EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001194 (Gene tree)
Gene ID: 309673
Gene Symbol: Rrp1b
Alias: LOC309673|RGD1305633
Full Name: ribosomal RNA processing 1B
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 25556 bases
Position: chr20:10844266-10869821
Accession: 1305633
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001583	Nop52	PF05997.12	3.5e-70	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001583	-	4403	XM_001071108	ENSRNOP00000001583	733 (aa)	XP_001071108	D3ZY39

Gene Model

Click here to download ENSRNOG00000001194's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001194's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001194	Rrp1b	100	64.163	ENSG00000160208	RRP1B	100	64.163	Homo_sapiens
ENSRNOG00000001194	Rrp1b	100	54.727	ENSAMEG00000011401	RRP1B	99	54.654	Ailuropoda_melanoleuca
ENSRNOG00000001194	Rrp1b	52	46.547	ENSAMEG00000011448	RRP1	74	50.296	Ailuropoda_melanoleuca
ENSRNOG00000001194	Rrp1b	58	48.649	ENSAOCG00000017894	-	89	57.143	Amphiprion_ocellaris
ENSRNOG00000001194	Rrp1b	94	43.681	ENSAPLG00000004310	RRP1B	100	44.082	Anas_platyrhynchos
ENSRNOG00000001194	Rrp1b	99	41.076	ENSACAG00000017851	RRP1B	95	41.402	Anolis_carolinensis
ENSRNOG00000001194	Rrp1b	100	62.269	ENSANAG00000034889	RRP1B	100	62.269	Aotus_nancymaae
ENSRNOG00000001194	Rrp1b	100	58.223	ENSBTAG00000017418	RRP1B	100	58.223	Bos_taurus
ENSRNOG00000001194	Rrp1b	100	62.351	ENSCJAG00000017077	RRP1B	100	62.351	Callithrix_jacchus
ENSRNOG00000001194	Rrp1b	50	48.564	ENSCJAG00000043205	RRP1	67	51.183	Callithrix_jacchus
ENSRNOG00000001194	Rrp1b	94	60.619	ENSCAFG00000010621	RRP1B	99	60.504	Canis_familiaris
ENSRNOG00000001194	Rrp1b	100	61.141	ENSCAFG00020018901	RRP1B	100	61.030	Canis_lupus_dingo
ENSRNOG00000001194	Rrp1b	100	59.787	ENSCHIG00000021519	RRP1B	100	59.787	Capra_hircus
ENSRNOG00000001194	Rrp1b	100	58.056	ENSCPOG00000002396	RRP1B	100	58.322	Cavia_porcellus
ENSRNOG00000001194	Rrp1b	58	44.989	ENSCCAG00000029828	RRP1	71	50.000	Cebus_capucinus
ENSRNOG00000001194	Rrp1b	100	63.325	ENSCCAG00000029384	RRP1B	100	63.325	Cebus_capucinus
ENSRNOG00000001194	Rrp1b	100	64.032	ENSCATG00000017423	RRP1B	100	64.032	Cercocebus_atys
ENSRNOG00000001194	Rrp1b	50	47.185	ENSCLAG00000011639	RRP1	76	49.275	Chinchilla_lanigera
ENSRNOG00000001194	Rrp1b	100	58.779	ENSCLAG00000005622	RRP1B	100	59.010	Chinchilla_lanigera
ENSRNOG00000001194	Rrp1b	100	64.295	ENSCSAG00000007961	RRP1B	100	64.295	Chlorocebus_sabaeus
ENSRNOG00000001194	Rrp1b	51	54.381	ENSCHOG00000002426	-	55	59.226	Choloepus_hoffmanni
