EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001043 (Gene tree)
Gene ID: 100362764
Gene Symbol: Ddx55
Alias: LOC100362764|LOC304468
Full Name: DEAD-box helicase 55
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 15931 bases
Position: chr12:37453005-37468935
Accession: 2324094
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001387	ResIII	PF04851.15	6.4e-07	1	1
ENSRNOP00000001387	DEAD	PF00270.29	1.1e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001387	-	2343	-	ENSRNOP00000001387	600 (aa)	-	D3ZX56

Gene Model

Click here to download ENSRNOG00000001043's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001043's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000001043	Ddx55	63	30.846	ENSRNOG00000002612	Ddx52	62	30.846
ENSRNOG00000001043	Ddx55	59	30.194	ENSRNOG00000030680	Ddx5	56	30.194
ENSRNOG00000001043	Ddx55	58	32.479	ENSRNOG00000053932	Ddx6	68	32.479
ENSRNOG00000001043	Ddx55	59	30.833	ENSRNOG00000030628	Eif4a1	95	30.244
ENSRNOG00000001043	Ddx55	60	34.908	ENSRNOG00000023383	Ddx3x	55	34.908
ENSRNOG00000001043	Ddx55	75	37.969	ENSRNOG00000012500	Ddx10	50	37.969
ENSRNOG00000001043	Ddx55	79	36.458	ENSRNOG00000025430	Ddx18	67	36.611
ENSRNOG00000001043	Ddx55	75	31.008	ENSRNOG00000013040	Ddx31	75	31.008
ENSRNOG00000001043	Ddx55	58	31.161	ENSRNOG00000042451	Ddx59	54	31.161
ENSRNOG00000001043	Ddx55	60	41.791	ENSRNOG00000006652	Ddx1	55	41.791
ENSRNOG00000001043	Ddx55	59	32.964	ENSRNOG00000051170	Ddx17	53	32.964
ENSRNOG00000001043	Ddx55	63	40.230	ENSRNOG00000009166	Ddx24	51	40.230
ENSRNOG00000001043	Ddx55	58	33.240	ENSRNOG00000022368	Ddx49	70	33.240
ENSRNOG00000001043	Ddx55	60	34.646	ENSRNOG00000057231	Ddx3	55	34.646
ENSRNOG00000001043	Ddx55	58	35.897	ENSRNOG00000007838	Ddx47	73	35.897
ENSRNOG00000001043	Ddx55	59	32.143	ENSRNOG00000050868	Ddx43	53	32.143
ENSRNOG00000001043	Ddx55	61	35.027	ENSRNOG00000012771	Ddx41	57	34.840
ENSRNOG00000001043	Ddx55	59	30.194	ENSRNOG00000001815	Eif4a2	93	30.194
ENSRNOG00000001043	Ddx55	60	35.433	ENSRNOG00000002501	Ddx3y	55	35.433

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001043	Ddx55	99	90.985	ENSG00000111364	DDX55	96	94.536	Homo_sapiens
ENSRNOG00000001043	Ddx55	97	73.846	ENSAPOG00000013126	ddx55	99	73.846	Acanthochromis_polyacanthus
ENSRNOG00000001043	Ddx55	99	87.479	ENSAMEG00000015274	DDX55	99	87.479	Ailuropoda_melanoleuca
ENSRNOG00000001043	Ddx55	97	74.486	ENSACIG00000007580	ddx55	99	74.486	Amphilophus_citrinellus
ENSRNOG00000001043	Ddx55	97	73.675	ENSAOCG00000012037	ddx55	92	73.675	Amphiprion_ocellaris
