EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001397 (Gene tree)
Gene ID: 304512
Gene Symbol: Rbm19
Alias: LOC304512
Full Name: RNA binding motif protein 19
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 86218 bases
Position: chr12:41907740-41993957
Accession: 1308928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001891	RRM_1	PF00076.22	7.1e-87	1	5
ENSRNOP00000001891	RRM_1	PF00076.22	7.1e-87	2	5
ENSRNOP00000001891	RRM_1	PF00076.22	7.1e-87	3	5
ENSRNOP00000001891	RRM_1	PF00076.22	7.1e-87	4	5
ENSRNOP00000001891	RRM_1	PF00076.22	7.1e-87	5	5

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001891	-	4295	XM_003751194	ENSRNOP00000001891	955 (aa)	XP_003751242	D3ZHU8

Gene Model

Click here to download ENSRNOG00000001397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001397's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000001397	Rbm19	68	33.333	ENSRNOG00000014527	Pabpc2	59	33.333
ENSRNOG00000001397	Rbm19	74	38.158	ENSRNOG00000017367	Pabpc6	58	38.158
ENSRNOG00000001397	Rbm19	74	33.333	ENSRNOG00000008639	Pabpc1	69	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001397	Rbm19	100	81.508	ENSG00000122965	RBM19	98	89.908	Homo_sapiens
ENSRNOG00000001397	Rbm19	99	58.264	ENSAPOG00000010507	rbm19	99	58.420	Acanthochromis_polyacanthus
ENSRNOG00000001397	Rbm19	100	77.034	ENSAMEG00000008544	RBM19	100	76.931	Ailuropoda_melanoleuca
ENSRNOG00000001397	Rbm19	97	59.617	ENSACIG00000017780	rbm19	99	59.405	Amphilophus_citrinellus
ENSRNOG00000001397	Rbm19	99	59.770	ENSAOCG00000008554	rbm19	99	59.352	Amphiprion_ocellaris
ENSRNOG00000001397	Rbm19	97	57.917	ENSAPEG00000022381	rbm19	96	57.311	Amphiprion_percula
ENSRNOG00000001397	Rbm19	97	58.966	ENSATEG00000007000	rbm19	99	58.272	Anabas_testudineus
ENSRNOG00000001397	Rbm19	92	61.488	ENSAPLG00000015319	RBM19	99	61.294	Anas_platyrhynchos
ENSRNOG00000001397	Rbm19	99	65.552	ENSACAG00000005065	RBM19	99	65.784	Anolis_carolinensis
ENSRNOG00000001397	Rbm19	100	80.805	ENSANAG00000024136	RBM19	100	81.011	Aotus_nancymaae
ENSRNOG00000001397	Rbm19	99	56.504	ENSACLG00000001399	rbm19	99	56.445	Astatotilapia_calliptera
ENSRNOG00000001397	Rbm19	88	61.675	ENSAMXG00000017073	rbm19	93	60.225	Astyanax_mexicanus
ENSRNOG00000001397	Rbm19	100	80.104	ENSBTAG00000031824	RBM19	100	80.702	Bos_taurus
ENSRNOG00000001397	Rbm19	83	43.066	WBGene00004315	rbd-1	99	44.072	Caenorhabditis_elegans
ENSRNOG00000001397	Rbm19	100	80.475	ENSCJAG00000009798	RBM19	100	80.682	Callithrix_jacchus
ENSRNOG00000001397	Rbm19	100	79.132	ENSCAFG00000009146	RBM19	99	79.029	Canis_familiaris
ENSRNOG00000001397	Rbm19	100	79.236	ENSCAFG00020017862	RBM19	99	79.132	Canis_lupus_dingo
ENSRNOG00000001397	Rbm19	100	80.435	ENSCHIG00000014917	RBM19	100	80.952	Capra_hircus
