EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000001156 (Gene tree)
Gene ID
259272
Gene Symbol
Msi1
Alias
Msi1h
Full Name
musashi RNA-binding protein 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
25506 bases
Position
chr12:46895447-46920952
Accession
628778
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000001532RRM_1PF00076.229.9e-2111
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000001532-2894-ENSRNOP00000001532311 (aa)-F1LRH1
Gene Model
Click here to download ENSRNOG00000001156's gene model file
Pathways
Pathway IDPathway NameSource
rno03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001156's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000001156Msi16030.000ENSRNOG00000006420Rbm385531.333
ENSRNOG00000001156Msi15142.308ENSRNOG00000031387Dazap15142.308
ENSRNOG00000001156Msi110069.132ENSRNOG00000025338Msi210070.740
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000001156Msi110099.678ENSG00000135097MSI19499.678Homo_sapiens
ENSRNOG00000001156Msi110085.531ENSAPOG00000003191MSI19485.531Acanthochromis_polyacanthus
ENSRNOG00000001156Msi110085.852ENSAPOG00000023458-9485.852Acanthochromis_polyacanthus
ENSRNOG00000001156Msi110080.165ENSAMEG00000013302MSI110080.165Ailuropoda_melanoleuca
ENSRNOG00000001156Msi19681.879ENSACIG00000017754-7881.879Amphilophus_citrinellus
ENSRNOG00000001156Msi110085.531ENSAOCG00000003804MSI19485.531Amphiprion_ocellaris
ENSRNOG00000001156Msi110076.527ENSAOCG00000009031-9576.849Amphiprion_ocellaris
ENSRNOG00000001156Msi110085.531ENSAPEG00000003245MSI19485.531Amphiprion_percula
ENSRNOG00000001156Msi110085.852ENSAPEG00000006857-7985.852Amphiprion_percula
ENSRNOG00000001156Msi110085.531ENSATEG00000017059MSI19585.531Anabas_testudineus
ENSRNOG00000001156Msi110082.372ENSATEG00000023779-9382.372Anabas_testudineus
ENSRNOG00000001156Msi110096.463ENSACAG00000002762MSI19496.463Anolis_carolinensis
ENSRNOG00000001156Msi110099.678ENSANAG00000027151MSI19499.678Aotus_nancymaae
ENSRNOG00000001156Msi17995.951ENSANAG00000027901-8695.951Aotus_nancymaae
ENSRNOG00000001156Msi110084.887ENSACLG00000011230MSI19484.887Astatotilapia_calliptera
ENSRNOG00000001156Msi110085.209ENSACLG00000000117-10085.209Astatotilapia_calliptera
ENSRNOG00000001156Msi110084.566ENSAMXG00000038960msi17684.566Astyanax_mexicanus
ENSRNOG00000001156Msi110099.678ENSBTAG00000009800MSI110099.678Bos_taurus
ENSRNOG00000001156Msi110099.678ENSCJAG00000008578MSI19499.678Callithrix_jacchus
ENSRNOG00000001156Msi110099.357ENSCAFG00000010283MSI19499.357Canis_familiaris
ENSRNOG00000001156Msi110099.678ENSCAFG00020020585MSI110099.678Canis_lupus_dingo
ENSRNOG00000001156Msi110093.396ENSCHIG00000024304MSI19893.396Capra_hircus
ENSRNOG00000001156Msi110099.678ENSTSYG00000033949MSI19599.678Carlito_syrichta
ENSRNOG00000001156Msi19689.457ENSCAPG00000003919MSI18989.457Cavia_aperea
ENSRNOG00000001156Msi110099.678ENSCPOG00000012361MSI110099.678Cavia_porcellus
ENSRNOG00000001156Msi110099.678ENSCCAG00000035567MSI19499.678Cebus_capucinus
ENSRNOG00000001156Msi110099.678ENSCATG00000030019MSI19499.678Cercocebus_atys
ENSRNOG00000001156Msi110099.678ENSCLAG00000011329MSI110099.678Chinchilla_lanigera