ENSRNOG00000001043	Ddx55	97	73.846	ENSAPEG00000011003	ddx55	92	73.846	Amphiprion_percula
ENSRNOG00000001043	Ddx55	99	70.952	ENSATEG00000004029	ddx55	99	70.952	Anabas_testudineus
ENSRNOG00000001043	Ddx55	94	76.937	ENSAPLG00000015032	DDX55	99	76.855	Anas_platyrhynchos
ENSRNOG00000001043	Ddx55	97	83.590	ENSACAG00000015296	DDX55	98	83.590	Anolis_carolinensis
ENSRNOG00000001043	Ddx55	93	87.535	ENSANAG00000034064	DDX55	100	87.535	Aotus_nancymaae
ENSRNOG00000001043	Ddx55	97	73.630	ENSACLG00000024691	ddx55	99	73.630	Astatotilapia_calliptera
ENSRNOG00000001043	Ddx55	96	69.618	ENSAMXG00000019947	ddx55	95	69.618	Astyanax_mexicanus
ENSRNOG00000001043	Ddx55	99	88.833	ENSBTAG00000007266	DDX55	99	84.000	Bos_taurus
ENSRNOG00000001043	Ddx55	94	36.807	WBGene00013983	ZK512.2	99	36.163	Caenorhabditis_elegans
ENSRNOG00000001043	Ddx55	100	89.667	ENSCJAG00000020471	-	100	89.667	Callithrix_jacchus
ENSRNOG00000001043	Ddx55	99	87.312	ENSCAFG00000007452	DDX55	99	87.479	Canis_familiaris
ENSRNOG00000001043	Ddx55	90	88.376	ENSCAFG00020015254	DDX55	94	88.889	Canis_lupus_dingo
ENSRNOG00000001043	Ddx55	99	89.167	ENSCHIG00000020402	DDX55	99	89.167	Capra_hircus
ENSRNOG00000001043	Ddx55	99	89.816	ENSTSYG00000007427	DDX55	99	89.816	Carlito_syrichta
ENSRNOG00000001043	Ddx55	97	86.207	ENSCAPG00000005124	DDX55	98	86.736	Cavia_aperea
ENSRNOG00000001043	Ddx55	99	87.479	ENSCPOG00000010015	DDX55	99	87.479	Cavia_porcellus
ENSRNOG00000001043	Ddx55	100	89.833	ENSCCAG00000021652	DDX55	100	89.833	Cebus_capucinus
ENSRNOG00000001043	Ddx55	100	86.043	ENSCATG00000034315	DDX55	99	86.184	Cercocebus_atys
ENSRNOG00000001043	Ddx55	99	88.629	ENSCLAG00000011203	DDX55	99	88.629	Chinchilla_lanigera
ENSRNOG00000001043	Ddx55	99	90.317	ENSCSAG00000002057	DDX55	99	90.317	Chlorocebus_sabaeus
ENSRNOG00000001043	Ddx55	57	91.837	ENSCHOG00000006189	-	60	91.837	Choloepus_hoffmanni
ENSRNOG00000001043	Ddx55	87	87.356	ENSCPBG00000025960	DDX55	96	87.356	Chrysemys_picta_bellii
ENSRNOG00000001043	Ddx55	96	53.898	ENSCING00000009622	-	98	53.390	Ciona_intestinalis
ENSRNOG00000001043	Ddx55	95	53.093	ENSCSAVG00000003375	-	97	53.368	Ciona_savignyi
ENSRNOG00000001043	Ddx55	99	90.818	ENSCANG00000000156	DDX55	99	90.818	Colobus_angolensis_palliatus
ENSRNOG00000001043	Ddx55	100	94.333	ENSCGRG00001001652	Ddx55	100	94.333	Cricetulus_griseus_chok1gshd
ENSRNOG00000001043	Ddx55	100	94.167	ENSCGRG00000014742	Ddx55	100	94.167	Cricetulus_griseus_crigri
ENSRNOG00000001043	Ddx55	98	72.184	ENSCSEG00000012161	ddx55	98	72.184	Cynoglossus_semilaevis