ENSRNOG00000001397	Rbm19	89	78.696	ENSTSYG00000007207	RBM19	96	79.118	Carlito_syrichta
ENSRNOG00000001397	Rbm19	99	78.782	ENSCAPG00000006869	RBM19	99	79.307	Cavia_aperea
ENSRNOG00000001397	Rbm19	100	79.707	ENSCPOG00000026629	RBM19	100	80.289	Cavia_porcellus
ENSRNOG00000001397	Rbm19	100	80.475	ENSCCAG00000021665	-	100	80.682	Cebus_capucinus
ENSRNOG00000001397	Rbm19	84	72.950	ENSCCAG00000026637	-	99	72.950	Cebus_capucinus
ENSRNOG00000001397	Rbm19	99	81.172	ENSCATG00000035841	RBM19	100	81.381	Cercocebus_atys
ENSRNOG00000001397	Rbm19	100	79.590	ENSCLAG00000009965	RBM19	100	80.410	Chinchilla_lanigera
ENSRNOG00000001397	Rbm19	100	76.908	ENSCSAG00000002352	RBM19	96	77.943	Chlorocebus_sabaeus
ENSRNOG00000001397	Rbm19	99	67.835	ENSCPBG00000011990	RBM19	99	68.210	Chrysemys_picta_bellii
ENSRNOG00000001397	Rbm19	80	49.766	ENSCING00000023076	-	95	48.858	Ciona_intestinalis
ENSRNOG00000001397	Rbm19	100	80.888	ENSCANG00000035927	RBM19	100	81.095	Colobus_angolensis_palliatus
ENSRNOG00000001397	Rbm19	100	90.282	ENSCGRG00001000323	Rbm19	100	90.282	Cricetulus_griseus_chok1gshd
ENSRNOG00000001397	Rbm19	100	90.282	ENSCGRG00000010371	Rbm19	100	90.282	Cricetulus_griseus_crigri
ENSRNOG00000001397	Rbm19	99	58.702	ENSCSEG00000017436	rbm19	99	58.635	Cynoglossus_semilaevis
ENSRNOG00000001397	Rbm19	99	57.054	ENSCVAG00000000300	rbm19	100	58.031	Cyprinodon_variegatus
ENSRNOG00000001397	Rbm19	99	58.897	ENSDARG00000042590	rbm19	99	58.273	Danio_rerio
ENSRNOG00000001397	Rbm19	99	77.339	ENSDNOG00000024534	RBM19	96	77.985	Dasypus_novemcinctus
ENSRNOG00000001397	Rbm19	97	76.369	ENSDORG00000008549	Rbm19	100	76.155	Dipodomys_ordii
ENSRNOG00000001397	Rbm19	66	43.385	FBgn0036018	CG3335	96	38.900	Drosophila_melanogaster
ENSRNOG00000001397	Rbm19	58	94.203	ENSETEG00000016887	-	59	94.203	Echinops_telfairi
ENSRNOG00000001397	Rbm19	84	48.232	ENSEBUG00000008521	-	94	47.667	Eptatretus_burgeri
ENSRNOG00000001397	Rbm19	100	80.599	ENSEASG00005009452	RBM19	100	80.888	Equus_asinus_asinus
ENSRNOG00000001397	Rbm19	100	80.433	ENSECAG00000023716	RBM19	100	80.722	Equus_caballus
ENSRNOG00000001397	Rbm19	99	57.712	ENSELUG00000012561	rbm19	99	58.240	Esox_lucius
ENSRNOG00000001397	Rbm19	100	78.112	ENSFCAG00000002962	RBM19	99	78.838	Felis_catus
ENSRNOG00000001397	Rbm19	98	64.316	ENSFALG00000007768	RBM19	99	63.795	Ficedula_albicollis
ENSRNOG00000001397	Rbm19	100	79.335	ENSFDAG00000004629	RBM19	100	79.751	Fukomys_damarensis
ENSRNOG00000001397	Rbm19	99	57.867	ENSFHEG00000012578	rbm19	99	57.704	Fundulus_heteroclitus
ENSRNOG00000001397	Rbm19	97	56.522	ENSGMOG00000013120	rbm19	100	56.139	Gadus_morhua
ENSRNOG00000001397	Rbm19	97	65.245	ENSGALG00000008289	RBM19	99	65.377	Gallus_gallus
ENSRNOG00000001397	Rbm19	99	58.054	ENSGAFG00000012337	rbm19	99	56.965	Gambusia_affinis
