EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001073 (Gene tree)
Gene ID: 498179
Gene Symbol: RGD1563482
Alias: LOC498179|MGC187978
Full Name: similar to hypothetical protein FLJ38663
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 22598 bases
Position: chr12:37677019-37699616
Accession: 1563482
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001421	RF-1	PF00472.20	4.2e-21	1	1
ENSRNOP00000034075	RF-1	PF00472.20	4.2e-21	1	1
ENSRNOP00000071132	RF-1	PF00472.20	4.2e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000077803	-	3052	-	ENSRNOP00000071132	181 (aa)	-	F1LWN5
ENSRNOT00000001421	-	546	XM_003751183	ENSRNOP00000001421	181 (aa)	XP_003751231	F1LWN5
ENSRNOT00000030251	-	546	-	ENSRNOP00000034075	181 (aa)	-	F1LWN5

Gene Model

Click here to download ENSRNOG00000001073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001073's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001073	RGD1563482	80	77.241	ENSG00000130921	C12orf65	95	80.153	Homo_sapiens
ENSRNOG00000001073	RGD1563482	73	60.150	ENSAPOG00000000995	si:ch211-275j6.5	60	66.667	Acanthochromis_polyacanthus
ENSRNOG00000001073	RGD1563482	71	71.094	ENSAMEG00000015144	C12orf65	77	71.756	Ailuropoda_melanoleuca
ENSRNOG00000001073	RGD1563482	72	60.606	ENSACIG00000001644	si:ch211-275j6.5	61	67.347	Amphilophus_citrinellus
ENSRNOG00000001073	RGD1563482	74	60.448	ENSAOCG00000005589	si:ch211-275j6.5	63	67.677	Amphiprion_ocellaris
ENSRNOG00000001073	RGD1563482	74	60.448	ENSAPEG00000024618	si:ch211-275j6.5	63	66.019	Amphiprion_percula
ENSRNOG00000001073	RGD1563482	65	73.504	ENSAPLG00000016073	C12orf65	73	80.682	Anas_platyrhynchos
ENSRNOG00000001073	RGD1563482	88	60.625	ENSACAG00000015561	C12orf65	66	59.542	Anolis_carolinensis
ENSRNOG00000001073	RGD1563482	71	78.125	ENSANAG00000022881	C12orf65	79	78.626	Aotus_nancymaae
ENSRNOG00000001073	RGD1563482	71	61.240	ENSACLG00000023906	si:ch211-275j6.5	54	71.591	Astatotilapia_calliptera
ENSRNOG00000001073	RGD1563482	71	56.489	ENSAMXG00000031765	si:ch211-275j6.5	77	57.600	Astyanax_mexicanus
ENSRNOG00000001073	RGD1563482	91	75.758	ENSBTAG00000020503	C17H12orf65	76	76.336	Bos_taurus
ENSRNOG00000001073	RGD1563482	71	77.344	ENSCJAG00000016579	C12orf65	80	77.863	Callithrix_jacchus
ENSRNOG00000001073	RGD1563482	91	71.515	ENSCAFG00000007512	C26H12orf65	55	72.519	Canis_familiaris
ENSRNOG00000001073	RGD1563482	91	71.515	ENSCAFG00020016169	C12orf65	79	72.519	Canis_lupus_dingo
ENSRNOG00000001073	RGD1563482	91	75.610	ENSCHIG00000022229	C12orf65	74	76.336	Capra_hircus
ENSRNOG00000001073	RGD1563482	97	75.000	ENSCAPG00000014691	C12orf65	96	75.000	Cavia_aperea
ENSRNOG00000001073	RGD1563482	97	75.568	ENSCPOG00000007583	C12orf65	96	75.568	Cavia_porcellus