ENSRNOG00000001043	Ddx55	97	73.846	ENSCVAG00000006635	ddx55	99	73.846	Cyprinodon_variegatus
ENSRNOG00000001043	Ddx55	99	73.833	ENSDARG00000009864	ddx55	100	73.833	Danio_rerio
ENSRNOG00000001043	Ddx55	99	89.167	ENSDNOG00000005167	DDX55	99	89.167	Dasypus_novemcinctus
ENSRNOG00000001043	Ddx55	95	47.173	FBgn0037561	CG9630	98	48.020	Drosophila_melanogaster
ENSRNOG00000001043	Ddx55	94	74.067	ENSETEG00000001826	DDX55	99	74.067	Echinops_telfairi
ENSRNOG00000001043	Ddx55	95	66.154	ENSEBUG00000007071	ddx55	98	66.120	Eptatretus_burgeri
ENSRNOG00000001043	Ddx55	99	90.301	ENSEASG00005012650	DDX55	99	90.301	Equus_asinus_asinus
ENSRNOG00000001043	Ddx55	87	91.762	ENSECAG00000011237	DDX55	84	91.762	Equus_caballus
ENSRNOG00000001043	Ddx55	100	77.667	ENSEEUG00000006313	DDX55	100	77.667	Erinaceus_europaeus
ENSRNOG00000001043	Ddx55	99	71.358	ENSELUG00000002616	ddx55	99	71.358	Esox_lucius
ENSRNOG00000001043	Ddx55	99	88.147	ENSFCAG00000003770	DDX55	99	88.147	Felis_catus
ENSRNOG00000001043	Ddx55	99	82.550	ENSFALG00000009300	DDX55	100	82.550	Ficedula_albicollis
ENSRNOG00000001043	Ddx55	99	88.294	ENSFDAG00000004680	DDX55	99	88.294	Fukomys_damarensis
ENSRNOG00000001043	Ddx55	97	72.945	ENSFHEG00000007912	ddx55	99	72.945	Fundulus_heteroclitus
ENSRNOG00000001043	Ddx55	96	69.775	ENSGMOG00000017762	ddx55	96	69.948	Gadus_morhua
ENSRNOG00000001043	Ddx55	97	83.219	ENSGALG00000003298	DDX55	99	83.219	Gallus_gallus
ENSRNOG00000001043	Ddx55	97	73.196	ENSGAFG00000004388	ddx55	99	73.196	Gambusia_affinis
ENSRNOG00000001043	Ddx55	98	73.083	ENSGACG00000015591	ddx55	97	72.287	Gasterosteus_aculeatus
ENSRNOG00000001043	Ddx55	90	85.978	ENSGAGG00000014403	DDX55	96	86.590	Gopherus_agassizii
ENSRNOG00000001043	Ddx55	99	91.152	ENSGGOG00000026102	DDX55	99	91.152	Gorilla_gorilla
ENSRNOG00000001043	Ddx55	97	73.630	ENSHBUG00000011523	ddx55	99	73.630	Haplochromis_burtoni
ENSRNOG00000001043	Ddx55	99	88.294	ENSHGLG00000019202	DDX55	99	88.294	Heterocephalus_glaber_female
ENSRNOG00000001043	Ddx55	99	88.294	ENSHGLG00100019440	DDX55	99	88.294	Heterocephalus_glaber_male
ENSRNOG00000001043	Ddx55	96	65.398	ENSHCOG00000004710	ddx55	99	65.398	Hippocampus_comes
ENSRNOG00000001043	Ddx55	99	72.101	ENSIPUG00000014551	ddx55	98	72.101	Ictalurus_punctatus
ENSRNOG00000001043	Ddx55	99	89.316	ENSSTOG00000006121	DDX55	99	89.316	Ictidomys_tridecemlineatus
ENSRNOG00000001043	Ddx55	99	90.484	ENSJJAG00000013401	Ddx55	99	90.484	Jaculus_jaculus
ENSRNOG00000001043	Ddx55	98	72.913	ENSKMAG00000022006	ddx55	99	72.913	Kryptolebias_marmoratus
ENSRNOG00000001043	Ddx55	99	72.000	ENSLBEG00000021815	ddx55	99	72.000	Labrus_bergylta