ENSRNOG00000001194	Rrp1b	99	46.718	ENSCPBG00000010310	RRP1B	98	46.008	Chrysemys_picta_bellii
ENSRNOG00000001194	Rrp1b	100	64.032	ENSCANG00000040952	RRP1B	100	64.032	Colobus_angolensis_palliatus
ENSRNOG00000001194	Rrp1b	100	80.134	ENSCGRG00001010889	-	100	80.134	Cricetulus_griseus_chok1gshd
ENSRNOG00000001194	Rrp1b	100	80.405	ENSCGRG00001023882	-	100	80.405	Cricetulus_griseus_chok1gshd
ENSRNOG00000001194	Rrp1b	94	79.060	ENSCGRG00000001553	Rrp1b	97	78.947	Cricetulus_griseus_crigri
ENSRNOG00000001194	Rrp1b	78	54.839	ENSCSEG00000020711	-	93	43.103	Cynoglossus_semilaevis
ENSRNOG00000001194	Rrp1b	100	56.356	ENSDNOG00000032774	RRP1B	100	56.750	Dasypus_novemcinctus
ENSRNOG00000001194	Rrp1b	53	49.497	ENSDNOG00000019880	RRP1	80	50.262	Dasypus_novemcinctus
ENSRNOG00000001194	Rrp1b	93	58.000	ENSDORG00000005496	Rrp1b	100	59.143	Dipodomys_ordii
ENSRNOG00000001194	Rrp1b	94	84.706	ENSETEG00000019489	RRP1B	93	84.706	Echinops_telfairi
ENSRNOG00000001194	Rrp1b	51	47.507	ENSEASG00005001673	RRP1	74	51.205	Equus_asinus_asinus
ENSRNOG00000001194	Rrp1b	100	63.553	ENSEASG00005001687	RRP1B	100	63.553	Equus_asinus_asinus
ENSRNOG00000001194	Rrp1b	100	63.553	ENSECAG00000018018	RRP1B	100	63.553	Equus_caballus
ENSRNOG00000001194	Rrp1b	51	45.547	ENSECAG00000015703	RRP1	74	51.205	Equus_caballus
ENSRNOG00000001194	Rrp1b	65	53.719	ENSELUG00000015885	-	91	41.739	Esox_lucius
ENSRNOG00000001194	Rrp1b	51	47.423	ENSFCAG00000008434	RRP1	82	49.202	Felis_catus
ENSRNOG00000001194	Rrp1b	100	58.246	ENSFCAG00000010272	RRP1B	100	59.396	Felis_catus
ENSRNOG00000001194	Rrp1b	92	43.113	ENSFALG00000002024	RRP1B	100	43.557	Ficedula_albicollis
ENSRNOG00000001194	Rrp1b	96	59.693	ENSFDAG00000010899	RRP1B	94	60.653	Fukomys_damarensis
ENSRNOG00000001194	Rrp1b	54	46.040	ENSFDAG00000013728	RRP1	75	47.863	Fukomys_damarensis
ENSRNOG00000001194	Rrp1b	70	53.684	ENSFHEG00000016314	-	50	43.382	Fundulus_heteroclitus
ENSRNOG00000001194	Rrp1b	63	44.954	ENSGMOG00000001953	-	69	44.954	Gadus_morhua
ENSRNOG00000001194	Rrp1b	100	43.693	ENSGALG00000035696	RRP1B	100	42.085	Gallus_gallus
ENSRNOG00000001194	Rrp1b	99	33.333	ENSGACG00000001438	rrp1	99	33.645	Gasterosteus_aculeatus
ENSRNOG00000001194	Rrp1b	100	64.032	ENSGGOG00000012069	RRP1B	100	64.032	Gorilla_gorilla
ENSRNOG00000001194	Rrp1b	99	60.658	ENSHGLG00000004968	RRP1B	100	61.053	Heterocephalus_glaber_female
ENSRNOG00000001194	Rrp1b	88	66.272	ENSHGLG00100002232	RRP1B	99	54.509	Heterocephalus_glaber_male
ENSRNOG00000001194	Rrp1b	59	45.045	ENSIPUG00000000673	-	67	42.382	Ictalurus_punctatus
