EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001064 (Gene tree)
Gene ID: 304470
Gene Symbol: Sbno1
Alias: LOC304470
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 55163 bases
Position: chr12:37593874-37649036
Accession: 1310005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000072577	ResIII	PF04851.15	1.5e-07	1	1
ENSRNOP00000073430	ResIII	PF04851.15	2e-07	1	1
ENSRNOP00000054711	ResIII	PF04851.15	2.2e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000088787	-	4521	XM_006249300	ENSRNOP00000073430	1392 (aa)	XP_006249362	A0A0G2K5H7
ENSRNOT00000057902	-	5357	-	ENSRNOP00000054711	1241 (aa)	-	F1LS26
ENSRNOT00000088006	-	3810	-	ENSRNOP00000072577	1269 (aa)	-	A0A0G2K3C0

Gene Model

Click here to download ENSRNOG00000001064's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001064's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000001064	Sbno1	82	57.495	ENSRNOG00000013987	Sbno2	78	60.421

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001064	Sbno1	99	99.457	ENSG00000139697	SBNO1	99	97.342	Homo_sapiens
ENSRNOG00000001064	Sbno1	84	82.857	ENSAPOG00000003196	sbno1	98	80.498	Acanthochromis_polyacanthus
ENSRNOG00000001064	Sbno1	99	98.039	ENSAMEG00000015151	SBNO1	99	97.276	Ailuropoda_melanoleuca
ENSRNOG00000001064	Sbno1	99	81.579	ENSACIG00000008088	sbno1	95	81.436	Amphilophus_citrinellus
ENSRNOG00000001064	Sbno1	99	82.143	ENSAOCG00000014859	sbno1	94	81.996	Amphiprion_ocellaris
ENSRNOG00000001064	Sbno1	99	82.143	ENSAPEG00000006069	sbno1	99	74.596	Amphiprion_percula
ENSRNOG00000001064	Sbno1	99	84.448	ENSATEG00000006667	sbno1	95	84.296	Anabas_testudineus
ENSRNOG00000001064	Sbno1	99	95.290	ENSAPLG00000015674	SBNO1	99	91.960	Anas_platyrhynchos
ENSRNOG00000001064	Sbno1	99	93.537	ENSACAG00000015441	SBNO1	84	93.705	Anolis_carolinensis
ENSRNOG00000001064	Sbno1	99	98.913	ENSANAG00000029958	-	99	98.913	Aotus_nancymaae
ENSRNOG00000001064	Sbno1	99	74.265	ENSACLG00000024913	sbno1	99	74.429	Astatotilapia_calliptera
ENSRNOG00000001064	Sbno1	99	86.667	ENSAMXG00000019473	sbno1	95	86.511	Astyanax_mexicanus
ENSRNOG00000001064	Sbno1	100	97.509	ENSBTAG00000020505	SBNO1	100	97.487	Bos_taurus
ENSRNOG00000001064	Sbno1	99	99.275	ENSCJAG00000016599	SBNO1	99	97.126	Callithrix_jacchus
ENSRNOG00000001064	Sbno1	99	98.736	ENSCAFG00000007503	SBNO1	99	97.212	Canis_familiaris
ENSRNOG00000001064	Sbno1	99	97.163	ENSCAFG00020015363	SBNO1	99	97.163	Canis_lupus_dingo
ENSRNOG00000001064	Sbno1	100	97.509	ENSCHIG00000008382	SBNO1	100	97.272	Capra_hircus
ENSRNOG00000001064	Sbno1	99	99.638	ENSTSYG00000012749	SBNO1	99	97.486	Carlito_syrichta