ENSRNOG00000001073	RGD1563482	80	76.389	ENSCATG00000040685	C12orf65	76	80.800	Cercocebus_atys
ENSRNOG00000001073	RGD1563482	72	80.916	ENSCLAG00000014329	C12orf65	71	80.916	Chinchilla_lanigera
ENSRNOG00000001073	RGD1563482	80	76.389	ENSCSAG00000002068	C12orf65	77	79.231	Chlorocebus_sabaeus
ENSRNOG00000001073	RGD1563482	82	61.745	ENSCPBG00000025970	C12orf65	73	62.185	Chrysemys_picta_bellii
ENSRNOG00000001073	RGD1563482	100	86.740	ENSCGRG00001013424	2810006K23Rik	98	86.740	Cricetulus_griseus_chok1gshd
ENSRNOG00000001073	RGD1563482	100	86.740	ENSCGRG00000003037	2810006K23Rik	98	86.740	Cricetulus_griseus_crigri
ENSRNOG00000001073	RGD1563482	71	58.462	ENSCSEG00000014536	si:ch211-275j6.5	63	61.682	Cynoglossus_semilaevis
ENSRNOG00000001073	RGD1563482	81	57.143	ENSCVAG00000023000	si:ch211-275j6.5	59	63.107	Cyprinodon_variegatus
ENSRNOG00000001073	RGD1563482	69	56.800	ENSDARG00000097803	si:ch211-275j6.5	68	67.021	Danio_rerio
ENSRNOG00000001073	RGD1563482	73	66.917	ENSDNOG00000034728	C12orf65	79	67.176	Dasypus_novemcinctus
ENSRNOG00000001073	RGD1563482	96	71.839	ENSDORG00000026069	2810006K23Rik	100	71.839	Dipodomys_ordii
ENSRNOG00000001073	RGD1563482	67	45.455	FBgn0050100	CG30100	64	51.613	Drosophila_melanogaster
ENSRNOG00000001073	RGD1563482	50	85.714	ENSETEG00000005627	C12orf65	63	82.000	Echinops_telfairi
ENSRNOG00000001073	RGD1563482	71	78.125	ENSEASG00005012587	C12orf65	79	78.626	Equus_asinus_asinus
ENSRNOG00000001073	RGD1563482	71	78.125	ENSECAG00000001057	C8H12orf65	79	78.626	Equus_caballus
ENSRNOG00000001073	RGD1563482	71	74.419	ENSEEUG00000007231	C12orf65	79	75.000	Erinaceus_europaeus
ENSRNOG00000001073	RGD1563482	79	56.849	ENSELUG00000015178	lg13h12orf65	72	58.333	Esox_lucius
ENSRNOG00000001073	RGD1563482	71	76.744	ENSFCAG00000015328	C12orf65	79	77.273	Felis_catus
ENSRNOG00000001073	RGD1563482	53	73.958	ENSFALG00000009261	C12orf65	55	73.864	Ficedula_albicollis
ENSRNOG00000001073	RGD1563482	73	60.150	ENSFHEG00000017567	si:ch211-275j6.5	59	65.657	Fundulus_heteroclitus
ENSRNOG00000001073	RGD1563482	65	65.254	ENSGMOG00000012139	si:ch211-275j6.5	60	70.787	Gadus_morhua
ENSRNOG00000001073	RGD1563482	74	59.722	ENSGALG00000029390	C15H12ORF65	71	61.207	Gallus_gallus
ENSRNOG00000001073	RGD1563482	78	57.241	ENSGACG00000008255	si:ch211-275j6.5	67	63.636	Gasterosteus_aculeatus
ENSRNOG00000001073	RGD1563482	64	64.348	ENSGAGG00000000823	C12orf65	81	64.706	Gopherus_agassizii
ENSRNOG00000001073	RGD1563482	80	77.241	ENSGGOG00000012850	C12orf65	79	80.153	Gorilla_gorilla
ENSRNOG00000001073	RGD1563482	71	61.240	ENSHBUG00000007273	si:ch211-275j6.5	54	71.591	Haplochromis_burtoni
ENSRNOG00000001073	RGD1563482	70	78.740	ENSHGLG00000010966	C12orf65	70	77.099	Heterocephalus_glaber_female
ENSRNOG00000001073	RGD1563482	70	78.740	ENSHGLG00100018631	C12orf65	70	77.099	Heterocephalus_glaber_male
