EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001256 (Gene tree)
Gene ID: 288663
Gene Symbol: Atxn2
Alias: LOC288663|Sca2
Full Name: ataxin 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 65951 bases
Position: chr12:40266662-40332612
Accession: 1306637
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001691	PAM2	PF07145.15	6.9e-07	1	1
ENSRNOP00000001691	LsmAD	PF06741.13	5.8e-16	1	1
ENSRNOP00000001691	SM-ATX	PF14438.6	1.5e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001691	-	3654	XM_008769281	ENSRNOP00000001691	1085 (aa)	XP_008758710	F1M049

Gene Model

Click here to download ENSRNOG00000001256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000001256	Atxn2	99	37.987	ENSRNOG00000018686	Atxn2l	87	35.644

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001256	Atxn2	98	94.195	ENSG00000204842	ATXN2	99	93.953	Homo_sapiens
ENSRNOG00000001256	Atxn2	94	69.841	ENSAPOG00000014663	atxn2	97	70.227	Acanthochromis_polyacanthus
ENSRNOG00000001256	Atxn2	99	93.756	ENSAMEG00000013747	ATXN2	100	93.756	Ailuropoda_melanoleuca
ENSRNOG00000001256	Atxn2	95	57.290	ENSACIG00000004928	atxn2	100	56.285	Amphilophus_citrinellus
ENSRNOG00000001256	Atxn2	94	68.750	ENSAOCG00000001107	atxn2	97	69.108	Amphiprion_ocellaris
ENSRNOG00000001256	Atxn2	94	69.841	ENSAPEG00000020250	atxn2	96	70.227	Amphiprion_percula
ENSRNOG00000001256	Atxn2	95	55.027	ENSATEG00000018587	atxn2	100	55.856	Anabas_testudineus
ENSRNOG00000001256	Atxn2	99	86.220	ENSAPLG00000008724	ATXN2	100	85.754	Anas_platyrhynchos
ENSRNOG00000001256	Atxn2	99	79.444	ENSACAG00000002419	ATXN2	100	80.463	Anolis_carolinensis
ENSRNOG00000001256	Atxn2	99	93.500	ENSANAG00000022522	ATXN2	100	91.620	Aotus_nancymaae
ENSRNOG00000001256	Atxn2	96	57.674	ENSACLG00000013359	atxn2	97	57.156	Astatotilapia_calliptera
ENSRNOG00000001256	Atxn2	93	68.671	ENSAMXG00000002342	atxn2	89	68.489	Astyanax_mexicanus
ENSRNOG00000001256	Atxn2	98	94.140	ENSBTAG00000022069	ATXN2	100	94.090	Bos_taurus
ENSRNOG00000001256	Atxn2	98	93.440	ENSCJAG00000011756	ATXN2	100	89.800	Callithrix_jacchus
ENSRNOG00000001256	Atxn2	98	93.633	ENSCAFG00000008606	ATXN2	82	93.488	Canis_familiaris
ENSRNOG00000001256	Atxn2	97	94.280	ENSCAFG00020017041	ATXN2	100	94.280	Canis_lupus_dingo
ENSRNOG00000001256	Atxn2	98	93.679	ENSCHIG00000012141	ATXN2	81	93.679	Capra_hircus
ENSRNOG00000001256	Atxn2	99	94.206	ENSTSYG00000002717	ATXN2	100	92.423	Carlito_syrichta
ENSRNOG00000001256	Atxn2	79	81.533	ENSCAPG00000013332	ATXN2	100	85.862	Cavia_aperea
ENSRNOG00000001256	Atxn2	99	93.023	ENSCPOG00000001390	ATXN2	96	90.461	Cavia_porcellus
ENSRNOG00000001256	Atxn2	99	93.756	ENSCCAG00000026267	ATXN2	100	91.713	Cebus_capucinus
ENSRNOG00000001256	Atxn2	98	93.914	ENSCATG00000017877	ATXN2	100	89.990	Cercocebus_atys
ENSRNOG00000001256	Atxn2	99	93.569	ENSCLAG00000009324	ATXN2	98	93.569	Chinchilla_lanigera