ENSRNOG00000001194	Rrp1b	53	47.512	ENSSTOG00000011116	RRP1	75	51.176	Ictidomys_tridecemlineatus
ENSRNOG00000001194	Rrp1b	99	64.603	ENSSTOG00000011790	RRP1B	96	66.135	Ictidomys_tridecemlineatus
ENSRNOG00000001194	Rrp1b	100	61.346	ENSJJAG00000021279	Rrp1b	100	62.665	Jaculus_jaculus
ENSRNOG00000001194	Rrp1b	61	46.400	ENSKMAG00000005539	rrp1	71	46.400	Kryptolebias_marmoratus
ENSRNOG00000001194	Rrp1b	59	46.358	ENSLACG00000017332	-	99	40.000	Latimeria_chalumnae
ENSRNOG00000001194	Rrp1b	50	48.031	ENSLAFG00000022901	RRP1	75	51.190	Loxodonta_africana
ENSRNOG00000001194	Rrp1b	88	53.561	ENSLAFG00000000766	RRP1B	85	69.061	Loxodonta_africana
ENSRNOG00000001194	Rrp1b	100	63.900	ENSMFAG00000039152	RRP1B	100	63.900	Macaca_fascicularis
ENSRNOG00000001194	Rrp1b	100	61.854	ENSMMUG00000000104	RRP1B	100	61.854	Macaca_mulatta
ENSRNOG00000001194	Rrp1b	100	63.947	ENSMNEG00000034269	RRP1B	100	63.947	Macaca_nemestrina
ENSRNOG00000001194	Rrp1b	100	61.155	ENSMLEG00000040044	RRP1B	99	63.687	Mandrillus_leucophaeus
ENSRNOG00000001194	Rrp1b	51	54.521	ENSMGAG00000014591	RRP1B	100	43.653	Meleagris_gallopavo
ENSRNOG00000001194	Rrp1b	100	78.378	ENSMAUG00000021508	Rrp1b	100	78.378	Mesocricetus_auratus
ENSRNOG00000001194	Rrp1b	100	63.373	ENSMICG00000004686	RRP1B	100	63.505	Microcebus_murinus
ENSRNOG00000001194	Rrp1b	100	75.201	ENSMOCG00000001117	Rrp1b	100	75.603	Microtus_ochrogaster
ENSRNOG00000001194	Rrp1b	100	54.188	ENSMODG00000021033	RRP1B	100	54.974	Monodelphis_domestica
ENSRNOG00000001194	Rrp1b	100	83.401	MGP_CAROLIEiJ_G0021376	Rrp1b	100	84.490	Mus_caroli
ENSRNOG00000001194	Rrp1b	100	83.333	ENSMUSG00000058392	Rrp1b	100	83.198	Mus_musculus
ENSRNOG00000001194	Rrp1b	100	85.578	MGP_PahariEiJ_G0023695	Rrp1b	100	85.578	Mus_pahari
ENSRNOG00000001194	Rrp1b	100	82.791	MGP_SPRETEiJ_G0022290	Rrp1b	100	84.011	Mus_spretus
ENSRNOG00000001194	Rrp1b	50	42.353	ENSMPUG00000009826	RRP1	80	43.959	Mustela_putorius_furo
ENSRNOG00000001194	Rrp1b	83	52.366	ENSMPUG00000009810	RRP1B	99	52.524	Mustela_putorius_furo
ENSRNOG00000001194	Rrp1b	99	60.474	ENSMLUG00000007738	RRP1B	99	60.343	Myotis_lucifugus
ENSRNOG00000001194	Rrp1b	100	68.000	ENSNGAG00000021073	Rrp1b	100	67.333	Nannospalax_galili
ENSRNOG00000001194	Rrp1b	100	63.347	ENSNLEG00000001490	RRP1B	100	63.347	Nomascus_leucogenys
ENSRNOG00000001194	Rrp1b	71	78.151	ENSMEUG00000003226	-	81	78.889	Notamacropus_eugenii
ENSRNOG00000001194	Rrp1b	100	58.165	ENSODEG00000013177	RRP1B	100	57.760	Octodon_degus
ENSRNOG00000001194	Rrp1b	99	46.390	ENSOANG00000006470	RRP1B	99	46.390	Ornithorhynchus_anatinus