ENSRNOG00000001073	RGD1563482	71	65.625	ENSHCOG00000019848	si:ch211-275j6.5	55	73.404	Hippocampus_comes
ENSRNOG00000001073	RGD1563482	71	61.719	ENSIPUG00000020793	si:ch211-275j6.5	60	65.306	Ictalurus_punctatus
ENSRNOG00000001073	RGD1563482	93	76.190	ENSSTOG00000016463	C12orf65	75	78.626	Ictidomys_tridecemlineatus
ENSRNOG00000001073	RGD1563482	96	72.414	ENSJJAG00000023360	2810006K23Rik	94	64.407	Jaculus_jaculus
ENSRNOG00000001073	RGD1563482	63	66.667	ENSKMAG00000018733	si:ch211-275j6.5	52	75.000	Kryptolebias_marmoratus
ENSRNOG00000001073	RGD1563482	69	68.548	ENSLACG00000017355	C12orf65	58	73.684	Latimeria_chalumnae
ENSRNOG00000001073	RGD1563482	66	68.067	ENSLOCG00000005702	si:ch211-275j6.5	77	69.892	Lepisosteus_oculatus
ENSRNOG00000001073	RGD1563482	91	68.293	ENSLAFG00000002134	C12orf65	79	68.702	Loxodonta_africana
ENSRNOG00000001073	RGD1563482	80	76.389	ENSMMUG00000031495	C12orf65	76	80.800	Macaca_mulatta
ENSRNOG00000001073	RGD1563482	70	78.740	ENSMNEG00000044673	C12orf65	76	80.800	Macaca_nemestrina
ENSRNOG00000001073	RGD1563482	80	76.389	ENSMLEG00000044309	C12orf65	76	80.800	Mandrillus_leucophaeus
ENSRNOG00000001073	RGD1563482	73	62.500	ENSMAMG00000017366	si:ch211-275j6.5	59	69.608	Mastacembelus_armatus
ENSRNOG00000001073	RGD1563482	71	61.240	ENSMZEG00005000938	si:ch211-275j6.5	54	71.591	Maylandia_zebra
ENSRNOG00000001073	RGD1563482	74	62.687	ENSMGAG00000003354	C12orf65	80	59.398	Meleagris_gallopavo
ENSRNOG00000001073	RGD1563482	67	87.705	ENSMAUG00000010304	2810006K23Rik	97	87.705	Mesocricetus_auratus
ENSRNOG00000001073	RGD1563482	70	77.165	ENSMICG00000037138	C12orf65	79	77.099	Microcebus_murinus
ENSRNOG00000001073	RGD1563482	99	85.000	ENSMOCG00000017477	2810006K23Rik	98	84.530	Microtus_ochrogaster
ENSRNOG00000001073	RGD1563482	78	57.931	ENSMMOG00000017134	si:ch211-275j6.5	52	71.429	Mola_mola
ENSRNOG00000001073	RGD1563482	87	70.886	ENSMODG00000012450	C12orf65	75	71.318	Monodelphis_domestica
ENSRNOG00000001073	RGD1563482	68	64.228	ENSMALG00000012291	si:ch211-275j6.5	59	69.000	Monopterus_albus
ENSRNOG00000001073	RGD1563482	99	89.503	MGP_CAROLIEiJ_G0027747	2810006K23Rik	98	89.503	Mus_caroli
ENSRNOG00000001073	RGD1563482	99	90.556	ENSMUSG00000047635	2810006K23Rik	98	90.556	Mus_musculus
ENSRNOG00000001073	RGD1563482	99	91.111	MGP_SPRETEiJ_G0028745	2810006K23Rik	98	91.111	Mus_spretus
ENSRNOG00000001073	RGD1563482	91	72.727	ENSMPUG00000001679	C12orf65	75	70.992	Mustela_putorius_furo
ENSRNOG00000001073	RGD1563482	91	71.515	ENSMLUG00000007001	C12orf65	76	74.603	Myotis_lucifugus
ENSRNOG00000001073	RGD1563482	100	71.823	ENSNGAG00000010625	2810006K23Rik	98	71.823	Nannospalax_galili
ENSRNOG00000001073	RGD1563482	69	62.097	ENSNBRG00000008082	si:ch211-275j6.5	54	71.591	Neolamprologus_brichardi