ENSRNOG00000001397	Rbm19	97	58.448	ENSGACG00000009462	rbm19	100	58.431	Gasterosteus_aculeatus
ENSRNOG00000001397	Rbm19	62	73.109	ENSGAGG00000019457	RBM19	99	73.613	Gopherus_agassizii
ENSRNOG00000001397	Rbm19	100	81.612	ENSGGOG00000007371	RBM19	100	81.818	Gorilla_gorilla
ENSRNOG00000001397	Rbm19	99	57.158	ENSHBUG00000009047	rbm19	99	58.273	Haplochromis_burtoni
ENSRNOG00000001397	Rbm19	100	79.002	ENSHGLG00000010899	RBM19	100	79.106	Heterocephalus_glaber_female
ENSRNOG00000001397	Rbm19	100	78.860	ENSHGLG00100017936	RBM19	100	78.964	Heterocephalus_glaber_male
ENSRNOG00000001397	Rbm19	99	59.423	ENSHCOG00000016446	rbm19	99	58.264	Hippocampus_comes
ENSRNOG00000001397	Rbm19	99	58.428	ENSIPUG00000023849	rbm19	99	57.246	Ictalurus_punctatus
ENSRNOG00000001397	Rbm19	99	59.581	ENSKMAG00000014807	rbm19	99	59.791	Kryptolebias_marmoratus
ENSRNOG00000001397	Rbm19	99	57.143	ENSLBEG00000012897	rbm19	99	55.648	Labrus_bergylta
ENSRNOG00000001397	Rbm19	71	59.788	ENSLACG00000012030	RBM19	94	60.350	Latimeria_chalumnae
ENSRNOG00000001397	Rbm19	99	61.713	ENSLOCG00000008341	rbm19	100	61.626	Lepisosteus_oculatus
ENSRNOG00000001397	Rbm19	97	77.804	ENSLAFG00000004187	RBM19	100	78.129	Loxodonta_africana
ENSRNOG00000001397	Rbm19	100	81.508	ENSMFAG00000046091	RBM19	100	78.409	Macaca_fascicularis
ENSRNOG00000001397	Rbm19	100	81.612	ENSMMUG00000010496	RBM19	100	81.818	Macaca_mulatta
ENSRNOG00000001397	Rbm19	100	75.723	ENSMNEG00000028452	RBM19	99	80.165	Macaca_nemestrina
ENSRNOG00000001397	Rbm19	100	79.034	ENSMLEG00000034550	RBM19	100	79.239	Mandrillus_leucophaeus
ENSRNOG00000001397	Rbm19	99	60.166	ENSMAMG00000014397	rbm19	99	59.649	Mastacembelus_armatus
ENSRNOG00000001397	Rbm19	99	59.609	ENSMZEG00005016607	rbm19	99	60.477	Maylandia_zebra
ENSRNOG00000001397	Rbm19	96	55.816	ENSMGAG00000010087	RBM19	99	55.696	Meleagris_gallopavo
ENSRNOG00000001397	Rbm19	100	90.596	ENSMAUG00000019290	Rbm19	100	91.014	Mesocricetus_auratus
ENSRNOG00000001397	Rbm19	100	81.095	ENSMICG00000014423	RBM19	100	81.398	Microcebus_murinus
ENSRNOG00000001397	Rbm19	99	56.980	ENSMMOG00000017839	rbm19	99	56.082	Mola_mola
ENSRNOG00000001397	Rbm19	99	72.140	ENSMODG00000003597	RBM19	99	73.061	Monodelphis_domestica
ENSRNOG00000001397	Rbm19	99	57.829	ENSMALG00000012647	rbm19	99	58.377	Monopterus_albus
ENSRNOG00000001397	Rbm19	100	93.730	MGP_CAROLIEiJ_G0027656	Rbm19	100	93.835	Mus_caroli
ENSRNOG00000001397	Rbm19	100	93.927	ENSMUSG00000029594	Rbm19	100	93.927	Mus_musculus
ENSRNOG00000001397	Rbm19	100	94.031	MGP_PahariEiJ_G0024238	Rbm19	100	94.031	Mus_pahari
ENSRNOG00000001397	Rbm19	100	93.613	MGP_SPRETEiJ_G0028656	Rbm19	100	93.613	Mus_spretus
ENSRNOG00000001397	Rbm19	100	77.446	ENSMPUG00000002694	RBM19	99	78.270	Mustela_putorius_furo