ENSRNOG00000001256	Atxn2	98	93.832	ENSCSAG00000002590	ATXN2	93	93.767	Chlorocebus_sabaeus
ENSRNOG00000001256	Atxn2	80	88.740	ENSCHOG00000004284	ATXN2	86	88.740	Choloepus_hoffmanni
ENSRNOG00000001256	Atxn2	97	75.497	ENSCPBG00000003465	ATXN2	100	74.078	Chrysemys_picta_bellii
ENSRNOG00000001256	Atxn2	99	94.112	ENSCANG00000042302	ATXN2	100	94.112	Colobus_angolensis_palliatus
ENSRNOG00000001256	Atxn2	98	93.738	ENSCGRG00001022603	Atxn2	84	93.587	Cricetulus_griseus_chok1gshd
ENSRNOG00000001256	Atxn2	99	95.853	ENSCGRG00000015823	Atxn2	99	95.853	Cricetulus_griseus_crigri
ENSRNOG00000001256	Atxn2	97	61.602	ENSCSEG00000009072	-	97	66.032	Cynoglossus_semilaevis
ENSRNOG00000001256	Atxn2	99	47.271	ENSCSEG00000018366	atxn2	97	67.961	Cynoglossus_semilaevis
ENSRNOG00000001256	Atxn2	95	66.366	ENSCVAG00000020160	atxn2	97	68.608	Cyprinodon_variegatus
ENSRNOG00000001256	Atxn2	99	59.786	ENSDARG00000052897	atxn2	97	59.481	Danio_rerio
ENSRNOG00000001256	Atxn2	98	92.991	ENSDNOG00000015696	ATXN2	100	91.138	Dasypus_novemcinctus
ENSRNOG00000001256	Atxn2	98	84.393	ENSDORG00000000808	Atxn2	99	83.974	Dipodomys_ordii
ENSRNOG00000001256	Atxn2	93	92.857	ENSETEG00000005224	ATXN2	77	92.857	Echinops_telfairi
ENSRNOG00000001256	Atxn2	99	93.506	ENSEASG00005012077	ATXN2	100	93.103	Equus_asinus_asinus
ENSRNOG00000001256	Atxn2	99	93.663	ENSECAG00000014347	ATXN2	80	91.667	Equus_caballus
ENSRNOG00000001256	Atxn2	72	92.787	ENSEEUG00000014635	-	73	92.787	Erinaceus_europaeus
ENSRNOG00000001256	Atxn2	99	56.857	ENSELUG00000019632	atxn2	97	57.052	Esox_lucius
ENSRNOG00000001256	Atxn2	98	94.189	ENSFCAG00000003178	ATXN2	100	90.276	Felis_catus
ENSRNOG00000001256	Atxn2	97	83.254	ENSFALG00000009001	ATXN2	100	82.778	Ficedula_albicollis
ENSRNOG00000001256	Atxn2	99	93.377	ENSFDAG00000020942	ATXN2	100	93.377	Fukomys_damarensis
ENSRNOG00000001256	Atxn2	89	66.272	ENSFHEG00000019561	atxn2	95	68.471	Fundulus_heteroclitus
ENSRNOG00000001256	Atxn2	92	61.667	ENSGMOG00000007412	atxn2	93	59.000	Gadus_morhua
ENSRNOG00000001256	Atxn2	99	81.001	ENSGALG00000004625	ATXN2	99	80.837	Gallus_gallus
ENSRNOG00000001256	Atxn2	94	67.568	ENSGAFG00000003302	atxn2	97	69.903	Gambusia_affinis
ENSRNOG00000001256	Atxn2	98	57.078	ENSGACG00000006295	atxn2	100	56.806	Gasterosteus_aculeatus
ENSRNOG00000001256	Atxn2	97	74.095	ENSGAGG00000005014	ATXN2	100	74.430	Gopherus_agassizii
ENSRNOG00000001256	Atxn2	97	93.911	ENSGGOG00000002137	ATXN2	100	93.911	Gorilla_gorilla
ENSRNOG00000001256	Atxn2	94	69.524	ENSHBUG00000002921	atxn2	97	69.903	Haplochromis_burtoni
ENSRNOG00000001256	Atxn2	98	91.121	ENSHGLG00000009812	ATXN2	84	91.070	Heterocephalus_glaber_female
ENSRNOG00000001256	Atxn2	99	93.563	ENSHGLG00100019351	ATXN2	100	93.563	Heterocephalus_glaber_male
ENSRNOG00000001256	Atxn2	95	65.882	ENSHCOG00000005278	atxn2	94	67.712	Hippocampus_comes
ENSRNOG00000001256	Atxn2	99	93.750	ENSSTOG00000000978	ATXN2	100	90.607	Ictidomys_tridecemlineatus