ENSRNOG00000001156Msi17195.133ENSCSAG00000002265MSI18995.133Chlorocebus_sabaeus
ENSRNOG00000001156Msi110095.820ENSCPBG00000011349MSI19495.820Chrysemys_picta_bellii
ENSRNOG00000001156Msi110099.678ENSCANG00000040651MSI19999.678Colobus_angolensis_palliatus
ENSRNOG00000001156Msi110099.678ENSCGRG00001018883Msi19499.678Cricetulus_griseus_chok1gshd
ENSRNOG00000001156Msi110099.678ENSCGRG00000002191Msi17399.678Cricetulus_griseus_crigri
ENSRNOG00000001156Msi110085.209ENSCSEG00000005834-9485.209Cynoglossus_semilaevis
ENSRNOG00000001156Msi110077.814ENSCSEG00000011032MSI110077.814Cynoglossus_semilaevis
ENSRNOG00000001156Msi110084.244ENSCSEG00000008352-9484.244Cynoglossus_semilaevis
ENSRNOG00000001156Msi110085.852ENSCVAG00000009100MSI19485.852Cyprinodon_variegatus
ENSRNOG00000001156Msi17468.398ENSCVAG00000017463-8968.398Cyprinodon_variegatus
ENSRNOG00000001156Msi17482.096ENSDARG00000102015CABZ01037298.18982.096Danio_rerio
ENSRNOG00000001156Msi110081.994ENSDARG00000010710msi110084.581Danio_rerio
ENSRNOG00000001156Msi110089.068ENSDNOG00000005713MSI19189.068Dasypus_novemcinctus
ENSRNOG00000001156Msi110099.678ENSDORG00000005610Msi19399.678Dipodomys_ordii
ENSRNOG00000001156Msi110095.177ENSETEG00000004756MSI19995.177Echinops_telfairi
ENSRNOG00000001156Msi110099.678ENSEASG00005004736MSI19499.678Equus_asinus_asinus
ENSRNOG00000001156Msi110099.678ENSECAG00000017526MSI19499.678Equus_caballus
ENSRNOG00000001156Msi110080.060ENSELUG00000023219MSI19280.060Esox_lucius
ENSRNOG00000001156Msi110080.386ENSELUG00000023280-10080.064Esox_lucius
ENSRNOG00000001156Msi110099.678ENSFCAG00000011007MSI19499.678Felis_catus
ENSRNOG00000001156Msi110095.498ENSFALG00000007574MSI110095.498Ficedula_albicollis
ENSRNOG00000001156Msi110099.357ENSFDAG00000019586MSI19999.357Fukomys_damarensis
ENSRNOG00000001156Msi110086.174ENSFHEG00000022446MSI19486.174Fundulus_heteroclitus
ENSRNOG00000001156Msi110085.209ENSFHEG00000003560-9485.209Fundulus_heteroclitus
ENSRNOG00000001156Msi110083.280ENSGMOG00000001006MSI19482.958Gadus_morhua
ENSRNOG00000001156Msi110076.527ENSGMOG00000017838-8576.527Gadus_morhua
ENSRNOG00000001156Msi19985.588ENSGALG00000007227MSI19385.588Gallus_gallus
ENSRNOG00000001156Msi110067.949ENSGAFG00000005860-8967.949Gambusia_affinis
ENSRNOG00000001156Msi110084.566ENSGAFG00000021522MSI19484.566Gambusia_affinis
ENSRNOG00000001156Msi110084.566ENSGACG00000012679MSI19484.566Gasterosteus_aculeatus
ENSRNOG00000001156Msi110081.672ENSGACG00000008674-9481.672Gasterosteus_aculeatus
ENSRNOG00000001156Msi110095.820ENSGAGG00000016037MSI19495.820Gopherus_agassizii
ENSRNOG00000001156Msi110099.678ENSGGOG00000010328MSI19999.678Gorilla_gorilla
ENSRNOG00000001156Msi110084.887ENSHBUG00000021921MSI19484.887Haplochromis_burtoni
ENSRNOG00000001156Msi110085.209ENSHBUG00000011841-9485.209Haplochromis_burtoni
ENSRNOG00000001156Msi110099.357ENSHGLG00000012782MSI19499.357Heterocephalus_glaber_female
ENSRNOG00000001156Msi110099.357ENSHGLG00100016848MSI19999.357Heterocephalus_glaber_male
ENSRNOG00000001156Msi110084.244ENSHCOG00000012067-8984.244Hippocampus_comes
ENSRNOG00000001156Msi110080.386ENSHCOG00000012019MSI110080.386Hippocampus_comes
ENSRNOG00000001156Msi110083.923ENSIPUG00000001976msi19980.064Ictalurus_punctatus
