EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001245 (Gene tree)
Gene ID: 294336
Gene Symbol: Pcbp3
Alias: LOC294336
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 200667 bases
Position: chr20:12429315-12629981
Accession: 1307430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001675	KH_1	PF00013.29	8.4e-56	1	3
ENSRNOP00000001675	KH_1	PF00013.29	8.4e-56	2	3
ENSRNOP00000001675	KH_1	PF00013.29	8.4e-56	3	3
ENSRNOP00000001675	KH_2	PF07650.17	2.1e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001675	-	2052	XM_006256283	ENSRNOP00000001675	319 (aa)	XP_006256345	Q6AY48

Gene Model

Click here to download ENSRNOG00000001245's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001245's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000001245	Pcbp3	65	35.938	ENSRNOG00000047628	Khsrp	52	35.938
ENSRNOG00000001245	Pcbp3	94	33.813	ENSRNOG00000009052	Igf2bp3	59	33.813
ENSRNOG00000001245	Pcbp3	65	40.625	ENSRNOG00000043370	Fubp1	52	40.625
ENSRNOG00000001245	Pcbp3	78	52.857	ENSRNOG00000019113	Hnrnpk	57	52.857
ENSRNOG00000001245	Pcbp3	67	41.270	ENSRNOG00000009139	Fubp3	59	41.270
ENSRNOG00000001245	Pcbp3	98	37.037	ENSRNOG00000025946	Igf2bp2	62	37.037
ENSRNOG00000001245	Pcbp3	78	51.429	ENSRNOG00000013579	LOC100359916	57	51.429
ENSRNOG00000001245	Pcbp3	99	64.134	ENSRNOG00000006713	AC099137.1	99	64.134
ENSRNOG00000001245	Pcbp3	94	64.333	ENSRNOG00000012406	Pcbp4	73	64.333
ENSRNOG00000001245	Pcbp3	99	77.083	ENSRNOG00000036852	Pcbp2	99	77.083
ENSRNOG00000001245	Pcbp3	93	42.254	ENSRNOG00000031440	Nova1	58	42.254
ENSRNOG00000001245	Pcbp3	94	33.582	ENSRNOG00000006122	Igf2bp1	59	33.582

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001245	Pcbp3	98	91.693	ENSAPOG00000020003	pcbp3	87	91.693	Acanthochromis_polyacanthus
ENSRNOG00000001245	Pcbp3	95	97.368	ENSAPOG00000016582	-	98	93.417	Acanthochromis_polyacanthus
ENSRNOG00000001245	Pcbp3	100	94.379	ENSAMEG00000001697	-	100	90.085	Ailuropoda_melanoleuca
ENSRNOG00000001245	Pcbp3	95	86.544	ENSACIG00000010933	pcbp3	93	86.544	Amphilophus_citrinellus
ENSRNOG00000001245	Pcbp3	98	92.523	ENSACIG00000002739	-	98	92.523	Amphilophus_citrinellus
ENSRNOG00000001245	Pcbp3	95	96.370	ENSAOCG00000008592	-	96	96.370	Amphiprion_ocellaris
ENSRNOG00000001245	Pcbp3	96	92.491	ENSAOCG00000007806	-	100	92.491	Amphiprion_ocellaris
ENSRNOG00000001245	Pcbp3	98	95.541	ENSAPEG00000005209	-	98	95.541	Amphiprion_percula
ENSRNOG00000001245	Pcbp3	95	88.754	ENSAPEG00000008011	pcbp3	93	88.754	Amphiprion_percula
ENSRNOG00000001245	Pcbp3	98	94.904	ENSATEG00000009833	-	98	94.904	Anabas_testudineus
ENSRNOG00000001245	Pcbp3	95	87.117	ENSATEG00000015787	-	98	87.117	Anabas_testudineus
