSRNOG00000000987	Ptcd1	91	41.029	ENSEBUG00000014515	ptcd1	96	42.234	Eptatretus_burgeri
ENSRNOG00000000987	Ptcd1	99	76.836	ENSEASG00005002480	-	99	77.119	Equus_asinus_asinus
ENSRNOG00000000987	Ptcd1	99	76.977	ENSECAG00000016617	-	99	77.260	Equus_caballus
ENSRNOG00000000987	Ptcd1	91	46.412	ENSELUG00000016517	ptcd1	83	47.360	Esox_lucius
ENSRNOG00000000987	Ptcd1	99	76.868	ENSFCAG00000015069	-	99	76.901	Felis_catus
ENSRNOG00000000987	Ptcd1	86	61.475	ENSFALG00000013803	-	84	61.639	Ficedula_albicollis
ENSRNOG00000000987	Ptcd1	99	74.928	ENSFDAG00000006393	-	99	74.928	Fukomys_damarensis
ENSRNOG00000000987	Ptcd1	76	48.669	ENSFHEG00000012491	ptcd1	87	48.669	Fundulus_heteroclitus
ENSRNOG00000000987	Ptcd1	84	47.668	ENSGMOG00000007639	ptcd1	91	47.668	Gadus_morhua
ENSRNOG00000000987	Ptcd1	86	58.454	ENSGALG00000004711	-	85	58.615	Gallus_gallus
ENSRNOG00000000987	Ptcd1	85	48.161	ENSGAFG00000013175	ptcd1	82	47.811	Gambusia_affinis
ENSRNOG00000000987	Ptcd1	88	47.812	ENSGACG00000016607	ptcd1	93	47.812	Gasterosteus_aculeatus
ENSRNOG00000000987	Ptcd1	84	60.714	ENSGAGG00000021832	-	84	62.014	Gopherus_agassizii
ENSRNOG00000000987	Ptcd1	99	73.449	ENSGGOG00000015123	-	99	73.449	Gorilla_gorilla
ENSRNOG00000000987	Ptcd1	92	47.123	ENSHBUG00000018275	ptcd1	87	46.594	Haplochromis_burtoni
ENSRNOG00000000987	Ptcd1	99	75.287	ENSHGLG00000017621	-	99	75.287	Heterocephalus_glaber_female
ENSRNOG00000000987	Ptcd1	99	75.287	ENSHGLG00100007218	-	99	75.287	Heterocephalus_glaber_male
ENSRNOG00000000987	Ptcd1	85	46.827	ENSHCOG00000010784	ptcd1	82	47.251	Hippocampus_comes
ENSRNOG00000000987	Ptcd1	99	75.177	ENSSTOG00000001682	-	99	75.319	Ictidomys_tridecemlineatus
ENSRNOG00000000987	Ptcd1	99	77.729	ENSJJAG00000000319	Ptcd1	99	77.438	Jaculus_jaculus
ENSRNOG00000000987	Ptcd1	93	45.884	ENSKMAG00000008708	ptcd1	80	48.464	Kryptolebias_marmoratus
ENSRNOG00000000987	Ptcd1	88	48.197	ENSLBEG00000008061	ptcd1	83	48.276	Labrus_bergylta
ENSRNOG00000000987	Ptcd1	87	58.621	ENSLACG00000011172	ptcd1	83	59.136	Latimeria_chalumnae
ENSRNOG00000000987	Ptcd1	97	51.622	ENSLOCG00000004833	ptcd1	95	54.664	Lepisosteus_oculatus
ENSRNOG00000000987	Ptcd1	98	71.367	ENSLAFG00000002588	-	98	71.511	Loxodonta_africana
ENSRNOG00000000987	Ptcd1	98	74.746	ENSMFAG00000041324	-	98	74.527	Macaca_fascicularis
ENSRNOG00000000987	Ptcd1	98	74.601	ENSMMUG00000030408	-	98	74.381	Macaca_mulatta
ENSRNOG00000000987	Ptcd1	98	74.746	ENSMNEG00000043786	-	98	74.527	Macaca_nemestrina
ENSRNOG00000000987	Ptcd1	98	68.606	ENSMLEG00000031179	-	97	68.606	Mandrillus_leucophaeus
ENSRNOG00000000987	Ptcd1	90	48.095	ENSMAMG00000007623	ptcd1	83	48.019	Mastacembelus_armatus
ENSRNOG00000000987	Ptcd1	92	47.319	ENSMZEG00005012722	ptcd1	87	47.003	Maylandia_zebra
ENSRNOG00000000987	Ptcd1	97	54.913	ENSMGAG00000004211	-	91	54.913	Meleagris_gallopavo