ENSRNOG00000001194	Rrp1b	94	52.883	ENSOCUG00000025931	RRP1B	100	52.750	Oryctolagus_cuniculus
ENSRNOG00000001194	Rrp1b	69	44.780	ENSORLG00020007199	-	67	45.977	Oryzias_latipes_hni
ENSRNOG00000001194	Rrp1b	65	45.528	ENSORLG00015004425	-	53	46.264	Oryzias_latipes_hsok
ENSRNOG00000001194	Rrp1b	64	48.000	ENSOMEG00000016910	-	55	57.303	Oryzias_melastigma
ENSRNOG00000001194	Rrp1b	80	74.167	ENSOGAG00000009872	RRP1B	89	74.167	Otolemur_garnettii
ENSRNOG00000001194	Rrp1b	94	57.546	ENSOARG00000011314	RRP1B	100	57.546	Ovis_aries
ENSRNOG00000001194	Rrp1b	94	63.408	ENSPPAG00000035319	RRP1B	99	63.319	Pan_paniscus
ENSRNOG00000001194	Rrp1b	50	47.480	ENSPPRG00000010656	RRP1	73	50.301	Panthera_pardus
ENSRNOG00000001194	Rrp1b	100	57.556	ENSPPRG00000010356	RRP1B	100	58.486	Panthera_pardus
ENSRNOG00000001194	Rrp1b	81	61.634	ENSPTIG00000016894	RRP1B	99	60.095	Panthera_tigris_altaica
ENSRNOG00000001194	Rrp1b	100	64.032	ENSPTRG00000013958	RRP1B	100	64.032	Pan_troglodytes
ENSRNOG00000001194	Rrp1b	100	64.163	ENSPANG00000011090	RRP1B	100	64.163	Papio_anubis
ENSRNOG00000001194	Rrp1b	99	46.173	ENSPSIG00000008152	RRP1B	96	46.310	Pelodiscus_sinensis
ENSRNOG00000001194	Rrp1b	100	82.138	ENSPEMG00000022490	Rrp1b	100	82.409	Peromyscus_maniculatus_bairdii
ENSRNOG00000001194	Rrp1b	57	48.853	ENSPCIG00000015523	-	74	55.882	Phascolarctos_cinereus
ENSRNOG00000001194	Rrp1b	100	55.222	ENSPCIG00000015513	RRP1B	100	55.628	Phascolarctos_cinereus
ENSRNOG00000001194	Rrp1b	99	34.956	ENSPFOG00000007424	-	99	34.707	Poecilia_formosa
ENSRNOG00000001194	Rrp1b	52	41.131	ENSPLAG00000016684	-	50	43.391	Poecilia_latipinna
ENSRNOG00000001194	Rrp1b	59	58.511	ENSPREG00000015673	-	53	58.511	Poecilia_reticulata
ENSRNOG00000001194	Rrp1b	100	64.427	ENSPPYG00000011470	RRP1B	100	64.427	Pongo_abelii
ENSRNOG00000001194	Rrp1b	85	86.170	ENSPCAG00000013723	RRP1B	90	86.170	Procavia_capensis
ENSRNOG00000001194	Rrp1b	100	62.978	ENSPCOG00000017927	RRP1B	100	63.373	Propithecus_coquereli
ENSRNOG00000001194	Rrp1b	99	55.789	ENSPVAG00000001436	RRP1B	99	55.995	Pteropus_vampyrus
ENSRNOG00000001194	Rrp1b	56	57.955	ENSPNAG00000007718	-	62	42.363	Pygocentrus_nattereri
ENSRNOG00000001194	Rrp1b	100	60.343	ENSRBIG00000041689	RRP1B	100	60.343	Rhinopithecus_bieti
ENSRNOG00000001194	Rrp1b	100	64.427	ENSRROG00000031499	RRP1B	100	64.427	Rhinopithecus_roxellana
ENSRNOG00000001194	Rrp1b	94	60.916	ENSSBOG00000034727	RRP1B	99	60.916	Saimiri_boliviensis_boliviensis
ENSRNOG00000001194	Rrp1b	50	49.198	ENSSBOG00000034689	RRP1	71	51.672	Saimiri_boliviensis_boliviensis
