EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001377 (Gene tree)
Gene ID: 360815
Gene Symbol: Ddx54
Alias: LOC360815|RGD1562539
Full Name: DEAD-box helicase 54
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 14566 bases
Position: chr12:41470557-41485122
Accession: 1562539
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001859	DBP10CT	PF08147.12	2.4e-18	1	1
ENSRNOP00000001859	ResIII	PF04851.15	8.9e-07	1	1
ENSRNOP00000001859	DEAD	PF00270.29	9.1e-50	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001859	-	3252	XM_006249397	ENSRNOP00000001859	914 (aa)	XP_006249459	D3ZHY6

Gene Model

Click here to download ENSRNOG00000001377's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001377's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001377	Ddx54	96	84.163	ENSG00000123064	DDX54	100	97.115	Homo_sapiens
ENSRNOG00000001377	Ddx54	91	62.353	ENSAPOG00000008602	ddx54	98	63.006	Acanthochromis_polyacanthus
ENSRNOG00000001377	Ddx54	92	85.967	ENSAMEG00000008775	DDX54	96	85.967	Ailuropoda_melanoleuca
ENSRNOG00000001377	Ddx54	93	62.674	ENSACIG00000019104	ddx54	98	63.146	Amphilophus_citrinellus
ENSRNOG00000001377	Ddx54	91	62.309	ENSAOCG00000008449	ddx54	98	62.341	Amphiprion_ocellaris
ENSRNOG00000001377	Ddx54	91	62.309	ENSAPEG00000014287	ddx54	98	62.341	Amphiprion_percula
ENSRNOG00000001377	Ddx54	91	62.297	ENSATEG00000018529	ddx54	97	62.731	Anabas_testudineus
ENSRNOG00000001377	Ddx54	89	70.366	ENSAPLG00000013191	DDX54	100	70.732	Anas_platyrhynchos
ENSRNOG00000001377	Ddx54	88	69.193	ENSACAG00000004703	DDX54	96	69.193	Anolis_carolinensis
ENSRNOG00000001377	Ddx54	85	76.410	ENSANAG00000032241	-	95	76.203	Aotus_nancymaae
ENSRNOG00000001377	Ddx54	96	74.128	ENSANAG00000032761	-	100	73.903	Aotus_nancymaae
ENSRNOG00000001377	Ddx54	93	62.645	ENSACLG00000013176	ddx54	98	62.747	Astatotilapia_calliptera
ENSRNOG00000001377	Ddx54	92	61.260	ENSAMXG00000009189	ddx54	98	62.280	Astyanax_mexicanus
ENSRNOG00000001377	Ddx54	96	84.032	ENSBTAG00000011930	DDX54	95	85.147	Bos_taurus
ENSRNOG00000001377	Ddx54	83	44.459	WBGene00022378	Y94H6A.5	95	43.773	Caenorhabditis_elegans
ENSRNOG00000001377	Ddx54	85	84.898	ENSCJAG00000010039	DDX54	88	84.417	Callithrix_jacchus
ENSRNOG00000001377	Ddx54	62	79.791	ENSCAFG00000009029	DDX54	99	80.662	Canis_familiaris
ENSRNOG00000001377	Ddx54	96	83.787	ENSCAFG00020017643	DDX54	100	84.354	Canis_lupus_dingo
ENSRNOG00000001377	Ddx54	96	82.127	ENSCHIG00000026798	DDX54	100	82.540	Capra_hircus
ENSRNOG00000001377	Ddx54	95	78.733	ENSTSYG00000007898	DDX54	94	82.709	Carlito_syrichta
ENSRNOG00000001377	Ddx54	89	83.211	ENSCAPG00000001482	DDX54	95	83.333	Cavia_aperea
ENSRNOG00000001377	Ddx54	96	84.205	ENSCPOG00000020649	DDX54	100	84.318	Cavia_porcellus