ENSRNOG00000000987	Ptcd1	99	75.252	ENSMICG00000017428	-	99	75.827	Microcebus_murinus
ENSRNOG00000000987	Ptcd1	91	45.886	ENSMMOG00000020243	ptcd1	88	47.692	Mola_mola
ENSRNOG00000000987	Ptcd1	88	64.526	ENSMODG00000001350	-	84	64.355	Monodelphis_domestica
ENSRNOG00000000987	Ptcd1	91	47.702	ENSMALG00000018442	ptcd1	85	47.702	Monopterus_albus
ENSRNOG00000000987	Ptcd1	100	88.201	MGP_CAROLIEiJ_G0028011	Ptcd1	100	88.201	Mus_caroli
ENSRNOG00000000987	Ptcd1	100	88.345	ENSMUSG00000029624	Ptcd1	100	88.345	Mus_musculus
ENSRNOG00000000987	Ptcd1	99	87.752	MGP_PahariEiJ_G0024580	Ptcd1	99	87.752	Mus_pahari
ENSRNOG00000000987	Ptcd1	100	88.201	MGP_SPRETEiJ_G0029012	Ptcd1	100	88.201	Mus_spretus
ENSRNOG00000000987	Ptcd1	98	76.239	ENSMPUG00000016518	-	99	76.868	Mustela_putorius_furo
ENSRNOG00000000987	Ptcd1	99	76.034	ENSMLUG00000010994	-	93	76.605	Myotis_lucifugus
ENSRNOG00000000987	Ptcd1	90	46.919	ENSNBRG00000010079	ptcd1	85	47.565	Neolamprologus_brichardi
ENSRNOG00000000987	Ptcd1	78	78.505	ENSNLEG00000011060	-	90	78.505	Nomascus_leucogenys
ENSRNOG00000000987	Ptcd1	98	60.115	ENSMEUG00000006930	-	99	60.115	Notamacropus_eugenii
ENSRNOG00000000987	Ptcd1	88	75.181	ENSOPRG00000013647	-	87	75.181	Ochotona_princeps
ENSRNOG00000000987	Ptcd1	89	46.656	ENSONIG00000003168	ptcd1	99	46.078	Oreochromis_niloticus
ENSRNOG00000000987	Ptcd1	82	54.561	ENSOANG00000007728	-	73	54.974	Ornithorhynchus_anatinus
ENSRNOG00000000987	Ptcd1	98	73.343	ENSOCUG00000010584	-	96	73.199	Oryctolagus_cuniculus
ENSRNOG00000000987	Ptcd1	85	49.073	ENSORLG00000009275	ptcd1	83	48.900	Oryzias_latipes
ENSRNOG00000000987	Ptcd1	85	47.987	ENSORLG00020000988	ptcd1	84	47.643	Oryzias_latipes_hni
ENSRNOG00000000987	Ptcd1	85	48.490	ENSORLG00015010557	ptcd1	84	48.316	Oryzias_latipes_hsok
ENSRNOG00000000987	Ptcd1	91	47.642	ENSOMEG00000020627	ptcd1	91	47.179	Oryzias_melastigma
ENSRNOG00000000987	Ptcd1	98	71.676	ENSOGAG00000010877	-	99	71.821	Otolemur_garnettii
ENSRNOG00000000987	Ptcd1	99	69.397	ENSOARG00000018676	-	99	69.540	Ovis_aries
ENSRNOG00000000987	Ptcd1	98	73.217	ENSPPAG00000036024	-	98	73.217	Pan_paniscus
ENSRNOG00000000987	Ptcd1	99	77.826	ENSPPRG00000003478	-	99	77.858	Panthera_pardus
ENSRNOG00000000987	Ptcd1	98	73.217	ENSPTRG00000019452	-	98	73.217	Pan_troglodytes
ENSRNOG00000000987	Ptcd1	98	75.036	ENSPANG00000016730	-	98	74.818	Papio_anubis
ENSRNOG00000000987	Ptcd1	93	51.767	ENSPKIG00000014215	ptcd1	93	51.538	Paramormyrops_kingsleyae
ENSRNOG00000000987	Ptcd1	86	59.333	ENSPSIG00000011184	-	100	59.333	Pelodiscus_sinensis
ENSRNOG00000000987	Ptcd1	75	41.923	ENSPMAG00000009667	ptcd1	100	41.923	Petromyzon_marinus
ENSRNOG00000000987	Ptcd1	88	66.132	ENSPCIG00000024778	-	90	62.064	Phascolarctos_cinereus
ENSRNOG00000000987	Ptcd1	87	47.117	ENSPFOG00000004458	ptcd1	85	46.538	Poecilia_formosa