ENSRNOG00000001397	Rbm19	100	80.879	ENSMLUG00000015075	RBM19	100	81.084	Myotis_lucifugus
ENSRNOG00000001397	Rbm19	99	85.343	ENSNGAG00000009076	Rbm19	99	85.967	Nannospalax_galili
ENSRNOG00000001397	Rbm19	99	57.748	ENSNBRG00000005913	rbm19	99	59.081	Neolamprologus_brichardi
ENSRNOG00000001397	Rbm19	100	81.715	ENSNLEG00000000190	RBM19	100	81.818	Nomascus_leucogenys
ENSRNOG00000001397	Rbm19	92	68.527	ENSMEUG00000004045	RBM19	92	68.511	Notamacropus_eugenii
ENSRNOG00000001397	Rbm19	100	78.342	ENSOPRG00000012064	RBM19	100	78.446	Ochotona_princeps
ENSRNOG00000001397	Rbm19	100	76.907	ENSODEG00000012977	RBM19	100	77.743	Octodon_degus
ENSRNOG00000001397	Rbm19	99	60.524	ENSONIG00000013576	rbm19	99	59.917	Oreochromis_niloticus
ENSRNOG00000001397	Rbm19	100	76.556	ENSOCUG00000009398	RBM19	100	76.915	Oryctolagus_cuniculus
ENSRNOG00000001397	Rbm19	99	58.351	ENSORLG00000008077	rbm19	99	58.742	Oryzias_latipes
ENSRNOG00000001397	Rbm19	97	58.307	ENSORLG00020013187	rbm19	99	57.476	Oryzias_latipes_hni
ENSRNOG00000001397	Rbm19	99	58.394	ENSORLG00015001774	rbm19	99	58.021	Oryzias_latipes_hsok
ENSRNOG00000001397	Rbm19	99	58.021	ENSOMEG00000003334	rbm19	99	57.812	Oryzias_melastigma
ENSRNOG00000001397	Rbm19	93	80.626	ENSOGAG00000000602	RBM19	100	80.162	Otolemur_garnettii
ENSRNOG00000001397	Rbm19	100	79.730	ENSOARG00000006827	RBM19	100	80.952	Ovis_aries
ENSRNOG00000001397	Rbm19	100	81.818	ENSPPAG00000043712	RBM19	100	82.025	Pan_paniscus
ENSRNOG00000001397	Rbm19	100	77.697	ENSPPRG00000023027	RBM19	99	78.423	Panthera_pardus
ENSRNOG00000001397	Rbm19	100	71.503	ENSPTIG00000011096	RBM19	100	71.399	Panthera_tigris_altaica
ENSRNOG00000001397	Rbm19	100	81.612	ENSPTRG00000005494	RBM19	100	81.818	Pan_troglodytes
ENSRNOG00000001397	Rbm19	100	81.612	ENSPANG00000004795	RBM19	99	79.060	Papio_anubis
ENSRNOG00000001397	Rbm19	99	57.467	ENSPKIG00000017095	rbm19	100	58.144	Paramormyrops_kingsleyae
ENSRNOG00000001397	Rbm19	89	66.552	ENSPSIG00000008191	RBM19	99	65.753	Pelodiscus_sinensis
ENSRNOG00000001397	Rbm19	83	60.131	ENSPMGG00000019087	rbm19	100	60.401	Periophthalmus_magnuspinnatus
ENSRNOG00000001397	Rbm19	100	90.167	ENSPEMG00000018058	Rbm19	100	90.377	Peromyscus_maniculatus_bairdii
ENSRNOG00000001397	Rbm19	99	73.444	ENSPCIG00000028861	RBM19	100	73.465	Phascolarctos_cinereus
ENSRNOG00000001397	Rbm19	99	57.604	ENSPFOG00000015300	rbm19	99	58.653	Poecilia_formosa
ENSRNOG00000001397	Rbm19	99	58.135	ENSPLAG00000000059	rbm19	99	58.420	Poecilia_latipinna
ENSRNOG00000001397	Rbm19	99	56.875	ENSPMEG00000018585	rbm19	97	63.876	Poecilia_mexicana
ENSRNOG00000001397	Rbm19	99	58.506	ENSPREG00000000978	rbm19	100	57.938	Poecilia_reticulata
ENSRNOG00000001397	Rbm19	100	78.306	ENSPPYG00000004993	RBM19	100	78.409	Pongo_abelii