ENSRNOG00000001043	Ddx55	97	80.000	ENSLACG00000017050	DDX55	97	80.000	Latimeria_chalumnae
ENSRNOG00000001043	Ddx55	100	73.667	ENSLOCG00000005828	ddx55	99	73.667	Lepisosteus_oculatus
ENSRNOG00000001043	Ddx55	99	91.319	ENSLAFG00000007293	DDX55	100	91.319	Loxodonta_africana
ENSRNOG00000001043	Ddx55	99	90.818	ENSMFAG00000038165	DDX55	99	90.818	Macaca_fascicularis
ENSRNOG00000001043	Ddx55	99	91.152	ENSMMUG00000013178	DDX55	99	91.152	Macaca_mulatta
ENSRNOG00000001043	Ddx55	99	90.818	ENSMNEG00000028630	DDX55	99	90.818	Macaca_nemestrina
ENSRNOG00000001043	Ddx55	100	91.000	ENSMLEG00000039187	DDX55	100	91.000	Mandrillus_leucophaeus
ENSRNOG00000001043	Ddx55	99	73.077	ENSMAMG00000011297	ddx55	99	73.077	Mastacembelus_armatus
ENSRNOG00000001043	Ddx55	97	73.630	ENSMZEG00005008047	ddx55	99	73.630	Maylandia_zebra
ENSRNOG00000001043	Ddx55	99	78.559	ENSMGAG00000003185	DDX55	99	78.559	Meleagris_gallopavo
ENSRNOG00000001043	Ddx55	100	95.500	ENSMAUG00000020054	Ddx55	100	95.500	Mesocricetus_auratus
ENSRNOG00000001043	Ddx55	100	82.529	ENSMICG00000006477	DDX55	100	82.529	Microcebus_murinus
ENSRNOG00000001043	Ddx55	100	95.333	ENSMOCG00000021289	Ddx55	100	95.333	Microtus_ochrogaster
ENSRNOG00000001043	Ddx55	99	72.047	ENSMMOG00000009411	ddx55	99	72.047	Mola_mola
ENSRNOG00000001043	Ddx55	94	86.170	ENSMODG00000012519	DDX55	95	87.956	Monodelphis_domestica
ENSRNOG00000001043	Ddx55	99	68.719	ENSMALG00000018543	ddx55	99	68.719	Monopterus_albus
ENSRNOG00000001043	Ddx55	74	97.753	MGP_CAROLIEiJ_G0027755	-	99	97.753	Mus_caroli
ENSRNOG00000001043	Ddx55	100	97.167	ENSMUSG00000029389	Ddx55	100	97.167	Mus_musculus
ENSRNOG00000001043	Ddx55	100	93.167	MGP_PahariEiJ_G0024335	Ddx55	100	93.167	Mus_pahari
ENSRNOG00000001043	Ddx55	100	97.000	MGP_SPRETEiJ_G0028753	Ddx55	100	97.000	Mus_spretus
ENSRNOG00000001043	Ddx55	99	83.833	ENSMPUG00000001505	DDX55	99	83.833	Mustela_putorius_furo
ENSRNOG00000001043	Ddx55	100	79.833	ENSMLUG00000001265	-	100	79.000	Myotis_lucifugus
ENSRNOG00000001043	Ddx55	87	76.762	ENSMLUG00000025148	-	96	76.762	Myotis_lucifugus
ENSRNOG00000001043	Ddx55	99	91.987	ENSNGAG00000020564	Ddx55	99	91.987	Nannospalax_galili
ENSRNOG00000001043	Ddx55	97	73.630	ENSNBRG00000018748	ddx55	99	73.630	Neolamprologus_brichardi
ENSRNOG00000001043	Ddx55	99	91.319	ENSNLEG00000001658	DDX55	100	91.319	Nomascus_leucogenys
ENSRNOG00000001043	Ddx55	99	81.469	ENSMEUG00000013689	DDX55	99	81.469	Notamacropus_eugenii
ENSRNOG00000001043	Ddx55	97	89.212	ENSOPRG00000000850	DDX55	97	89.212	Ochotona_princeps