ENSRNOG00000001064	Sbno1	97	99.099	ENSCAPG00000000384	SBNO1	99	98.217	Cavia_aperea
ENSRNOG00000001064	Sbno1	99	99.094	ENSCPOG00000008109	SBNO1	99	99.094	Cavia_porcellus
ENSRNOG00000001064	Sbno1	99	93.861	ENSCCAG00000035316	SBNO1	99	92.749	Cebus_capucinus
ENSRNOG00000001064	Sbno1	99	99.457	ENSCATG00000008239	SBNO1	98	99.457	Cercocebus_atys
ENSRNOG00000001064	Sbno1	99	99.094	ENSCLAG00000008995	SBNO1	99	99.094	Chinchilla_lanigera
ENSRNOG00000001064	Sbno1	84	98.217	ENSCSAG00000002064	SBNO1	99	98.617	Chlorocebus_sabaeus
ENSRNOG00000001064	Sbno1	95	98.537	ENSCHOG00000008814	SBNO1	96	93.942	Choloepus_hoffmanni
ENSRNOG00000001064	Sbno1	99	94.614	ENSCPBG00000025968	SBNO1	99	91.882	Chrysemys_picta_bellii
ENSRNOG00000001064	Sbno1	99	92.109	ENSCANG00000042688	-	99	92.037	Colobus_angolensis_palliatus
ENSRNOG00000001064	Sbno1	99	98.896	ENSCGRG00001017470	Sbno1	99	98.896	Cricetulus_griseus_chok1gshd
ENSRNOG00000001064	Sbno1	99	98.896	ENSCGRG00000004756	Sbno1	99	98.896	Cricetulus_griseus_crigri
ENSRNOG00000001064	Sbno1	99	82.821	ENSCSEG00000011919	sbno1	96	81.818	Cynoglossus_semilaevis
ENSRNOG00000001064	Sbno1	99	82.944	ENSCVAG00000007038	sbno1	95	82.796	Cyprinodon_variegatus
ENSRNOG00000001064	Sbno1	99	86.257	ENSDARG00000099080	sbno1	95	86.257	Danio_rerio
ENSRNOG00000001064	Sbno1	99	96.292	ENSDNOG00000017147	SBNO1	98	97.431	Dasypus_novemcinctus
ENSRNOG00000001064	Sbno1	99	97.683	ENSDORG00000015261	Sbno1	95	97.683	Dipodomys_ordii
ENSRNOG00000001064	Sbno1	92	100.000	ENSETEG00000005620	SBNO1	88	99.291	Echinops_telfairi
ENSRNOG00000001064	Sbno1	72	84.729	ENSEBUG00000013823	sbno1	85	84.729	Eptatretus_burgeri
ENSRNOG00000001064	Sbno1	57	93.371	ENSEASG00005012595	-	91	96.861	Equus_asinus_asinus
ENSRNOG00000001064	Sbno1	99	97.861	ENSECAG00000006127	SBNO1	99	97.924	Equus_caballus
ENSRNOG00000001064	Sbno1	83	97.814	ENSEEUG00000003793	SBNO1	83	97.814	Erinaceus_europaeus
ENSRNOG00000001064	Sbno1	99	86.486	ENSELUG00000002886	sbno1	95	86.331	Esox_lucius
ENSRNOG00000001064	Sbno1	100	98.043	ENSFCAG00000015331	SBNO1	100	97.559	Felis_catus
ENSRNOG00000001064	Sbno1	99	95.833	ENSFALG00000009273	SBNO1	99	92.032	Ficedula_albicollis
ENSRNOG00000001064	Sbno1	99	95.109	ENSFDAG00000014232	SBNO1	100	94.903	Fukomys_damarensis
ENSRNOG00000001064	Sbno1	99	83.124	ENSFHEG00000007360	sbno1	95	82.975	Fundulus_heteroclitus
ENSRNOG00000001064	Sbno1	96	84.220	ENSGMOG00000018229	sbno1	94	84.220	Gadus_morhua
ENSRNOG00000001064	Sbno1	98	92.073	ENSGALG00000003392	SBNO1	94	97.208	Gallus_gallus
ENSRNOG00000001064	Sbno1	99	83.303	ENSGAFG00000003960	sbno1	95	83.154	Gambusia_affinis