ENSRNOG00000001245	Pcbp3	97	78.371	ENSAPLG00000008951	-	80	78.371	Anas_platyrhynchos
ENSRNOG00000001245	Pcbp3	100	94.595	ENSAPLG00000002975	-	100	94.595	Anas_platyrhynchos
ENSRNOG00000001245	Pcbp3	100	87.293	ENSACAG00000004607	-	100	87.293	Anolis_carolinensis
ENSRNOG00000001245	Pcbp3	99	84.751	ENSACAG00000009819	-	99	84.751	Anolis_carolinensis
ENSRNOG00000001245	Pcbp3	96	100.000	ENSANAG00000030702	-	100	100.000	Aotus_nancymaae
ENSRNOG00000001245	Pcbp3	95	88.450	ENSACLG00000011835	pcbp3	93	88.450	Astatotilapia_calliptera
ENSRNOG00000001245	Pcbp3	98	96.815	ENSACLG00000003801	-	98	96.815	Astatotilapia_calliptera
ENSRNOG00000001245	Pcbp3	95	91.749	ENSAMXG00000013588	-	98	91.749	Astyanax_mexicanus
ENSRNOG00000001245	Pcbp3	97	67.964	ENSAMXG00000001760	zgc:110045	73	67.964	Astyanax_mexicanus
ENSRNOG00000001245	Pcbp3	95	90.520	ENSAMXG00000003440	pcbp3	93	90.520	Astyanax_mexicanus
ENSRNOG00000001245	Pcbp3	92	100.000	ENSCAFG00020019472	-	83	100.000	Canis_lupus_dingo
ENSRNOG00000001245	Pcbp3	100	99.687	ENSCSAG00000007440	-	91	99.687	Chlorocebus_sabaeus
ENSRNOG00000001245	Pcbp3	97	99.029	ENSCPBG00000012151	-	100	93.215	Chrysemys_picta_bellii
ENSRNOG00000001245	Pcbp3	97	84.290	ENSCPBG00000000733	-	73	84.290	Chrysemys_picta_bellii
ENSRNOG00000001245	Pcbp3	98	77.941	ENSCSEG00000016984	-	98	77.941	Cynoglossus_semilaevis
ENSRNOG00000001245	Pcbp3	95	92.409	ENSCSEG00000000822	pcbp3	97	92.409	Cynoglossus_semilaevis
ENSRNOG00000001245	Pcbp3	99	96.855	ENSCVAG00000005262	-	99	96.855	Cyprinodon_variegatus
ENSRNOG00000001245	Pcbp3	95	88.450	ENSCVAG00000014482	pcbp3	93	88.450	Cyprinodon_variegatus
ENSRNOG00000001245	Pcbp3	99	90.909	ENSDARG00000054378	pcbp3	99	90.909	Danio_rerio
ENSRNOG00000001245	Pcbp3	100	86.207	ENSETEG00000015988	-	100	86.207	Echinops_telfairi
ENSRNOG00000001245	Pcbp3	98	82.019	ENSEBUG00000007485	-	92	82.805	Eptatretus_burgeri
ENSRNOG00000001245	Pcbp3	92	70.732	ENSEBUG00000005495	pcbp3	73	70.732	Eptatretus_burgeri
ENSRNOG00000001245	Pcbp3	96	74.286	ENSEBUG00000016192	pcbp3	99	74.721	Eptatretus_burgeri
ENSRNOG00000001245	Pcbp3	95	89.602	ENSELUG00000003521	pcbp3	93	89.602	Esox_lucius
ENSRNOG00000001245	Pcbp3	95	97.360	ENSELUG00000001560	-	84	97.360	Esox_lucius
ENSRNOG00000001245	Pcbp3	97	78.652	ENSFALG00000004411	-	75	78.652	Ficedula_albicollis
ENSRNOG00000001245	Pcbp3	100	98.119	ENSFALG00000003949	-	100	98.119	Ficedula_albicollis
ENSRNOG00000001245	Pcbp3	99	94.654	ENSFHEG00000006539	-	99	94.654	Fundulus_heteroclitus
ENSRNOG00000001245	Pcbp3	96	93.137	ENSFHEG00000016615	pcbp3	94	93.137	Fundulus_heteroclitus
ENSRNOG00000001245	Pcbp3	95	69.632	ENSGMOG00000008611	-	98	69.632	Gadus_morhua
ENSRNOG00000001245	Pcbp3	95	79.878	ENSGMOG00000011992	pcbp3	95	79.878	Gadus_morhua