ENSRNOG00000001043	Ddx55	93	73.036	ENSODEG00000016592	-	100	73.750	Octodon_degus
ENSRNOG00000001043	Ddx55	99	87.310	ENSODEG00000009632	-	99	87.310	Octodon_degus
ENSRNOG00000001043	Ddx55	99	72.408	ENSONIG00000015311	ddx55	99	72.408	Oreochromis_niloticus
ENSRNOG00000001043	Ddx55	94	87.034	ENSOANG00000015332	DDX55	99	87.478	Ornithorhynchus_anatinus
ENSRNOG00000001043	Ddx55	99	88.462	ENSOCUG00000003456	DDX55	99	88.462	Oryctolagus_cuniculus
ENSRNOG00000001043	Ddx55	97	72.774	ENSORLG00000029482	ddx55	98	72.774	Oryzias_latipes
ENSRNOG00000001043	Ddx55	97	72.603	ENSORLG00015004885	ddx55	98	72.603	Oryzias_latipes_hsok
ENSRNOG00000001043	Ddx55	98	74.232	ENSOMEG00000023619	ddx55	99	74.232	Oryzias_melastigma
ENSRNOG00000001043	Ddx55	100	88.500	ENSOGAG00000009195	DDX55	99	88.500	Otolemur_garnettii
ENSRNOG00000001043	Ddx55	99	89.500	ENSOARG00000003364	DDX55	99	89.500	Ovis_aries
ENSRNOG00000001043	Ddx55	99	90.651	ENSPPAG00000005988	DDX55	99	90.651	Pan_paniscus
ENSRNOG00000001043	Ddx55	99	88.481	ENSPPRG00000012157	DDX55	99	88.481	Panthera_pardus
ENSRNOG00000001043	Ddx55	94	88.810	ENSPTIG00000011490	DDX55	94	88.810	Panthera_tigris_altaica
ENSRNOG00000001043	Ddx55	99	90.651	ENSPTRG00000005601	DDX55	99	90.651	Pan_troglodytes
ENSRNOG00000001043	Ddx55	99	91.152	ENSPANG00000007905	DDX55	99	91.152	Papio_anubis
ENSRNOG00000001043	Ddx55	98	75.170	ENSPKIG00000023661	ddx55	100	75.170	Paramormyrops_kingsleyae
ENSRNOG00000001043	Ddx55	93	83.453	ENSPSIG00000012901	DDX55	100	83.696	Pelodiscus_sinensis
ENSRNOG00000001043	Ddx55	90	71.587	ENSPMGG00000017224	ddx55	96	71.648	Periophthalmus_magnuspinnatus
ENSRNOG00000001043	Ddx55	100	95.333	ENSPEMG00000018052	Ddx55	100	95.333	Peromyscus_maniculatus_bairdii
ENSRNOG00000001043	Ddx55	85	66.473	ENSPMAG00000007486	ddx55	99	66.216	Petromyzon_marinus
ENSRNOG00000001043	Ddx55	87	88.123	ENSPCIG00000010973	DDX55	94	88.123	Phascolarctos_cinereus
ENSRNOG00000001043	Ddx55	97	73.459	ENSPFOG00000006970	ddx55	91	73.459	Poecilia_formosa
ENSRNOG00000001043	Ddx55	97	73.368	ENSPLAG00000014735	ddx55	99	73.368	Poecilia_latipinna
ENSRNOG00000001043	Ddx55	97	73.540	ENSPMEG00000020635	ddx55	99	73.540	Poecilia_mexicana
ENSRNOG00000001043	Ddx55	97	72.633	ENSPREG00000016644	ddx55	99	72.633	Poecilia_reticulata
ENSRNOG00000001043	Ddx55	99	89.316	ENSPPYG00000005091	DDX55	99	88.815	Pongo_abelii
ENSRNOG00000001043	Ddx55	99	88.982	ENSPCAG00000014127	DDX55	99	88.982	Procavia_capensis
ENSRNOG00000001043	Ddx55	100	90.000	ENSPCOG00000011189	DDX55	100	90.000	Propithecus_coquereli