ENSRNOG00000001256	Atxn2	95	66.866	ENSKMAG00000000980	atxn2	97	68.790	Kryptolebias_marmoratus
ENSRNOG00000001256	Atxn2	55	51.852	ENSLBEG00000017484	atxn2	94	51.680	Labrus_bergylta
ENSRNOG00000001256	Atxn2	99	73.438	ENSLACG00000012531	ATXN2	100	73.805	Latimeria_chalumnae
ENSRNOG00000001256	Atxn2	99	67.919	ENSLOCG00000007880	atxn2	97	71.975	Lepisosteus_oculatus
ENSRNOG00000001256	Atxn2	99	93.209	ENSLAFG00000007416	ATXN2	100	93.209	Loxodonta_africana
ENSRNOG00000001256	Atxn2	98	93.820	ENSMFAG00000000374	ATXN2	100	91.713	Macaca_fascicularis
ENSRNOG00000001256	Atxn2	97	93.720	ENSMMUG00000002226	ATXN2	100	93.720	Macaca_mulatta
ENSRNOG00000001256	Atxn2	98	93.820	ENSMNEG00000035588	ATXN2	100	91.713	Macaca_nemestrina
ENSRNOG00000001256	Atxn2	99	93.832	ENSMLEG00000024324	ATXN2	100	93.832	Mandrillus_leucophaeus
ENSRNOG00000001256	Atxn2	93	69.524	ENSMAMG00000019160	atxn2	95	69.903	Mastacembelus_armatus
ENSRNOG00000001256	Atxn2	94	69.524	ENSMZEG00005008476	atxn2	97	69.903	Maylandia_zebra
ENSRNOG00000001256	Atxn2	99	86.059	ENSMGAG00000005288	ATXN2	100	85.595	Meleagris_gallopavo
ENSRNOG00000001256	Atxn2	63	92.342	ENSMAUG00000008223	-	100	92.342	Mesocricetus_auratus
ENSRNOG00000001256	Atxn2	97	94.291	ENSMICG00000013541	ATXN2	100	94.291	Microcebus_murinus
ENSRNOG00000001256	Atxn2	84	92.654	ENSMOCG00000005219	Atxn2	100	91.753	Microtus_ochrogaster
ENSRNOG00000001256	Atxn2	95	56.908	ENSMMOG00000013189	atxn2	95	64.615	Mola_mola
ENSRNOG00000001256	Atxn2	99	86.461	ENSMODG00000012221	ATXN2	84	86.461	Monodelphis_domestica
ENSRNOG00000001256	Atxn2	98	48.335	ENSMALG00000018529	atxn2	96	69.677	Monopterus_albus
ENSRNOG00000001256	Atxn2	99	97.122	MGP_CAROLIEiJ_G0027692	Atxn2	95	97.122	Mus_caroli
ENSRNOG00000001256	Atxn2	99	97.032	ENSMUSG00000042605	Atxn2	100	94.126	Mus_musculus
ENSRNOG00000001256	Atxn2	99	86.537	MGP_PahariEiJ_G0024272	Atxn2	100	92.364	Mus_pahari
ENSRNOG00000001256	Atxn2	99	97.220	MGP_SPRETEiJ_G0028690	Atxn2	100	94.135	Mus_spretus
ENSRNOG00000001256	Atxn2	99	91.985	ENSMPUG00000002212	ATXN2	100	91.985	Mustela_putorius_furo
ENSRNOG00000001256	Atxn2	99	92.279	ENSMLUG00000015559	ATXN2	100	92.279	Myotis_lucifugus
ENSRNOG00000001256	Atxn2	96	59.944	ENSNBRG00000015794	atxn2	99	58.480	Neolamprologus_brichardi
ENSRNOG00000001256	Atxn2	98	94.234	ENSNLEG00000000484	ATXN2	100	91.993	Nomascus_leucogenys
ENSRNOG00000001256	Atxn2	83	97.727	ENSMEUG00000012244	-	85	97.727	Notamacropus_eugenii
ENSRNOG00000001256	Atxn2	98	88.763	ENSOPRG00000014599	ATXN2	100	88.857	Ochotona_princeps
ENSRNOG00000001256	Atxn2	97	92.776	ENSODEG00000010798	ATXN2	100	92.776	Octodon_degus
ENSRNOG00000001256	Atxn2	98	59.243	ENSONIG00000014521	atxn2	98	58.162	Oreochromis_niloticus
ENSRNOG00000001256	Atxn2	85	88.095	ENSOANG00000004796	ATXN2	100	88.095	Ornithorhynchus_anatinus
ENSRNOG00000001256	Atxn2	99	91.993	ENSOCUG00000002855	ATXN2	70	92.086	Oryctolagus_cuniculus