ENSRNOG00000001156Msi110099.678ENSSTOG00000009799MSI110099.678Ictidomys_tridecemlineatus
ENSRNOG00000001156Msi110099.678ENSJJAG00000010463Msi19499.678Jaculus_jaculus
ENSRNOG00000001156Msi110081.672ENSJJAG00000010643-9481.350Jaculus_jaculus
ENSRNOG00000001156Msi110082.315ENSKMAG00000019877-10082.315Kryptolebias_marmoratus
ENSRNOG00000001156Msi110084.887ENSKMAG00000011251MSI19484.887Kryptolebias_marmoratus
ENSRNOG00000001156Msi110085.209ENSLBEG00000008789MSI19485.209Labrus_bergylta
ENSRNOG00000001156Msi110085.531ENSLBEG00000001375-9485.531Labrus_bergylta
ENSRNOG00000001156Msi110087.460ENSLACG00000018287MSI110087.460Latimeria_chalumnae
ENSRNOG00000001156Msi110088.818ENSLAFG00000009412MSI110088.818Loxodonta_africana
ENSRNOG00000001156Msi110099.678ENSMFAG00000001798MSI110099.678Macaca_fascicularis
ENSRNOG00000001156Msi110099.678ENSMMUG00000031527MSI19699.678Macaca_mulatta
ENSRNOG00000001156Msi110099.678ENSMNEG00000040034MSI19499.678Macaca_nemestrina
ENSRNOG00000001156Msi110099.678ENSMLEG00000003921MSI19999.678Mandrillus_leucophaeus
ENSRNOG00000001156Msi110084.566ENSMAMG00000002279MSI19484.566Mastacembelus_armatus
ENSRNOG00000001156Msi110085.209ENSMAMG00000018426-9485.209Mastacembelus_armatus
ENSRNOG00000001156Msi110085.209ENSMZEG00005000340-9485.209Maylandia_zebra
ENSRNOG00000001156Msi110084.887ENSMZEG00005026892MSI19484.887Maylandia_zebra
ENSRNOG00000001156Msi15498.225ENSMGAG00000016518-10098.225Meleagris_gallopavo
ENSRNOG00000001156Msi16899.528ENSMAUG00000016820Msi110099.528Mesocricetus_auratus
ENSRNOG00000001156Msi110099.678ENSMICG00000033181MSI19499.678Microcebus_murinus
ENSRNOG00000001156Msi110099.357ENSMOCG00000002286Msi19499.357Microtus_ochrogaster
ENSRNOG00000001156Msi110075.241ENSMMOG00000010492MSI19675.241Mola_mola
ENSRNOG00000001156Msi110082.637ENSMMOG00000012265-9982.637Mola_mola
ENSRNOG00000001156Msi110065.605ENSMODG00000003189-10065.605Monodelphis_domestica
ENSRNOG00000001156Msi110084.566ENSMALG00000001426-10084.566Monopterus_albus
ENSRNOG00000001156Msi110085.209ENSMALG00000017889MSI19485.209Monopterus_albus
ENSRNOG00000001156Msi110099.678MGP_CAROLIEiJ_G0027626Msi19499.678Mus_caroli
ENSRNOG00000001156Msi110099.678ENSMUSG00000054256Msi19996.141Mus_musculus
ENSRNOG00000001156Msi110099.357MGP_PahariEiJ_G0024206Msi19499.357Mus_pahari
ENSRNOG00000001156Msi110099.678MGP_SPRETEiJ_G0028624Msi19499.678Mus_spretus
ENSRNOG00000001156Msi110099.678ENSMPUG00000003168MSI110099.678Mustela_putorius_furo
ENSRNOG00000001156Msi110089.308ENSMLUG00000010313MSI110089.308Myotis_lucifugus
ENSRNOG00000001156Msi110099.678ENSNGAG00000014508Msi19399.678Nannospalax_galili
ENSRNOG00000001156Msi110085.209ENSNBRG00000000841-9485.209Neolamprologus_brichardi
ENSRNOG00000001156Msi18277.821ENSNBRG00000018012MSI19977.821Neolamprologus_brichardi
ENSRNOG00000001156Msi110088.746ENSNLEG00000015636MSI19488.746Nomascus_leucogenys
ENSRNOG00000001156Msi110076.206ENSMEUG00000015759MSI19576.206Notamacropus_eugenii
ENSRNOG00000001156Msi19691.275ENSOPRG00000016879MSI19991.275Ochotona_princeps
ENSRNOG00000001156Msi110099.678ENSODEG00000006328MSI19999.678Octodon_degus
ENSRNOG00000001156Msi110085.209ENSONIG00000019452-9485.209Oreochromis_niloticus