ENSRNOG00000001064	Sbno1	96	84.124	ENSGACG00000015633	sbno1	94	84.124	Gasterosteus_aculeatus
ENSRNOG00000001064	Sbno1	99	94.794	ENSGAGG00000001065	SBNO1	99	95.109	Gopherus_agassizii
ENSRNOG00000001064	Sbno1	99	99.457	ENSGGOG00000015000	SBNO1	99	97.792	Gorilla_gorilla
ENSRNOG00000001064	Sbno1	99	68.594	ENSHBUG00000011910	sbno1	99	68.777	Haplochromis_burtoni
ENSRNOG00000001064	Sbno1	99	99.094	ENSHGLG00000014165	-	99	99.094	Heterocephalus_glaber_female
ENSRNOG00000001064	Sbno1	91	87.158	ENSHCOG00000003246	sbno1	95	84.585	Hippocampus_comes
ENSRNOG00000001064	Sbno1	99	85.612	ENSIPUG00000015830	Sbno1	93	88.978	Ictalurus_punctatus
ENSRNOG00000001064	Sbno1	99	98.217	ENSSTOG00000023221	SBNO1	99	99.275	Ictidomys_tridecemlineatus
ENSRNOG00000001064	Sbno1	99	98.039	ENSJJAG00000001741	Sbno1	99	97.342	Jaculus_jaculus
ENSRNOG00000001064	Sbno1	99	84.000	ENSKMAG00000009696	sbno1	95	84.000	Kryptolebias_marmoratus
ENSRNOG00000001064	Sbno1	99	85.353	ENSLBEG00000007623	sbno1	95	85.199	Labrus_bergylta
ENSRNOG00000001064	Sbno1	98	83.687	ENSLACG00000017227	SBNO1	99	91.146	Latimeria_chalumnae
ENSRNOG00000001064	Sbno1	99	88.309	ENSLOCG00000005725	sbno1	95	88.151	Lepisosteus_oculatus
ENSRNOG00000001064	Sbno1	99	97.683	ENSLAFG00000002135	SBNO1	99	96.695	Loxodonta_africana
ENSRNOG00000001064	Sbno1	99	98.396	ENSMFAG00000031429	SBNO1	99	97.270	Macaca_fascicularis
ENSRNOG00000001064	Sbno1	99	98.396	ENSMMUG00000011496	SBNO1	99	97.270	Macaca_mulatta
ENSRNOG00000001064	Sbno1	99	99.457	ENSMLEG00000033260	SBNO1	99	99.457	Mandrillus_leucophaeus
ENSRNOG00000001064	Sbno1	99	84.629	ENSMAMG00000005473	sbno1	95	84.477	Mastacembelus_armatus
ENSRNOG00000001064	Sbno1	99	95.652	ENSMGAG00000003274	SBNO1	94	97.208	Meleagris_gallopavo
ENSRNOG00000001064	Sbno1	52	99.091	ENSMAUG00000004834	-	99	99.091	Mesocricetus_auratus
ENSRNOG00000001064	Sbno1	99	96.408	ENSMICG00000006573	-	99	96.408	Microcebus_murinus
ENSRNOG00000001064	Sbno1	99	98.975	ENSMOCG00000009390	Sbno1	99	98.975	Microtus_ochrogaster
ENSRNOG00000001064	Sbno1	99	83.571	ENSMMOG00000008691	sbno1	94	83.422	Mola_mola
ENSRNOG00000001064	Sbno1	99	96.926	ENSMODG00000012470	SBNO1	99	94.042	Monodelphis_domestica
ENSRNOG00000001064	Sbno1	99	82.940	ENSMALG00000001056	sbno1	100	75.035	Monopterus_albus
ENSRNOG00000001064	Sbno1	100	98.707	MGP_CAROLIEiJ_G0027749	Sbno1	100	98.707	Mus_caroli
ENSRNOG00000001064	Sbno1	100	99.066	ENSMUSG00000038095	Sbno1	100	99.066	Mus_musculus
ENSRNOG00000001064	Sbno1	100	98.563	MGP_PahariEiJ_G0024329	Sbno1	100	98.563	Mus_pahari