ENSRNOG00000001043	Ddx55	99	87.625	ENSPVAG00000015321	DDX55	99	88.067	Pteropus_vampyrus
ENSRNOG00000001043	Ddx55	97	73.459	ENSPNYG00000003669	ddx55	99	73.459	Pundamilia_nyererei
ENSRNOG00000001043	Ddx55	96	75.433	ENSPNAG00000012855	ddx55	96	75.433	Pygocentrus_nattereri
ENSRNOG00000001043	Ddx55	99	90.484	ENSRBIG00000044699	DDX55	99	90.484	Rhinopithecus_bieti
ENSRNOG00000001043	Ddx55	99	90.818	ENSRROG00000024824	DDX55	99	90.818	Rhinopithecus_roxellana
ENSRNOG00000001043	Ddx55	89	39.367	YFL002C	-	88	39.416	Saccharomyces_cerevisiae
ENSRNOG00000001043	Ddx55	100	90.167	ENSSBOG00000024833	DDX55	100	90.167	Saimiri_boliviensis_boliviensis
ENSRNOG00000001043	Ddx55	94	87.080	ENSSHAG00000015820	DDX55	99	87.080	Sarcophilus_harrisii
ENSRNOG00000001043	Ddx55	96	76.511	ENSSFOG00015017496	ddx55	95	76.511	Scleropages_formosus
ENSRNOG00000001043	Ddx55	99	71.927	ENSSMAG00000010441	ddx55	99	71.927	Scophthalmus_maximus
ENSRNOG00000001043	Ddx55	99	72.379	ENSSDUG00000023568	ddx55	99	72.379	Seriola_dumerili
ENSRNOG00000001043	Ddx55	99	67.167	ENSSLDG00000011299	ddx55	99	67.167	Seriola_lalandi_dorsalis
ENSRNOG00000001043	Ddx55	90	85.714	ENSSARG00000003842	DDX55	99	84.436	Sorex_araneus
ENSRNOG00000001043	Ddx55	98	83.590	ENSSPUG00000012798	DDX55	100	82.167	Sphenodon_punctatus
ENSRNOG00000001043	Ddx55	99	72.773	ENSSPAG00000011806	ddx55	99	72.773	Stegastes_partitus
ENSRNOG00000001043	Ddx55	87	91.762	ENSSSCG00000009771	DDX55	94	91.762	Sus_scrofa
ENSRNOG00000001043	Ddx55	97	82.383	ENSTGUG00000005302	-	99	81.525	Taeniopygia_guttata
ENSRNOG00000001043	Ddx55	99	70.667	ENSTRUG00000018525	ddx55	99	70.667	Takifugu_rubripes
ENSRNOG00000001043	Ddx55	100	70.050	ENSTNIG00000013515	DDX55	100	70.050	Tetraodon_nigroviridis
ENSRNOG00000001043	Ddx55	74	83.333	ENSTBEG00000010822	DDX55	100	83.333	Tupaia_belangeri
ENSRNOG00000001043	Ddx55	99	89.316	ENSTTRG00000007251	DDX55	99	89.316	Tursiops_truncatus
ENSRNOG00000001043	Ddx55	99	86.978	ENSUAMG00000012589	DDX55	99	86.978	Ursus_americanus
ENSRNOG00000001043	Ddx55	93	87.230	ENSUMAG00000003869	DDX55	99	87.230	Ursus_maritimus
ENSRNOG00000001043	Ddx55	93	83.633	ENSVPAG00000007028	DDX55	99	83.633	Vicugna_pacos
ENSRNOG00000001043	Ddx55	98	88.547	ENSVVUG00000027506	DDX55	99	88.660	Vulpes_vulpes
ENSRNOG00000001043	Ddx55	98	78.974	ENSXETG00000005825	ddx55	98	78.974	Xenopus_tropicalis
ENSRNOG00000001043	Ddx55	97	73.711	ENSXCOG00000010120	ddx55	99	73.711	Xiphophorus_couchianus
ENSRNOG00000001043	Ddx55	97	73.883	ENSXMAG00000011731	ddx55	99	73.883	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component