ENSRNOG00000001377	Ddx54	96	83.768	ENSCCAG00000022625	DDX54	100	84.222	Cebus_capucinus
ENSRNOG00000001377	Ddx54	96	83.842	ENSCATG00000041943	DDX54	100	84.407	Cercocebus_atys
ENSRNOG00000001377	Ddx54	96	83.181	ENSCLAG00000010748	DDX54	100	83.181	Chinchilla_lanigera
ENSRNOG00000001377	Ddx54	97	78.232	ENSCSAG00000002432	DDX54	98	78.564	Chlorocebus_sabaeus
ENSRNOG00000001377	Ddx54	72	64.837	ENSCPBG00000017982	DDX54	85	66.263	Chrysemys_picta_bellii
ENSRNOG00000001377	Ddx54	82	51.680	ENSCING00000004789	-	94	51.527	Ciona_intestinalis
ENSRNOG00000001377	Ddx54	84	51.226	ENSCSAVG00000008916	-	100	65.257	Ciona_savignyi
ENSRNOG00000001377	Ddx54	84	96.186	ENSCANG00000020637	DDX54	100	96.186	Colobus_angolensis_palliatus
ENSRNOG00000001377	Ddx54	96	91.895	ENSCGRG00001014803	Ddx54	100	91.895	Cricetulus_griseus_chok1gshd
ENSRNOG00000001377	Ddx54	96	91.895	ENSCGRG00000002827	Ddx54	100	91.895	Cricetulus_griseus_crigri
ENSRNOG00000001377	Ddx54	91	60.706	ENSCSEG00000016462	ddx54	98	61.272	Cynoglossus_semilaevis
ENSRNOG00000001377	Ddx54	93	60.487	ENSCVAG00000022404	ddx54	98	60.976	Cyprinodon_variegatus
ENSRNOG00000001377	Ddx54	92	62.718	ENSDARG00000105286	ddx54	98	63.152	Danio_rerio
ENSRNOG00000001377	Ddx54	96	82.857	ENSDNOG00000032913	DDX54	100	83.219	Dasypus_novemcinctus
ENSRNOG00000001377	Ddx54	76	82.808	ENSDORG00000003399	Ddx54	95	83.095	Dipodomys_ordii
ENSRNOG00000001377	Ddx54	85	43.171	FBgn0052344	CG32344	99	42.421	Drosophila_melanogaster
ENSRNOG00000001377	Ddx54	76	58.065	ENSEBUG00000008886	ddx54	97	58.993	Eptatretus_burgeri
ENSRNOG00000001377	Ddx54	97	75.697	ENSEASG00005009501	DDX54	100	74.844	Equus_asinus_asinus
ENSRNOG00000001377	Ddx54	96	83.352	ENSECAG00000012890	DDX54	100	84.258	Equus_caballus
ENSRNOG00000001377	Ddx54	65	94.937	ENSEEUG00000008296	-	74	94.937	Erinaceus_europaeus
ENSRNOG00000001377	Ddx54	93	61.416	ENSELUG00000013533	ddx54	98	62.113	Esox_lucius
ENSRNOG00000001377	Ddx54	96	83.182	ENSFCAG00000027806	DDX54	100	83.864	Felis_catus
ENSRNOG00000001377	Ddx54	87	71.446	ENSFALG00000007737	DDX54	100	71.446	Ficedula_albicollis
ENSRNOG00000001377	Ddx54	86	88.720	ENSFDAG00000019953	DDX54	100	88.323	Fukomys_damarensis
ENSRNOG00000001377	Ddx54	93	60.532	ENSFHEG00000018425	ddx54	98	60.627	Fundulus_heteroclitus
ENSRNOG00000001377	Ddx54	90	58.831	ENSGMOG00000011746	ddx54	95	61.665	Gadus_morhua
ENSRNOG00000001377	Ddx54	89	70.617	ENSGALG00000007490	DDX54	97	70.617	Gallus_gallus
ENSRNOG00000001377	Ddx54	91	60.570	ENSGAFG00000010336	ddx54	97	60.404	Gambusia_affinis
ENSRNOG00000001377	Ddx54	89	59.647	ENSGACG00000016793	ddx54	95	60.592	Gasterosteus_aculeatus
ENSRNOG00000001377	Ddx54	90	70.388	ENSGAGG00000022803	DDX54	100	70.896	Gopherus_agassizii