ENSRNOG00000001256	Atxn2	89	59.836	ENSORLG00000003606	atxn2	99	68.858	Oryzias_latipes
ENSRNOG00000001256	Atxn2	98	47.534	ENSORLG00020000785	atxn2	97	67.834	Oryzias_latipes_hni
ENSRNOG00000001256	Atxn2	98	47.748	ENSORLG00015012345	atxn2	97	67.834	Oryzias_latipes_hsok
ENSRNOG00000001256	Atxn2	98	94.101	ENSOGAG00000000609	ATXN2	83	94.035	Otolemur_garnettii
ENSRNOG00000001256	Atxn2	99	93.767	ENSOARG00000018223	ATXN2	100	93.767	Ovis_aries
ENSRNOG00000001256	Atxn2	99	93.536	ENSPPAG00000028043	ATXN2	100	94.006	Pan_paniscus
ENSRNOG00000001256	Atxn2	98	94.096	ENSPPRG00000003573	ATXN2	100	90.181	Panthera_pardus
ENSRNOG00000001256	Atxn2	99	94.206	ENSPTIG00000021122	ATXN2	100	94.101	Panthera_tigris_altaica
ENSRNOG00000001256	Atxn2	98	94.329	ENSPTRG00000029540	ATXN2	100	94.101	Pan_troglodytes
ENSRNOG00000001256	Atxn2	98	93.951	ENSPANG00000017168	ATXN2	100	91.713	Papio_anubis
ENSRNOG00000001256	Atxn2	98	61.625	ENSPKIG00000023134	atxn2	96	61.158	Paramormyrops_kingsleyae
ENSRNOG00000001256	Atxn2	99	85.102	ENSPSIG00000002353	-	100	84.637	Pelodiscus_sinensis
ENSRNOG00000001256	Atxn2	97	55.906	ENSPMGG00000005074	atxn2	100	55.795	Periophthalmus_magnuspinnatus
ENSRNOG00000001256	Atxn2	84	93.421	ENSPEMG00000015340	Atxn2	100	92.784	Peromyscus_maniculatus_bairdii
ENSRNOG00000001256	Atxn2	75	54.915	ENSPMAG00000007157	atxn2	85	54.915	Petromyzon_marinus
ENSRNOG00000001256	Atxn2	60	82.897	ENSPCIG00000006165	-	99	82.026	Phascolarctos_cinereus
ENSRNOG00000001256	Atxn2	91	64.615	ENSPFOG00000005857	atxn2	97	51.616	Poecilia_formosa
ENSRNOG00000001256	Atxn2	95	67.568	ENSPLAG00000015241	atxn2	97	69.903	Poecilia_latipinna
ENSRNOG00000001256	Atxn2	95	66.967	ENSPMEG00000016681	atxn2	97	69.256	Poecilia_mexicana
ENSRNOG00000001256	Atxn2	95	66.864	ENSPREG00000014825	atxn2	97	69.108	Poecilia_reticulata
ENSRNOG00000001256	Atxn2	98	93.914	ENSPPYG00000004963	ATXN2	86	93.849	Pongo_abelii
ENSRNOG00000001256	Atxn2	75	98.413	ENSPCAG00000004216	-	57	98.413	Procavia_capensis
ENSRNOG00000001256	Atxn2	98	92.041	ENSPCOG00000022031	ATXN2	100	91.913	Propithecus_coquereli
ENSRNOG00000001256	Atxn2	98	86.704	ENSPVAG00000013179	ATXN2	82	86.673	Pteropus_vampyrus
ENSRNOG00000001256	Atxn2	56	50.080	ENSPNYG00000016981	atxn2	97	50.080	Pundamilia_nyererei
ENSRNOG00000001256	Atxn2	98	90.610	ENSRBIG00000039212	ATXN2	100	90.986	Rhinopithecus_bieti
ENSRNOG00000001256	Atxn2	99	93.832	ENSRROG00000031170	ATXN2	100	91.713	Rhinopithecus_roxellana
ENSRNOG00000001256	Atxn2	97	91.713	ENSSBOG00000031563	ATXN2	100	91.713	Saimiri_boliviensis_boliviensis
ENSRNOG00000001256	Atxn2	99	86.338	ENSSHAG00000007304	ATXN2	100	86.338	Sarcophilus_harrisii
ENSRNOG00000001256	Atxn2	97	60.316	ENSSFOG00015017229	atxn2	100	60.413	Scleropages_formosus
ENSRNOG00000001256	Atxn2	95	56.506	ENSSMAG00000004627	atxn2	97	69.427	Scophthalmus_maximus
ENSRNOG00000001256	Atxn2	95	68.788	ENSSDUG00000001223	atxn2	97	70.874	Seriola_dumerili