ENSRNOG00000001194	Rrp1b	100	55.222	ENSSHAG00000017789	RRP1B	100	55.381	Sarcophilus_harrisii
ENSRNOG00000001194	Rrp1b	66	44.286	ENSSMAG00000016847	-	83	43.824	Scophthalmus_maximus
ENSRNOG00000001194	Rrp1b	68	43.796	ENSSDUG00000000551	-	56	43.243	Seriola_dumerili
ENSRNOG00000001194	Rrp1b	68	43.796	ENSSLDG00000002538	-	56	43.243	Seriola_lalandi_dorsalis
ENSRNOG00000001194	Rrp1b	75	64.260	ENSSARG00000003108	-	78	64.260	Sorex_araneus
ENSRNOG00000001194	Rrp1b	100	42.416	ENSSPUG00000002834	RRP1B	100	42.474	Sphenodon_punctatus
ENSRNOG00000001194	Rrp1b	65	46.457	ENSSPAG00000005370	-	59	42.588	Stegastes_partitus
ENSRNOG00000001194	Rrp1b	100	55.467	ENSSSCG00000021698	RRP1B	100	55.467	Sus_scrofa
ENSRNOG00000001194	Rrp1b	61	44.330	ENSTNIG00000005053	rrp1	70	44.509	Tetraodon_nigroviridis
ENSRNOG00000001194	Rrp1b	91	60.899	ENSTBEG00000000422	RRP1B	99	72.700	Tupaia_belangeri
ENSRNOG00000001194	Rrp1b	100	56.897	ENSTTRG00000000723	RRP1B	100	56.897	Tursiops_truncatus
ENSRNOG00000001194	Rrp1b	100	57.450	ENSUAMG00000026765	RRP1B	100	57.754	Ursus_americanus
ENSRNOG00000001194	Rrp1b	64	75.397	ENSUMAG00000025510	RRP1B	92	74.603	Ursus_maritimus
ENSRNOG00000001194	Rrp1b	94	60.674	ENSVVUG00000024509	RRP1B	99	60.559	Vulpes_vulpes
ENSRNOG00000001194	Rrp1b	64	46.610	ENSXETG00000013683	rrp1b	63	52.128	Xenopus_tropicalis
ENSRNOG00000001194	Rrp1b	71	42.318	ENSXMAG00000023123	-	63	42.737	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000791	euchromatin	-	IEA	Component
GO:0000791	euchromatin	-	ISO	Component
GO:0000792	heterochromatin	-	IEA	Component
GO:0000792	heterochromatin	-	ISO	Component
GO:0001652	granular component	-	IEA	Component
GO:0001652	granular component	-	ISO	Component
GO:0003713	transcription coactivator activity	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0010923	negative regulation of phosphatase activity	-	IEA	Process
GO:0010923	negative regulation of phosphatase activity	-	ISO	Process
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0030688	preribosome, small subunit precursor	-	IEA	Component
GO:0034260	negative regulation of GTPase activity	-	IEA	Process
GO:0034260	negative regulation of GTPase activity	-	ISO	Process
GO:0043065	positive regulation of apoptotic process	-	IEA	Process
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0043923	positive regulation by host of viral transcription	-	IEA	Process
GO:0043923	positive regulation by host of viral transcription	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0098586	cellular response to virus	-	IEA	Process
GO:0098586	cellular response to virus	-	ISO	Process