ENSRNOG00000001377	Ddx54	96	84.294	ENSGGOG00000010414	DDX54	100	84.520	Gorilla_gorilla
ENSRNOG00000001377	Ddx54	96	84.642	ENSHGLG00000014411	DDX54	100	84.755	Heterocephalus_glaber_female
ENSRNOG00000001377	Ddx54	96	84.642	ENSHGLG00100018511	DDX54	100	84.755	Heterocephalus_glaber_male
ENSRNOG00000001377	Ddx54	92	61.249	ENSHCOG00000019287	ddx54	97	62.016	Hippocampus_comes
ENSRNOG00000001377	Ddx54	92	61.098	ENSIPUG00000015556	Ddx54	98	62.049	Ictalurus_punctatus
ENSRNOG00000001377	Ddx54	84	85.071	ENSSTOG00000004068	DDX54	100	85.586	Ictidomys_tridecemlineatus
ENSRNOG00000001377	Ddx54	94	87.022	ENSJJAG00000015712	Ddx54	100	87.314	Jaculus_jaculus
ENSRNOG00000001377	Ddx54	93	59.657	ENSKMAG00000017520	ddx54	98	61.720	Kryptolebias_marmoratus
ENSRNOG00000001377	Ddx54	92	58.428	ENSLBEG00000019480	ddx54	98	60.347	Labrus_bergylta
ENSRNOG00000001377	Ddx54	90	65.793	ENSLACG00000008944	DDX54	99	63.245	Latimeria_chalumnae
ENSRNOG00000001377	Ddx54	92	64.118	ENSLOCG00000008485	ddx54	98	64.421	Lepisosteus_oculatus
ENSRNOG00000001377	Ddx54	85	73.599	ENSLAFG00000027782	DDX54	100	74.222	Loxodonta_africana
ENSRNOG00000001377	Ddx54	96	83.634	ENSMFAG00000043636	DDX54	100	84.086	Macaca_fascicularis
ENSRNOG00000001377	Ddx54	96	82.844	ENSMMUG00000021795	DDX54	100	83.878	Macaca_mulatta
ENSRNOG00000001377	Ddx54	96	76.524	ENSMNEG00000043605	DDX54	100	77.565	Macaca_nemestrina
ENSRNOG00000001377	Ddx54	96	79.007	ENSMLEG00000038981	DDX54	99	80.158	Mandrillus_leucophaeus
ENSRNOG00000001377	Ddx54	93	61.768	ENSMAMG00000012784	ddx54	98	62.025	Mastacembelus_armatus
ENSRNOG00000001377	Ddx54	93	62.471	ENSMZEG00005018773	ddx54	98	62.573	Maylandia_zebra
ENSRNOG00000001377	Ddx54	89	69.964	ENSMGAG00000009183	DDX54	100	69.964	Meleagris_gallopavo
ENSRNOG00000001377	Ddx54	96	90.982	ENSMAUG00000011051	Ddx54	100	91.667	Mesocricetus_auratus
ENSRNOG00000001377	Ddx54	96	83.845	ENSMICG00000012217	DDX54	100	84.738	Microcebus_murinus
ENSRNOG00000001377	Ddx54	96	90.868	ENSMOCG00000010835	Ddx54	100	91.438	Microtus_ochrogaster
ENSRNOG00000001377	Ddx54	90	61.252	ENSMMOG00000009634	ddx54	98	61.085	Mola_mola
ENSRNOG00000001377	Ddx54	91	76.527	ENSMODG00000003413	DDX54	99	77.088	Monodelphis_domestica
ENSRNOG00000001377	Ddx54	92	62.911	ENSMALG00000022098	ddx54	98	63.201	Monopterus_albus
ENSRNOG00000001377	Ddx54	96	94.869	MGP_CAROLIEiJ_G0027665	Ddx54	100	95.097	Mus_caroli
ENSRNOG00000001377	Ddx54	96	95.423	ENSMUSG00000029599	Ddx54	100	95.423	Mus_musculus
ENSRNOG00000001377	Ddx54	96	95.211	MGP_PahariEiJ_G0024247	Ddx54	100	95.211	Mus_pahari
ENSRNOG00000001377	Ddx54	96	95.091	MGP_SPRETEiJ_G0028665	Ddx54	100	95.091	Mus_spretus
ENSRNOG00000001377	Ddx54	96	83.428	ENSMPUG00000002574	DDX54	100	84.354	Mustela_putorius_furo