ENSRNOG00000001245	Pcbp3	98	83.529	ENSGALG00000013155	-	99	81.982	Gallus_gallus
ENSRNOG00000001245	Pcbp3	100	84.807	ENSGALG00000004394	-	99	91.892	Gallus_gallus
ENSRNOG00000001245	Pcbp3	97	84.592	ENSGAFG00000011430	pcbp3	95	84.592	Gambusia_affinis
ENSRNOG00000001245	Pcbp3	95	97.039	ENSGAFG00000010274	-	93	97.039	Gambusia_affinis
ENSRNOG00000001245	Pcbp3	98	89.851	ENSGACG00000002266	-	98	89.851	Gasterosteus_aculeatus
ENSRNOG00000001245	Pcbp3	98	78.992	ENSGACG00000014955	-	98	78.992	Gasterosteus_aculeatus
ENSRNOG00000001245	Pcbp3	80	89.744	ENSGAGG00000006956	-	78	89.744	Gopherus_agassizii
ENSRNOG00000001245	Pcbp3	92	90.637	ENSGAGG00000000271	-	100	90.637	Gopherus_agassizii
ENSRNOG00000001245	Pcbp3	95	93.069	ENSHBUG00000010697	pcbp3	96	93.069	Haplochromis_burtoni
ENSRNOG00000001245	Pcbp3	98	96.815	ENSHBUG00000021782	-	98	96.815	Haplochromis_burtoni
ENSRNOG00000001245	Pcbp3	95	88.720	ENSHCOG00000017868	pcbp3	93	88.720	Hippocampus_comes
ENSRNOG00000001245	Pcbp3	98	92.675	ENSHCOG00000006067	-	98	92.675	Hippocampus_comes
ENSRNOG00000001245	Pcbp3	99	94.969	ENSIPUG00000006238	pcbp3	99	94.969	Ictalurus_punctatus
ENSRNOG00000001245	Pcbp3	95	96.382	ENSKMAG00000018530	-	93	96.382	Kryptolebias_marmoratus
ENSRNOG00000001245	Pcbp3	95	88.754	ENSKMAG00000003046	pcbp3	93	88.754	Kryptolebias_marmoratus
ENSRNOG00000001245	Pcbp3	97	92.283	ENSLBEG00000006201	pcbp3	96	92.283	Labrus_bergylta
ENSRNOG00000001245	Pcbp3	98	80.564	ENSLBEG00000006542	-	98	80.564	Labrus_bergylta
ENSRNOG00000001245	Pcbp3	97	85.070	ENSLACG00000010386	pcbp3	75	85.070	Latimeria_chalumnae
ENSRNOG00000001245	Pcbp3	97	78.470	ENSLACG00000010804	zgc:110045	74	78.470	Latimeria_chalumnae
ENSRNOG00000001245	Pcbp3	97	83.988	ENSLOCG00000005058	zgc:110045	81	83.988	Lepisosteus_oculatus
ENSRNOG00000001245	Pcbp3	100	91.740	ENSLOCG00000009369	pcbp3	100	91.740	Lepisosteus_oculatus
ENSRNOG00000001245	Pcbp3	98	94.268	ENSMAMG00000011620	-	98	94.268	Mastacembelus_armatus
ENSRNOG00000001245	Pcbp3	95	93.399	ENSMAMG00000022336	pcbp3	91	93.399	Mastacembelus_armatus
ENSRNOG00000001245	Pcbp3	95	86.544	ENSMZEG00005008993	pcbp3	96	85.933	Maylandia_zebra
ENSRNOG00000001245	Pcbp3	95	86.349	ENSMZEG00005014882	-	98	82.799	Maylandia_zebra
ENSRNOG00000001245	Pcbp3	97	82.571	ENSMGAG00000001883	-	97	82.857	Meleagris_gallopavo
ENSRNOG00000001245	Pcbp3	97	78.933	ENSMGAG00000006794	-	75	78.933	Meleagris_gallopavo
ENSRNOG00000001245	Pcbp3	98	93.949	ENSMMOG00000005216	-	98	93.949	Mola_mola
ENSRNOG00000001245	Pcbp3	95	92.459	ENSMMOG00000000730	pcbp3	86	92.459	Mola_mola
ENSRNOG00000001245	Pcbp3	71	79.439	ENSMODG00000027884	-	93	79.439	Monodelphis_domestica