ENSRNOG00000001073	RGD1563482	80	77.931	ENSNLEG00000001470	C12orf65	80	80.303	Nomascus_leucogenys
ENSRNOG00000001073	RGD1563482	87	68.790	ENSMEUG00000009430	C12orf65	84	67.424	Notamacropus_eugenii
ENSRNOG00000001073	RGD1563482	86	67.742	ENSOPRG00000011029	C12orf65	78	68.800	Ochotona_princeps
ENSRNOG00000001073	RGD1563482	91	76.829	ENSODEG00000011382	-	75	79.389	Octodon_degus
ENSRNOG00000001073	RGD1563482	80	56.944	ENSONIG00000013298	si:ch211-275j6.5	53	71.591	Oreochromis_niloticus
ENSRNOG00000001073	RGD1563482	90	66.258	ENSOANG00000012866	C12orf65	72	68.800	Ornithorhynchus_anatinus
ENSRNOG00000001073	RGD1563482	77	71.429	ENSOCUG00000011888	C12orf65	90	74.615	Oryctolagus_cuniculus
ENSRNOG00000001073	RGD1563482	69	60.484	ENSORLG00000006153	si:ch211-275j6.5	55	65.957	Oryzias_latipes
ENSRNOG00000001073	RGD1563482	71	59.375	ENSORLG00020017188	si:ch211-275j6.5	55	65.957	Oryzias_latipes_hni
ENSRNOG00000001073	RGD1563482	69	60.484	ENSORLG00015005780	c9h12orf65	55	65.957	Oryzias_latipes_hsok
ENSRNOG00000001073	RGD1563482	71	60.156	ENSOMEG00000001663	si:ch211-275j6.5	55	67.021	Oryzias_melastigma
ENSRNOG00000001073	RGD1563482	70	72.441	ENSOGAG00000010778	C12orf65	80	72.519	Otolemur_garnettii
ENSRNOG00000001073	RGD1563482	91	75.610	ENSOARG00000005214	C12orf65	78	76.336	Ovis_aries
ENSRNOG00000001073	RGD1563482	80	77.241	ENSPPAG00000029654	C12orf65	79	80.153	Pan_paniscus
ENSRNOG00000001073	RGD1563482	91	75.904	ENSPPRG00000024772	C12orf65	79	76.515	Panthera_pardus
ENSRNOG00000001073	RGD1563482	91	75.904	ENSPTIG00000011744	C12orf65	79	76.515	Panthera_tigris_altaica
ENSRNOG00000001073	RGD1563482	80	77.241	ENSPTRG00000005595	C12H12orf65	79	80.153	Pan_troglodytes
ENSRNOG00000001073	RGD1563482	80	76.389	ENSPANG00000015388	C12orf65	78	79.231	Papio_anubis
ENSRNOG00000001073	RGD1563482	70	63.704	ENSPKIG00000001571	si:ch211-275j6.5	65	62.385	Paramormyrops_kingsleyae
ENSRNOG00000001073	RGD1563482	72	67.176	ENSPSIG00000013010	C12orf65	56	71.287	Pelodiscus_sinensis
ENSRNOG00000001073	RGD1563482	86	56.129	ENSPMGG00000018342	si:ch211-275j6.5	66	62.500	Periophthalmus_magnuspinnatus
ENSRNOG00000001073	RGD1563482	57	57.692	ENSPMAG00000000514	si:ch211-275j6.5	70	66.667	Petromyzon_marinus
ENSRNOG00000001073	RGD1563482	87	68.354	ENSPCIG00000010996	C12orf65	76	67.176	Phascolarctos_cinereus
ENSRNOG00000001073	RGD1563482	71	62.791	ENSPLAG00000001661	si:ch211-275j6.5	59	65.657	Poecilia_latipinna
ENSRNOG00000001073	RGD1563482	71	62.791	ENSPMEG00000009201	si:ch211-275j6.5	59	65.657	Poecilia_mexicana
ENSRNOG00000001073	RGD1563482	71	62.791	ENSPMEG00000018566	si:ch211-275j6.5	59	65.657	Poecilia_mexicana
ENSRNOG00000001073	RGD1563482	62	69.027	ENSPREG00000021268	si:ch211-275j6.5	57	65.979	Poecilia_reticulata