ENSRNOG00000001397	Rbm19	59	77.447	ENSPCAG00000005063	-	62	74.157	Procavia_capensis
ENSRNOG00000001397	Rbm19	100	81.282	ENSPCOG00000016190	RBM19	100	81.282	Propithecus_coquereli
ENSRNOG00000001397	Rbm19	99	77.870	ENSPVAG00000011618	RBM19	99	78.490	Pteropus_vampyrus
ENSRNOG00000001397	Rbm19	99	57.641	ENSPNYG00000017434	rbm19	99	58.154	Pundamilia_nyererei
ENSRNOG00000001397	Rbm19	99	58.879	ENSPNAG00000012069	rbm19	100	57.944	Pygocentrus_nattereri
ENSRNOG00000001397	Rbm19	100	80.579	ENSRBIG00000041419	RBM19	100	79.752	Rhinopithecus_bieti
ENSRNOG00000001397	Rbm19	100	80.165	ENSRROG00000031938	RBM19	100	81.095	Rhinopithecus_roxellana
ENSRNOG00000001397	Rbm19	70	39.155	YPR112C	-	87	35.902	Saccharomyces_cerevisiae
ENSRNOG00000001397	Rbm19	88	71.059	ENSSBOG00000022679	-	99	70.069	Saimiri_boliviensis_boliviensis
ENSRNOG00000001397	Rbm19	100	78.431	ENSSBOG00000021434	-	100	78.512	Saimiri_boliviensis_boliviensis
ENSRNOG00000001397	Rbm19	99	72.490	ENSSHAG00000012256	RBM19	100	71.592	Sarcophilus_harrisii
ENSRNOG00000001397	Rbm19	99	56.879	ENSSFOG00015005124	rbm19	99	57.846	Scleropages_formosus
ENSRNOG00000001397	Rbm19	99	58.903	ENSSMAG00000011828	rbm19	99	58.524	Scophthalmus_maximus
ENSRNOG00000001397	Rbm19	99	59.834	ENSSDUG00000013544	rbm19	99	59.110	Seriola_dumerili
ENSRNOG00000001397	Rbm19	87	64.478	ENSSLDG00000025413	rbm19	97	64.328	Seriola_lalandi_dorsalis
ENSRNOG00000001397	Rbm19	61	72.556	ENSSPUG00000011064	RBM19	98	72.556	Sphenodon_punctatus
ENSRNOG00000001397	Rbm19	97	57.524	ENSSPAG00000018685	rbm19	98	57.985	Stegastes_partitus
ENSRNOG00000001397	Rbm19	100	79.335	ENSSSCG00000009868	RBM19	100	80.893	Sus_scrofa
ENSRNOG00000001397	Rbm19	99	65.492	ENSTGUG00000009017	RBM19	100	65.492	Taeniopygia_guttata
ENSRNOG00000001397	Rbm19	99	58.628	ENSTRUG00000016032	rbm19	99	58.940	Takifugu_rubripes
ENSRNOG00000001397	Rbm19	77	87.582	ENSTBEG00000000703	RBM19	79	87.582	Tupaia_belangeri
ENSRNOG00000001397	Rbm19	84	77.070	ENSTTRG00000003987	RBM19	85	77.070	Tursiops_truncatus
ENSRNOG00000001397	Rbm19	99	78.184	ENSUAMG00000002076	RBM19	99	78.914	Ursus_americanus
ENSRNOG00000001397	Rbm19	99	78.564	ENSUMAG00000010816	RBM19	100	79.292	Ursus_maritimus
ENSRNOG00000001397	Rbm19	100	78.926	ENSVVUG00000007886	RBM19	99	78.926	Vulpes_vulpes
ENSRNOG00000001397	Rbm19	99	60.852	ENSXETG00000017668	rbm19	99	60.788	Xenopus_tropicalis
ENSRNOG00000001397	Rbm19	99	57.732	ENSXCOG00000016995	rbm19	100	56.212	Xiphophorus_couchianus
ENSRNOG00000001397	Rbm19	99	58.720	ENSXMAG00000007641	rbm19	99	57.692	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0040019	positive regulation of embryonic development	-	IEA	Process
GO:0040019	positive regulation of embryonic development	-	ISO	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process