ENSRNOG00000001245	Pcbp3	95	86.810	ENSMALG00000000691	pcbp3	98	83.871	Monopterus_albus
ENSRNOG00000001245	Pcbp3	100	87.611	ENSMPUG00000001779	-	92	87.611	Mustela_putorius_furo
ENSRNOG00000001245	Pcbp3	95	86.239	ENSNBRG00000016409	-	93	86.239	Neolamprologus_brichardi
ENSRNOG00000001245	Pcbp3	99	85.329	ENSNBRG00000016714	-	100	85.329	Neolamprologus_brichardi
ENSRNOG00000001245	Pcbp3	96	84.571	ENSOPRG00000003431	-	100	84.571	Ochotona_princeps
ENSRNOG00000001245	Pcbp3	95	83.815	ENSONIG00000012122	-	96	83.815	Oreochromis_niloticus
ENSRNOG00000001245	Pcbp3	98	96.815	ENSONIG00000004611	-	98	96.815	Oreochromis_niloticus
ENSRNOG00000001245	Pcbp3	100	99.373	ENSOCUG00000002696	-	91	99.373	Oryctolagus_cuniculus
ENSRNOG00000001245	Pcbp3	95	96.370	ENSORLG00000000059	pcbp3	98	96.370	Oryzias_latipes
ENSRNOG00000001245	Pcbp3	98	97.134	ENSORLG00000022739	-	98	97.134	Oryzias_latipes
ENSRNOG00000001245	Pcbp3	98	96.815	ENSORLG00020006124	-	98	96.815	Oryzias_latipes_hni
ENSRNOG00000001245	Pcbp3	98	94.872	ENSORLG00020012671	pcbp3	97	94.872	Oryzias_latipes_hni
ENSRNOG00000001245	Pcbp3	98	94.872	ENSORLG00015000429	pcbp3	97	94.872	Oryzias_latipes_hsok
ENSRNOG00000001245	Pcbp3	97	95.820	ENSORLG00015008051	-	95	95.820	Oryzias_latipes_hsok
ENSRNOG00000001245	Pcbp3	98	96.815	ENSOMEG00000020162	-	98	96.815	Oryzias_melastigma
ENSRNOG00000001245	Pcbp3	95	93.103	ENSOMEG00000020811	pcbp3	99	93.103	Oryzias_melastigma
ENSRNOG00000001245	Pcbp3	100	86.575	ENSOGAG00000008044	-	100	86.575	Otolemur_garnettii
ENSRNOG00000001245	Pcbp3	98	95.541	ENSPKIG00000019329	pcbp3	98	95.541	Paramormyrops_kingsleyae
ENSRNOG00000001245	Pcbp3	80	83.590	ENSPKIG00000020913	-	84	83.590	Paramormyrops_kingsleyae
ENSRNOG00000001245	Pcbp3	100	84.821	ENSPSIG00000014970	-	100	85.417	Pelodiscus_sinensis
ENSRNOG00000001245	Pcbp3	92	82.114	ENSPSIG00000008350	-	68	82.114	Pelodiscus_sinensis
ENSRNOG00000001245	Pcbp3	95	89.231	ENSPMGG00000022383	pcbp3	93	89.231	Periophthalmus_magnuspinnatus
ENSRNOG00000001245	Pcbp3	80	89.119	ENSPMAG00000004637	-	100	89.119	Petromyzon_marinus
ENSRNOG00000001245	Pcbp3	98	74.132	ENSPMAG00000004551	pcbp3	91	74.132	Petromyzon_marinus
ENSRNOG00000001245	Pcbp3	100	92.690	ENSPCIG00000028092	-	99	93.722	Phascolarctos_cinereus
ENSRNOG00000001245	Pcbp3	98	90.826	ENSPLAG00000004074	-	91	90.826	Poecilia_latipinna
ENSRNOG00000001245	Pcbp3	97	79.772	ENSPLAG00000011449	pcbp3	87	79.772	Poecilia_latipinna
ENSRNOG00000001245	Pcbp3	100	86.667	ENSPMEG00000006653	-	100	86.957	Poecilia_mexicana
ENSRNOG00000001245	Pcbp3	95	88.450	ENSPMEG00000021239	pcbp3	93	88.450	Poecilia_mexicana
ENSRNOG00000001245	Pcbp3	95	91.475	ENSPREG00000015736	pcbp3	97	91.475	Poecilia_reticulata