ENSRNOG00000001064	Sbno1	100	98.851	MGP_SPRETEiJ_G0028747	Sbno1	100	98.851	Mus_spretus
ENSRNOG00000001064	Sbno1	99	98.217	ENSMPUG00000001658	SBNO1	99	97.701	Mustela_putorius_furo
ENSRNOG00000001064	Sbno1	99	97.504	ENSMLUG00000017159	SBNO1	99	97.126	Myotis_lucifugus
ENSRNOG00000001064	Sbno1	99	98.217	ENSNGAG00000012620	Sbno1	98	99.211	Nannospalax_galili
ENSRNOG00000001064	Sbno1	99	73.926	ENSNBRG00000019189	sbno1	99	73.947	Neolamprologus_brichardi
ENSRNOG00000001064	Sbno1	99	93.997	ENSNLEG00000001502	SBNO1	99	93.696	Nomascus_leucogenys
ENSRNOG00000001064	Sbno1	60	96.774	ENSMEUG00000008768	-	86	94.845	Notamacropus_eugenii
ENSRNOG00000001064	Sbno1	99	97.288	ENSOPRG00000011054	SBNO1	99	93.472	Ochotona_princeps
ENSRNOG00000001064	Sbno1	99	99.094	ENSODEG00000009997	SBNO1	99	99.094	Octodon_degus
ENSRNOG00000001064	Sbno1	99	83.032	ENSONIG00000015348	sbno1	95	83.032	Oreochromis_niloticus
ENSRNOG00000001064	Sbno1	98	96.045	ENSOCUG00000002441	SBNO1	95	95.478	Oryctolagus_cuniculus
ENSRNOG00000001064	Sbno1	99	82.459	ENSORLG00000001593	sbno1	95	82.310	Oryzias_latipes
ENSRNOG00000001064	Sbno1	99	82.459	ENSORLG00020015216	sbno1	95	82.310	Oryzias_latipes_hni
ENSRNOG00000001064	Sbno1	99	82.640	ENSORLG00015002726	sbno1	95	82.491	Oryzias_latipes_hsok
ENSRNOG00000001064	Sbno1	99	82.759	ENSOMEG00000019313	sbno1	99	74.667	Oryzias_melastigma
ENSRNOG00000001064	Sbno1	52	93.192	ENSOGAG00000010781	-	99	93.495	Otolemur_garnettii
ENSRNOG00000001064	Sbno1	100	97.509	ENSOARG00000004404	SBNO1	100	97.061	Ovis_aries
ENSRNOG00000001064	Sbno1	99	99.275	ENSPPAG00000024635	SBNO1	99	98.030	Pan_paniscus
ENSRNOG00000001064	Sbno1	100	98.043	ENSPPRG00000022092	SBNO1	100	97.559	Panthera_pardus
ENSRNOG00000001064	Sbno1	99	98.217	ENSPTIG00000017803	SBNO1	99	97.340	Panthera_tigris_altaica
ENSRNOG00000001064	Sbno1	99	99.457	ENSPTRG00000005597	SBNO1	99	98.109	Pan_troglodytes
ENSRNOG00000001064	Sbno1	99	99.457	ENSPANG00000011640	SBNO1	99	99.457	Papio_anubis
ENSRNOG00000001064	Sbno1	99	85.946	ENSPKIG00000001441	sbno1	95	85.946	Paramormyrops_kingsleyae
ENSRNOG00000001064	Sbno1	99	94.414	ENSPSIG00000009572	-	99	91.124	Pelodiscus_sinensis
ENSRNOG00000001064	Sbno1	97	88.386	ENSPSIG00000009256	-	100	87.403	Pelodiscus_sinensis
ENSRNOG00000001064	Sbno1	99	98.738	ENSPEMG00000016087	Sbno1	99	98.738	Peromyscus_maniculatus_bairdii
ENSRNOG00000001064	Sbno1	99	96.564	ENSPCIG00000010985	SBNO1	100	93.687	Phascolarctos_cinereus
ENSRNOG00000001064	Sbno1	99	83.303	ENSPFOG00000005069	sbno1	95	83.154	Poecilia_formosa
ENSRNOG00000001064	Sbno1	99	83.303	ENSPLAG00000015015	sbno1	95	83.154	Poecilia_latipinna