ENSRNOG00000001156Msi110085.209ENSONIG00000011182MSI19485.209Oreochromis_niloticus
ENSRNOG00000001156Msi110099.357ENSOCUG00000027716MSI110099.357Oryctolagus_cuniculus
ENSRNOG00000001156Msi110084.887ENSORLG00000029593MSI19484.887Oryzias_latipes
ENSRNOG00000001156Msi110085.852ENSORLG00000019978-9485.852Oryzias_latipes
ENSRNOG00000001156Msi110084.887ENSORLG00020008266MSI19981.672Oryzias_latipes_hni
ENSRNOG00000001156Msi110085.852ENSORLG00020001208-6785.852Oryzias_latipes_hni
ENSRNOG00000001156Msi110084.887ENSORLG00015003916MSI19981.672Oryzias_latipes_hsok
ENSRNOG00000001156Msi110085.852ENSORLG00015013672-7181.994Oryzias_latipes_hsok
ENSRNOG00000001156Msi110085.852ENSOMEG00000017536MSI110082.637Oryzias_melastigma
ENSRNOG00000001156Msi110085.852ENSOMEG00000002272-9785.852Oryzias_melastigma
ENSRNOG00000001156Msi110098.726ENSOGAG00000003847MSI19898.726Otolemur_garnettii
ENSRNOG00000001156Msi110095.513ENSOARG00000012097MSI110095.513Ovis_aries
ENSRNOG00000001156Msi110099.678ENSPPAG00000043073MSI19999.678Pan_paniscus
ENSRNOG00000001156Msi110099.678ENSPPRG00000000370MSI19499.678Panthera_pardus
ENSRNOG00000001156Msi110099.678ENSPTIG00000008913MSI110099.678Panthera_tigris_altaica
ENSRNOG00000001156Msi110099.678ENSPTRG00000005531MSI19499.678Pan_troglodytes
ENSRNOG00000001156Msi110099.678ENSPANG00000006335MSI19499.678Papio_anubis
ENSRNOG00000001156Msi110086.174ENSPKIG00000016497MSI19486.174Paramormyrops_kingsleyae
ENSRNOG00000001156Msi110085.531ENSPKIG00000023575-9485.531Paramormyrops_kingsleyae
ENSRNOG00000001156Msi17492.576ENSPSIG00000009621-10092.576Pelodiscus_sinensis
ENSRNOG00000001156Msi110091.318ENSPSIG00000011608-9391.318Pelodiscus_sinensis
ENSRNOG00000001156Msi19681.208ENSPMGG00000000514MSI19781.208Periophthalmus_magnuspinnatus
ENSRNOG00000001156Msi110069.010ENSPMGG00000007743-8969.427Periophthalmus_magnuspinnatus
ENSRNOG00000001156Msi110099.357ENSPEMG00000010491Msi19399.357Peromyscus_maniculatus_bairdii
ENSRNOG00000001156Msi110085.209ENSPFOG00000008319-8185.209Poecilia_formosa
ENSRNOG00000001156Msi110085.852ENSPFOG00000013113MSI19485.852Poecilia_formosa
ENSRNOG00000001156Msi110085.209ENSPLAG00000012431-9185.209Poecilia_latipinna
ENSRNOG00000001156Msi110085.852ENSPLAG00000014025-9485.852Poecilia_latipinna
ENSRNOG00000001156Msi110084.566ENSPMEG00000007025-9376.527Poecilia_mexicana
ENSRNOG00000001156Msi110085.852ENSPMEG00000012796MSI19485.852Poecilia_mexicana
ENSRNOG00000001156Msi17278.571ENSPREG00000014574-10078.571Poecilia_reticulata
ENSRNOG00000001156Msi110081.994ENSPREG00000021416-9481.994Poecilia_reticulata
ENSRNOG00000001156Msi110099.678ENSPPYG00000005027MSI19499.678Pongo_abelii
ENSRNOG00000001156Msi18876.557ENSPCAG00000002300MSI110076.557Procavia_capensis
ENSRNOG00000001156Msi110099.678ENSPCOG00000017341MSI19499.678Propithecus_coquereli
ENSRNOG00000001156Msi110081.672ENSPVAG00000002225MSI19981.672Pteropus_vampyrus
ENSRNOG00000001156Msi110084.887ENSPNYG00000004379MSI19484.887Pundamilia_nyererei
ENSRNOG00000001156Msi110085.209ENSPNYG00000002529-9485.209Pundamilia_nyererei
ENSRNOG00000001156Msi110084.244ENSPNAG00000019337msi19484.244Pygocentrus_nattereri