ENSRNOG00000001377	Ddx54	96	87.500	ENSNGAG00000021313	Ddx54	100	87.727	Nannospalax_galili
ENSRNOG00000001377	Ddx54	63	78.500	ENSNBRG00000005588	ddx54	73	78.841	Neolamprologus_brichardi
ENSRNOG00000001377	Ddx54	96	84.563	ENSNLEG00000000162	DDX54	100	84.563	Nomascus_leucogenys
ENSRNOG00000001377	Ddx54	76	76.327	ENSMEUG00000015392	DDX54	99	76.990	Notamacropus_eugenii
ENSRNOG00000001377	Ddx54	87	79.545	ENSOPRG00000012000	DDX54	92	77.483	Ochotona_princeps
ENSRNOG00000001377	Ddx54	96	80.774	ENSODEG00000014863	DDX54	100	80.887	Octodon_degus
ENSRNOG00000001377	Ddx54	96	83.051	ENSOCUG00000008932	DDX54	100	83.503	Oryctolagus_cuniculus
ENSRNOG00000001377	Ddx54	92	61.072	ENSORLG00000007385	ddx54	98	61.422	Oryzias_latipes
ENSRNOG00000001377	Ddx54	92	61.305	ENSORLG00020000858	ddx54	98	61.655	Oryzias_latipes_hni
ENSRNOG00000001377	Ddx54	93	60.694	ENSORLG00015006956	ddx54	98	61.422	Oryzias_latipes_hsok
ENSRNOG00000001377	Ddx54	90	62.605	ENSOMEG00000003663	ddx54	98	62.471	Oryzias_melastigma
ENSRNOG00000001377	Ddx54	96	84.624	ENSOGAG00000004210	DDX54	100	85.194	Otolemur_garnettii
ENSRNOG00000001377	Ddx54	96	83.107	ENSOARG00000008363	DDX54	100	83.523	Ovis_aries
ENSRNOG00000001377	Ddx54	96	82.976	ENSPPAG00000042178	DDX54	100	83.896	Pan_paniscus
ENSRNOG00000001377	Ddx54	96	81.705	ENSPPRG00000005223	DDX54	100	82.520	Panthera_pardus
ENSRNOG00000001377	Ddx54	70	74.334	ENSPTIG00000019728	DDX54	86	74.334	Panthera_tigris_altaica
ENSRNOG00000001377	Ddx54	96	83.597	ENSPTRG00000005483	DDX54	100	84.294	Pan_troglodytes
ENSRNOG00000001377	Ddx54	96	83.070	ENSPANG00000008883	DDX54	100	84.104	Papio_anubis
ENSRNOG00000001377	Ddx54	92	63.318	ENSPKIG00000018272	ddx54	96	63.318	Paramormyrops_kingsleyae
ENSRNOG00000001377	Ddx54	51	80.851	ENSPSIG00000005055	DDX54	96	80.679	Pelodiscus_sinensis
ENSRNOG00000001377	Ddx54	89	59.804	ENSPMGG00000010988	ddx54	99	59.804	Periophthalmus_magnuspinnatus
ENSRNOG00000001377	Ddx54	96	92.808	ENSPEMG00000016701	Ddx54	100	92.808	Peromyscus_maniculatus_bairdii
ENSRNOG00000001377	Ddx54	93	60.606	ENSPFOG00000019822	ddx54	97	61.792	Poecilia_formosa
ENSRNOG00000001377	Ddx54	93	59.722	ENSPLAG00000004530	ddx54	97	60.981	Poecilia_latipinna
ENSRNOG00000001377	Ddx54	93	59.606	ENSPMEG00000010803	ddx54	97	60.864	Poecilia_mexicana
ENSRNOG00000001377	Ddx54	91	60.520	ENSPREG00000014372	ddx54	97	60.610	Poecilia_reticulata
ENSRNOG00000001377	Ddx54	96	83.296	ENSPPYG00000004984	DDX54	100	84.199	Pongo_abelii
ENSRNOG00000001377	Ddx54	96	78.539	ENSPCAG00000008462	DDX54	100	78.539	Procavia_capensis
ENSRNOG00000001377	Ddx54	96	84.835	ENSPCOG00000006050	DDX54	100	85.535	Propithecus_coquereli