ENSRNOG00000001256	Atxn2	95	57.090	ENSSLDG00000019837	atxn2	100	57.380	Seriola_lalandi_dorsalis
ENSRNOG00000001256	Atxn2	93	88.525	ENSSARG00000006291	ATXN2	94	88.525	Sorex_araneus
ENSRNOG00000001256	Atxn2	98	85.460	ENSSPUG00000010317	ATXN2	92	85.258	Sphenodon_punctatus
ENSRNOG00000001256	Atxn2	93	69.841	ENSSPAG00000000377	atxn2	95	70.227	Stegastes_partitus
ENSRNOG00000001256	Atxn2	98	93.071	ENSSSCG00000009834	ATXN2	94	93.010	Sus_scrofa
ENSRNOG00000001256	Atxn2	99	80.784	ENSTGUG00000006497	ATXN2	100	72.007	Taeniopygia_guttata
ENSRNOG00000001256	Atxn2	98	55.182	ENSTRUG00000016801	atxn2	100	55.075	Takifugu_rubripes
ENSRNOG00000001256	Atxn2	86	93.846	ENSTBEG00000001985	ATXN2	89	93.846	Tupaia_belangeri
ENSRNOG00000001256	Atxn2	89	97.297	ENSTTRG00000000952	ATXN2	76	97.297	Tursiops_truncatus
ENSRNOG00000001256	Atxn2	98	93.814	ENSUAMG00000025295	ATXN2	94	93.756	Ursus_americanus
ENSRNOG00000001256	Atxn2	97	93.899	ENSUMAG00000007315	ATXN2	100	93.899	Ursus_maritimus
ENSRNOG00000001256	Atxn2	93	96.094	ENSVPAG00000005940	ATXN2	100	87.290	Vicugna_pacos
ENSRNOG00000001256	Atxn2	97	94.101	ENSVVUG00000016107	ATXN2	100	94.101	Vulpes_vulpes
ENSRNOG00000001256	Atxn2	97	76.564	ENSXETG00000020912	atxn2	100	77.124	Xenopus_tropicalis
ENSRNOG00000001256	Atxn2	55	53.883	ENSXCOG00000010001	atxn2	100	53.920	Xiphophorus_couchianus
ENSRNOG00000001256	Atxn2	95	67.267	ENSXMAG00000003481	atxn2	97	69.579	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002091	negative regulation of receptor internalization	-	IEA	Process
GO:0002091	negative regulation of receptor internalization	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005154	epidermal growth factor receptor binding	-	IEA	Function
GO:0005154	epidermal growth factor receptor binding	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005802	trans-Golgi network	-	IEA	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005844	polysome	-	IEA	Component
GO:0005844	polysome	-	ISO	Component
GO:0008022	protein C-terminus binding	-	IEA	Function
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0010603	regulation of cytoplasmic mRNA processing body assembly	21873635.	IBA	Process
GO:0021702	cerebellar Purkinje cell differentiation	-	ISO	Process
GO:0033962	cytoplasmic mRNA processing body assembly	-	IEA	Process
GO:0033962	cytoplasmic mRNA processing body assembly	-	ISO	Process
GO:0034063	stress granule assembly	21873635.	IBA	Process
GO:0034063	stress granule assembly	-	ISO	Process
GO:0040015	negative regulation of multicellular organism growth	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	IEA	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048812	neuron projection morphogenesis	-	ISO	Process
GO:0048872	homeostasis of number of cells	-	ISO	Process
GO:0050692	DBD domain binding	-	ISO	Function
GO:0050905	neuromuscular process	-	ISO	Process
GO:1990904	ribonucleoprotein complex	-	ISO	Component