ENSRNOG00000001073	RGD1563482	80	77.241	ENSPPYG00000005082	C12orf65	79	80.153	Pongo_abelii
ENSRNOG00000001073	RGD1563482	68	71.545	ENSPCAG00000016193	C12orf65	77	70.866	Procavia_capensis
ENSRNOG00000001073	RGD1563482	70	77.953	ENSPCOG00000021574	C12orf65	73	77.863	Propithecus_coquereli
ENSRNOG00000001073	RGD1563482	91	73.333	ENSPVAG00000015301	C12orf65	78	74.046	Pteropus_vampyrus
ENSRNOG00000001073	RGD1563482	71	61.240	ENSPNYG00000014456	si:ch211-275j6.5	54	71.591	Pundamilia_nyererei
ENSRNOG00000001073	RGD1563482	66	63.333	ENSPNAG00000019769	si:ch211-275j6.5	55	65.591	Pygocentrus_nattereri
ENSRNOG00000001073	RGD1563482	80	75.172	ENSRBIG00000040789	C12orf65	79	77.863	Rhinopithecus_bieti
ENSRNOG00000001073	RGD1563482	80	74.483	ENSRROG00000031384	C12orf65	78	77.099	Rhinopithecus_roxellana
ENSRNOG00000001073	RGD1563482	71	78.906	ENSSBOG00000026629	C12orf65	77	79.389	Saimiri_boliviensis_boliviensis
ENSRNOG00000001073	RGD1563482	96	66.092	ENSSHAG00000014988	C12orf65	71	68.702	Sarcophilus_harrisii
ENSRNOG00000001073	RGD1563482	77	62.500	ENSSFOG00015019122	si:ch211-275j6.5	67	61.864	Scleropages_formosus
ENSRNOG00000001073	RGD1563482	68	65.041	ENSSMAG00000016770	si:ch211-275j6.5	57	68.367	Scophthalmus_maximus
ENSRNOG00000001073	RGD1563482	70	63.492	ENSSDUG00000020401	si:ch211-275j6.5	59	66.667	Seriola_dumerili
ENSRNOG00000001073	RGD1563482	80	59.060	ENSSLDG00000017638	si:ch211-275j6.5	53	70.787	Seriola_lalandi_dorsalis
ENSRNOG00000001073	RGD1563482	90	56.442	ENSSPUG00000012613	C12orf65	74	57.252	Sphenodon_punctatus
ENSRNOG00000001073	RGD1563482	66	63.866	ENSSPAG00000023476	si:ch211-275j6.5	53	69.663	Stegastes_partitus
ENSRNOG00000001073	RGD1563482	81	73.469	ENSSSCG00000009774	C12orf65	88	77.692	Sus_scrofa
ENSRNOG00000001073	RGD1563482	66	65.000	ENSTGUG00000005440	C12orf65	71	68.132	Taeniopygia_guttata
ENSRNOG00000001073	RGD1563482	80	57.241	ENSTNIG00000015832	si:ch211-275j6.5	62	61.818	Tetraodon_nigroviridis
ENSRNOG00000001073	RGD1563482	71	75.781	ENSTBEG00000012500	C12orf65	79	76.336	Tupaia_belangeri
ENSRNOG00000001073	RGD1563482	91	72.727	ENSTTRG00000015880	C12orf65	79	78.626	Tursiops_truncatus
ENSRNOG00000001073	RGD1563482	71	74.219	ENSUAMG00000019669	C12orf65	79	74.809	Ursus_americanus
ENSRNOG00000001073	RGD1563482	71	74.219	ENSUMAG00000004025	C12orf65	79	74.809	Ursus_maritimus
ENSRNOG00000001073	RGD1563482	91	70.909	ENSVVUG00000027811	C12orf65	79	71.756	Vulpes_vulpes
ENSRNOG00000001073	RGD1563482	71	61.240	ENSXCOG00000000975	si:ch211-275j6.5	59	65.657	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003747	translation release factor activity	-	IEA	Function
GO:0005762	mitochondrial large ribosomal subunit	21873635.	IBA	Component
GO:0006415	translational termination	-	IEA	Process