ENSRNOG00000001377	Ddx54	89	89.003	ENSPVAG00000017347	DDX54	100	73.666	Pteropus_vampyrus
ENSRNOG00000001377	Ddx54	92	59.393	ENSPNAG00000014459	ddx54	96	64.396	Pygocentrus_nattereri
ENSRNOG00000001377	Ddx54	96	82.677	ENSRBIG00000032535	DDX54	100	83.878	Rhinopithecus_bieti
ENSRNOG00000001377	Ddx54	96	79.143	ENSRROG00000029557	DDX54	100	80.180	Rhinopithecus_roxellana
ENSRNOG00000001377	Ddx54	83	36.333	YDL031W	-	92	35.453	Saccharomyces_cerevisiae
ENSRNOG00000001377	Ddx54	96	83.447	ENSSBOG00000028194	DDX54	100	84.240	Saimiri_boliviensis_boliviensis
ENSRNOG00000001377	Ddx54	89	72.662	ENSSHAG00000015646	DDX54	100	74.848	Sarcophilus_harrisii
ENSRNOG00000001377	Ddx54	92	63.263	ENSSFOG00015014981	ddx54	98	63.263	Scleropages_formosus
ENSRNOG00000001377	Ddx54	90	59.529	ENSSMAG00000003210	ddx54	98	59.562	Scophthalmus_maximus
ENSRNOG00000001377	Ddx54	90	60.188	ENSSDUG00000004474	ddx54	98	60.739	Seriola_dumerili
ENSRNOG00000001377	Ddx54	91	59.277	ENSSLDG00000010380	ddx54	98	60.508	Seriola_lalandi_dorsalis
ENSRNOG00000001377	Ddx54	92	69.359	ENSSPUG00000014141	DDX54	97	69.395	Sphenodon_punctatus
ENSRNOG00000001377	Ddx54	87	62.219	ENSSPAG00000022918	ddx54	97	62.287	Stegastes_partitus
ENSRNOG00000001377	Ddx54	96	84.563	ENSSSCG00000009876	DDX54	100	84.904	Sus_scrofa
ENSRNOG00000001377	Ddx54	88	70.516	ENSTGUG00000009126	DDX54	100	70.516	Taeniopygia_guttata
ENSRNOG00000001377	Ddx54	91	59.700	ENSTRUG00000014939	ddx54	97	60.981	Takifugu_rubripes
ENSRNOG00000001377	Ddx54	92	62.485	ENSTNIG00000009037	ddx54	98	62.692	Tetraodon_nigroviridis
ENSRNOG00000001377	Ddx54	70	93.705	ENSTBEG00000003783	DDX54	80	93.705	Tupaia_belangeri
ENSRNOG00000001377	Ddx54	92	80.724	ENSTTRG00000016678	DDX54	100	80.904	Tursiops_truncatus
ENSRNOG00000001377	Ddx54	99	82.225	ENSUAMG00000028387	DDX54	100	83.955	Ursus_americanus
ENSRNOG00000001377	Ddx54	80	88.532	ENSUMAG00000010245	DDX54	95	94.026	Ursus_maritimus
ENSRNOG00000001377	Ddx54	96	84.014	ENSVVUG00000010212	DDX54	100	84.467	Vulpes_vulpes
ENSRNOG00000001377	Ddx54	94	63.225	ENSXETG00000016410	ddx54	96	65.488	Xenopus_tropicalis
ENSRNOG00000001377	Ddx54	91	61.131	ENSXCOG00000002909	ddx54	97	61.393	Xiphophorus_couchianus
ENSRNOG00000001377	Ddx54	91	61.059	ENSXMAG00000005312	ddx54	97	61.059	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003714	transcription corepressor activity	-	IEA	Function
GO:0003714	transcription corepressor activity	-	ISO	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006396	RNA processing	-	ISO	Process
GO:0016070	RNA metabolic process	-	ISO	Process
GO:0030331	estrogen receptor binding	-	IEA	Function
GO:0030331	estrogen receptor binding	-	ISO	Function
GO:1903507	negative regulation of nucleic acid-templated transcription	-	IEA	Process