ENSRNOG00000000987	Ptcd1	85	47.819	ENSPLAG00000011051	ptcd1	84	47.438	Poecilia_latipinna
ENSRNOG00000000987	Ptcd1	87	47.282	ENSPMEG00000020547	ptcd1	85	46.699	Poecilia_mexicana
ENSRNOG00000000987	Ptcd1	84	47.643	ENSPREG00000000059	ptcd1	82	47.483	Poecilia_reticulata
ENSRNOG00000000987	Ptcd1	93	75.621	ENSPPYG00000017377	-	97	75.621	Pongo_abelii
ENSRNOG00000000987	Ptcd1	80	73.095	ENSPCAG00000001852	-	86	73.095	Procavia_capensis
ENSRNOG00000000987	Ptcd1	98	75.617	ENSPCOG00000018596	-	98	76.197	Propithecus_coquereli
ENSRNOG00000000987	Ptcd1	67	87.000	ENSPVAG00000007529	-	73	87.000	Pteropus_vampyrus
ENSRNOG00000000987	Ptcd1	92	47.319	ENSPNYG00000019993	ptcd1	87	46.782	Pundamilia_nyererei
ENSRNOG00000000987	Ptcd1	93	49.165	ENSPNAG00000014931	ptcd1	91	50.233	Pygocentrus_nattereri
ENSRNOG00000000987	Ptcd1	98	75.110	ENSRBIG00000043393	-	97	74.890	Rhinopithecus_bieti
ENSRNOG00000000987	Ptcd1	98	75.110	ENSRROG00000036420	-	97	74.890	Rhinopithecus_roxellana
ENSRNOG00000000987	Ptcd1	99	73.919	ENSSBOG00000024114	-	99	73.631	Saimiri_boliviensis_boliviensis
ENSRNOG00000000987	Ptcd1	90	60.601	ENSSHAG00000011376	-	95	60.601	Sarcophilus_harrisii
ENSRNOG00000000987	Ptcd1	91	53.106	ENSSFOG00015007909	ptcd1	86	53.333	Scleropages_formosus
ENSRNOG00000000987	Ptcd1	85	47.492	ENSSMAG00000000218	ptcd1	91	47.980	Scophthalmus_maximus
ENSRNOG00000000987	Ptcd1	98	45.231	ENSSDUG00000015671	ptcd1	95	44.942	Seriola_dumerili
ENSRNOG00000000987	Ptcd1	94	46.466	ENSSLDG00000014261	ptcd1	92	45.414	Seriola_lalandi_dorsalis
ENSRNOG00000000987	Ptcd1	87	58.387	ENSSPUG00000003540	-	82	58.728	Sphenodon_punctatus
ENSRNOG00000000987	Ptcd1	87	48.450	ENSSPAG00000011049	ptcd1	82	48.613	Stegastes_partitus
ENSRNOG00000000987	Ptcd1	91	78.344	ENSSSCG00000007622	-	97	77.019	Sus_scrofa
ENSRNOG00000000987	Ptcd1	87	60.797	ENSTGUG00000007563	-	96	61.345	Taeniopygia_guttata
ENSRNOG00000000987	Ptcd1	94	45.525	ENSTRUG00000013471	ptcd1	83	47.049	Takifugu_rubripes
ENSRNOG00000000987	Ptcd1	96	44.510	ENSTNIG00000008271	ptcd1	87	47.039	Tetraodon_nigroviridis
ENSRNOG00000000987	Ptcd1	99	74.640	ENSTBEG00000011021	-	99	74.496	Tupaia_belangeri
ENSRNOG00000000987	Ptcd1	98	74.425	ENSTTRG00000003006	-	98	74.282	Tursiops_truncatus
ENSRNOG00000000987	Ptcd1	99	77.952	ENSUAMG00000008049	-	99	77.809	Ursus_americanus
ENSRNOG00000000987	Ptcd1	99	76.734	ENSVVUG00000008836	-	99	76.768	Vulpes_vulpes
ENSRNOG00000000987	Ptcd1	94	53.159	ENSXETG00000009891	ptcd1	94	52.977	Xenopus_tropicalis
ENSRNOG00000000987	Ptcd1	85	47.723	ENSXMAG00000015540	ptcd1	81	47.797	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0000049	tRNA binding	-	ISS	Function
GO:0005759	mitochondrial matrix	21873635.	IBA	Component
GO:0005759	mitochondrial matrix	19651879.	IDA	Component
GO:0042780	tRNA 3'-end processing	21873635.	IBA	Process
GO:0042780	tRNA 3'-end processing	-	ISS	Process