EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001439 (Gene tree)
Gene ID: 685890
Gene Symbol: Srrm3
Alias: LOC685890|LOC685906|RGD1307391
Full Name: serine/arginine repetitive matrix 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 70342 bases
Position: chr12:23855400-23925741
Accession: 1587868
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000001957	cwf21	PF08312.12	2.7e-13	1	1
ENSRNOP00000001957	SRRM_C	PF15230.6	4.6e-24	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000001957	-	3549	-	ENSRNOP00000001957	648 (aa)	-	D3ZQH1

Gene Model

Click here to download ENSRNOG00000001439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001439's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001439	Srrm3	51	89.759	ENSG00000177679	SRRM3	96	88.995	Homo_sapiens
ENSRNOG00000001439	Srrm3	87	50.345	ENSACAG00000000452	SRRM3	50	62.937	Anolis_carolinensis
ENSRNOG00000001439	Srrm3	95	63.522	ENSANAG00000031983	SRRM3	60	82.133	Aotus_nancymaae
ENSRNOG00000001439	Srrm3	52	75.862	ENSBTAG00000007879	-	99	80.769	Bos_taurus
ENSRNOG00000001439	Srrm3	51	90.964	ENSCJAG00000016307	SRRM3	100	89.893	Callithrix_jacchus
ENSRNOG00000001439	Srrm3	95	79.645	ENSCAFG00000013537	SRRM3	73	89.273	Canis_familiaris
ENSRNOG00000001439	Srrm3	55	73.204	ENSCAFG00020013073	SRRM3	96	76.341	Canis_lupus_dingo
ENSRNOG00000001439	Srrm3	55	74.586	ENSCHIG00000014018	SRRM3	97	74.913	Capra_hircus
ENSRNOG00000001439	Srrm3	89	81.293	ENSCPOG00000038685	SRRM3	96	82.409	Cavia_porcellus
ENSRNOG00000001439	Srrm3	51	91.566	ENSCCAG00000033359	SRRM3	96	90.590	Cebus_capucinus
ENSRNOG00000001439	Srrm3	100	71.582	ENSCATG00000043129	SRRM3	57	84.290	Cercocebus_atys
ENSRNOG00000001439	Srrm3	89	82.765	ENSCLAG00000007682	SRRM3	100	89.516	Chinchilla_lanigera
ENSRNOG00000001439	Srrm3	53	89.943	ENSCSAG00000018140	SRRM3	97	87.910	Chlorocebus_sabaeus
ENSRNOG00000001439	Srrm3	89	94.473	ENSCGRG00001011385	Srrm3	96	94.534	Cricetulus_griseus_chok1gshd
ENSRNOG00000001439	Srrm3	89	73.765	ENSDNOG00000046922	SRRM3	96	74.163	Dasypus_novemcinctus
ENSRNOG00000001439	Srrm3	52	89.881	ENSEASG00005016840	-	89	89.881	Equus_asinus_asinus
ENSRNOG00000001439	Srrm3	52	89.851	ENSECAG00000022142	-	89	89.851	Equus_caballus
ENSRNOG00000001439	Srrm3	55	87.500	ENSFCAG00000044112	SRRM3	96	88.038	Felis_catus
ENSRNOG00000001439	Srrm3	57	91.803	ENSFDAG00000016913	SRRM3	100	93.827	Fukomys_damarensis
ENSRNOG00000001439	Srrm3	71	85.437	ENSGGOG00000036497	-	50	79.252	Gorilla_gorilla
ENSRNOG00000001439	Srrm3	78	90.060	ENSSTOG00000014181	SRRM3	100	90.323	Ictidomys_tridecemlineatus
ENSRNOG00000001439	Srrm3	89	81.911	ENSJJAG00000023441	Srrm3	99	82.055	Jaculus_jaculus
ENSRNOG00000001439	Srrm3	53	63.143	ENSMMUG00000046728	SRRM3	58	77.083	Macaca_mulatta
ENSRNOG00000001439	Srrm3	58	57.881	ENSMGAG00000003690	SRRM3	75	63.448	Meleagris_gallopavo
ENSRNOG00000001439	Srrm3	89	89.138	ENSMAUG00000017613	Srrm3	100	91.129	Mesocricetus_auratus
ENSRNOG00000001439	Srrm3	88	90.179	ENSMICG00000010668	SRRM3	57	90.179	Microcebus_murinus
ENSRNOG00000001439	Srrm3	96	95.338	ENSMOCG00000002565	Srrm3	96	95.338	Microtus_ochrogaster
ENSRNOG00000001439	Srrm3	52	95.252	MGP_CAROLIEiJ_G0027845	-	99	95.252	Mus_caroli
ENSRNOG00000001439	Srrm3	100	96.759	ENSMUSG00000039860	Srrm3	100	96.774	Mus_musculus
ENSRNOG00000001439	Srrm3	100	96.296	MGP_PahariEiJ_G0024425	Srrm3	100	96.296	Mus_pahari
ENSRNOG00000001439	Srrm3	100	96.759	MGP_SPRETEiJ_G0028844	Srrm3	100	97.581	Mus_spretus
ENSRNOG00000001439	Srrm3	100	67.747	ENSNLEG00000008423	-	54	74.702	Nomascus_leucogenys
ENSRNOG00000001439	Srrm3	57	82.727	ENSMEUG00000013994	SRRM3	62	82.727	Notamacropus_eugenii
ENSRNOG00000001439	Srrm3	89	86.426	ENSODEG00000015988	SRRM3	96	87.942	Octodon_degus
ENSRNOG00000001439	Srrm3	90	43.361	ENSONIG00000012732	-	50	54.608	Oreochromis_niloticus
ENSRNOG00000001439	Srrm3	88	50.596	ENSOANG00000004590	-	58	49.077	Ornithorhynchus_anatinus
ENSRNOG00000001439	Srrm3	51	89.091	ENSOGAG00000030805	SRRM3	96	88.038	Otolemur_garnettii
ENSRNOG00000001439	Srrm3	61	69.554	ENSOARG00000013722	SRRM3	51	79.091	Ovis_aries
ENSRNOG00000001439	Srrm3	88	90.863	ENSPPRG00000006254	SRRM3	74	92.398	Panthera_pardus
ENSRNOG00000001439	Srrm3	51	90.060	ENSPTRG00000019317	SRRM3	96	89.474	Pan_troglodytes
ENSRNOG00000001439	Srrm3	50	91.964	ENSPANG00000000776	SRRM3	71	87.824	Papio_anubis
ENSRNOG00000001439	Srrm3	71	79.339	ENSPCAG00000013700	SRRM3	77	79.339	Procavia_capensis
ENSRNOG00000001439	Srrm3	100	87.289	ENSPCOG00000028464	SRRM3	96	87.081	Propithecus_coquereli
ENSRNOG00000001439	Srrm3	59	74.740	ENSPVAG00000003400	SRRM3	70	74.617	Pteropus_vampyrus
ENSRNOG00000001439	Srrm3	79	90.258	ENSRROG00000034980	SRRM3	89	91.304	Rhinopithecus_roxellana
ENSRNOG00000001439	Srrm3	54	93.023	ENSSSCG00000032250	SRRM3	95	77.244	Sus_scrofa
ENSRNOG00000001439	Srrm3	57	83.471	ENSTTRG00000014836	-	62	83.471	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function