ENSRNOG00000001064	Sbno1	99	83.303	ENSPMEG00000021212	sbno1	95	83.154	Poecilia_mexicana
ENSRNOG00000001064	Sbno1	99	82.944	ENSPREG00000017746	sbno1	95	82.796	Poecilia_reticulata
ENSRNOG00000001064	Sbno1	99	99.457	ENSPPYG00000005084	SBNO1	99	96.911	Pongo_abelii
ENSRNOG00000001064	Sbno1	89	91.644	ENSPCAG00000008634	SBNO1	88	91.609	Procavia_capensis
ENSRNOG00000001064	Sbno1	99	98.217	ENSPCOG00000024277	SBNO1	99	99.089	Propithecus_coquereli
ENSRNOG00000001064	Sbno1	92	98.807	ENSPVAG00000015304	SBNO1	87	98.807	Pteropus_vampyrus
ENSRNOG00000001064	Sbno1	99	83.032	ENSPNYG00000004291	sbno1	95	83.032	Pundamilia_nyererei
ENSRNOG00000001064	Sbno1	99	87.230	ENSPNAG00000015622	sbno1	95	87.230	Pygocentrus_nattereri
ENSRNOG00000001064	Sbno1	99	99.457	ENSRROG00000034230	SBNO1	99	99.457	Rhinopithecus_roxellana
ENSRNOG00000001064	Sbno1	97	92.029	ENSSBOG00000015422	SBNO1	99	92.182	Saimiri_boliviensis_boliviensis
ENSRNOG00000001064	Sbno1	99	85.946	ENSSFOG00015019025	sbno1	95	85.946	Scleropages_formosus
ENSRNOG00000001064	Sbno1	99	83.183	ENSSMAG00000013640	sbno1	95	82.437	Scophthalmus_maximus
ENSRNOG00000001064	Sbno1	99	84.268	ENSSDUG00000023480	sbno1	95	84.116	Seriola_dumerili
ENSRNOG00000001064	Sbno1	99	84.268	ENSSLDG00000007928	sbno1	95	84.116	Seriola_lalandi_dorsalis
ENSRNOG00000001064	Sbno1	91	97.683	ENSSARG00000002594	SBNO1	89	97.731	Sorex_araneus
ENSRNOG00000001064	Sbno1	99	93.671	ENSSPUG00000012640	SBNO1	99	88.785	Sphenodon_punctatus
ENSRNOG00000001064	Sbno1	99	82.585	ENSSPAG00000016244	sbno1	95	82.437	Stegastes_partitus
ENSRNOG00000001064	Sbno1	99	98.923	ENSSSCG00000009776	SBNO1	99	97.701	Sus_scrofa
ENSRNOG00000001064	Sbno1	99	96.014	ENSTGUG00000005380	SBNO1	95	96.036	Taeniopygia_guttata
ENSRNOG00000001064	Sbno1	99	84.087	ENSTRUG00000018490	sbno1	95	84.087	Takifugu_rubripes
ENSRNOG00000001064	Sbno1	63	70.384	ENSTNIG00000013506	sbno1	99	70.859	Tetraodon_nigroviridis
ENSRNOG00000001064	Sbno1	99	98.039	ENSUAMG00000019671	SBNO1	99	97.557	Ursus_americanus
ENSRNOG00000001064	Sbno1	99	98.039	ENSUMAG00000004002	SBNO1	99	97.557	Ursus_maritimus
ENSRNOG00000001064	Sbno1	99	91.102	ENSVPAG00000007024	SBNO1	95	93.333	Vicugna_pacos
ENSRNOG00000001064	Sbno1	99	98.039	ENSVVUG00000027807	SBNO1	99	97.342	Vulpes_vulpes
ENSRNOG00000001064	Sbno1	100	91.119	ENSXETG00000031930	SBNO1	95	91.119	Xenopus_tropicalis
ENSRNOG00000001064	Sbno1	97	75.386	ENSXCOG00000011607	sbno1	91	83.038	Xiphophorus_couchianus
ENSRNOG00000001064	Sbno1	99	82.944	ENSXMAG00000002140	sbno1	95	82.796	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0008150	biological_process	-	ND	Process