ENSRNOG00000001245	Pcbp3	98	94.904	ENSPREG00000020585	-	98	94.904	Poecilia_reticulata
ENSRNOG00000001245	Pcbp3	98	94.268	ENSPNYG00000013205	-	98	94.268	Pundamilia_nyererei
ENSRNOG00000001245	Pcbp3	95	93.399	ENSPNYG00000012326	pcbp3	93	93.399	Pundamilia_nyererei
ENSRNOG00000001245	Pcbp3	99	97.170	ENSPNAG00000015104	pcbp3	99	97.170	Pygocentrus_nattereri
ENSRNOG00000001245	Pcbp3	94	92.359	ENSPNAG00000008541	-	96	92.359	Pygocentrus_nattereri
ENSRNOG00000001245	Pcbp3	100	88.218	ENSRBIG00000028177	-	92	88.218	Rhinopithecus_bieti
ENSRNOG00000001245	Pcbp3	100	93.215	ENSSHAG00000007890	-	100	93.215	Sarcophilus_harrisii
ENSRNOG00000001245	Pcbp3	95	97.368	ENSSFOG00015010205	pcbp3	93	97.368	Scleropages_formosus
ENSRNOG00000001245	Pcbp3	99	83.648	ENSSFOG00015007118	-	97	83.648	Scleropages_formosus
ENSRNOG00000001245	Pcbp3	95	89.297	ENSSFOG00015014706	pcbp3	93	89.297	Scleropages_formosus
ENSRNOG00000001245	Pcbp3	95	93.729	ENSSMAG00000011929	pcbp3	95	93.729	Scophthalmus_maximus
ENSRNOG00000001245	Pcbp3	98	96.815	ENSSMAG00000003135	-	98	96.815	Scophthalmus_maximus
ENSRNOG00000001245	Pcbp3	95	86.280	ENSSDUG00000011608	pcbp3	97	86.280	Seriola_dumerili
ENSRNOG00000001245	Pcbp3	95	90.554	ENSSDUG00000008502	-	98	85.855	Seriola_dumerili
ENSRNOG00000001245	Pcbp3	95	97.368	ENSSLDG00000020161	-	93	97.368	Seriola_lalandi_dorsalis
ENSRNOG00000001245	Pcbp3	95	86.280	ENSSLDG00000008518	pcbp3	97	86.280	Seriola_lalandi_dorsalis
ENSRNOG00000001245	Pcbp3	92	83.045	ENSSPUG00000013214	-	92	85.366	Sphenodon_punctatus
ENSRNOG00000001245	Pcbp3	95	75.535	ENSSPAG00000023341	-	93	75.535	Stegastes_partitus
ENSRNOG00000001245	Pcbp3	96	92.833	ENSSPAG00000004190	-	100	92.833	Stegastes_partitus
ENSRNOG00000001245	Pcbp3	100	89.676	ENSTGUG00000003316	-	100	89.676	Taeniopygia_guttata
ENSRNOG00000001245	Pcbp3	99	90.881	ENSTGUG00000008158	-	100	90.881	Taeniopygia_guttata
ENSRNOG00000001245	Pcbp3	96	96.875	ENSTRUG00000006280	-	92	96.875	Takifugu_rubripes
ENSRNOG00000001245	Pcbp3	95	90.221	ENSTRUG00000013604	pcbp3	93	90.221	Takifugu_rubripes
ENSRNOG00000001245	Pcbp3	100	87.017	ENSTTRG00000015075	-	100	87.017	Tursiops_truncatus
ENSRNOG00000001245	Pcbp3	91	77.515	ENSXETG00000010491	pcbp2	74	77.515	Xenopus_tropicalis
ENSRNOG00000001245	Pcbp3	100	90.265	ENSXETG00000011483	pcbp1	100	90.265	Xenopus_tropicalis
ENSRNOG00000001245	Pcbp3	95	88.450	ENSXCOG00000020481	pcbp3	93	88.450	Xiphophorus_couchianus
ENSRNOG00000001245	Pcbp3	95	88.754	ENSXMAG00000008175	pcbp3	93	88.754	Xiphophorus_maculatus
ENSRNOG00000001245	Pcbp3	95	97.368	ENSXMAG00000028711	-	93	97.368	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:1990829	C-rich single-stranded DNA binding	-	ISO	Function