ENSRNOG00000001156Msi110099.678ENSRBIG00000036889MSI110099.678Rhinopithecus_bieti
ENSRNOG00000001156Msi110099.678ENSRROG00000041076MSI19399.678Rhinopithecus_roxellana
ENSRNOG00000001156Msi110099.678ENSSBOG00000030259MSI19899.678Saimiri_boliviensis_boliviensis
ENSRNOG00000001156Msi19786.928ENSSHAG00000006834MSI110086.928Sarcophilus_harrisii
ENSRNOG00000001156Msi110087.781ENSSFOG00015005350MSI19687.781Scleropages_formosus
ENSRNOG00000001156Msi110086.495ENSSFOG00015014964-9586.495Scleropages_formosus
ENSRNOG00000001156Msi18885.455ENSSMAG00000009156-7185.455Scophthalmus_maximus
ENSRNOG00000001156Msi110082.315ENSSMAG00000018824MSI19782.315Scophthalmus_maximus
ENSRNOG00000001156Msi110085.531ENSSDUG00000001027MSI19485.531Seriola_dumerili
ENSRNOG00000001156Msi110085.209ENSSDUG00000022697-9485.209Seriola_dumerili
ENSRNOG00000001156Msi110081.350ENSSLDG00000018706-9682.692Seriola_lalandi_dorsalis
ENSRNOG00000001156Msi110085.531ENSSLDG00000016832MSI19485.531Seriola_lalandi_dorsalis
ENSRNOG00000001156Msi110095.177ENSSPUG00000015741MSI110095.177Sphenodon_punctatus
ENSRNOG00000001156Msi110085.852ENSSPAG00000013098-10085.852Stegastes_partitus
ENSRNOG00000001156Msi17268.750ENSSPAG00000014085-10068.750Stegastes_partitus
ENSRNOG00000001156Msi110099.357ENSSSCG00000029365MSI110099.357Sus_scrofa
ENSRNOG00000001156Msi110096.463ENSTGUG00000009534MSI110096.463Taeniopygia_guttata
ENSRNOG00000001156Msi17480.952ENSTRUG00000016249MSI110073.783Takifugu_rubripes
ENSRNOG00000001156Msi110076.206ENSTRUG00000015636-7976.206Takifugu_rubripes
ENSRNOG00000001156Msi110060.308ENSTNIG00000019814-9560.308Tetraodon_nigroviridis
ENSRNOG00000001156Msi110079.618ENSTNIG00000011469MSI19479.618Tetraodon_nigroviridis
ENSRNOG00000001156Msi18889.011ENSTBEG00000007182MSI110089.011Tupaia_belangeri
ENSRNOG00000001156Msi110079.421ENSTTRG00000005663MSI110079.421Tursiops_truncatus
ENSRNOG00000001156Msi16992.237ENSUAMG00000015514MSI19492.237Ursus_americanus
ENSRNOG00000001156Msi19993.811ENSUMAG00000006176MSI18893.811Ursus_maritimus
ENSRNOG00000001156Msi110099.678ENSVVUG00000020993MSI110099.678Vulpes_vulpes
ENSRNOG00000001156Msi110091.987ENSXETG00000012216msi19592.038Xenopus_tropicalis
ENSRNOG00000001156Msi110070.513ENSXCOG00000017605MSI18970.513Xiphophorus_couchianus
ENSRNOG00000001156Msi110084.887ENSXMAG00000018237-9484.887Xiphophorus_maculatus
ENSRNOG00000001156Msi110085.852ENSXMAG00000027103MSI19578.846Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding12205668.NASFunction
GO:0003727single-stranded RNA binding-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IEAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-IEAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005844polysome21873635.IBAComponent
GO:0005844polysome-IEAComponent
GO:0005844polysome-ISOComponent
GO:0008266poly(U) RNA binding-IEAFunction
GO:0008266poly(U) RNA binding-ISOFunction
GO:0009725response to hormone12093154.IMPProcess
GO:0030855epithelial cell differentiation16360154.IEPProcess
GO:0042802identical protein binding-IEAFunction
GO:0042802identical protein binding-ISOFunction
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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