EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001727 (Gene tree)
Gene ID: 288029
Gene Symbol: Lsg1
Alias: LOC288029|RGD1309089
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 29688 bases
Position: chr11:73693814-73723501
Accession: 1309089
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000002354	MMR_HSR1	PF01926.23	5.4e-14	1	1
ENSRNOP00000071302	MMR_HSR1	PF01926.23	5.4e-14	1	1
ENSRNOP00000074962	MMR_HSR1	PF01926.23	5.4e-14	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000081081	-	2345	-	ENSRNOP00000074962	655 (aa)	-	Q5BJT6
ENSRNOT00000090940	-	1968	-	ENSRNOP00000071302	655 (aa)	-	Q5BJT6
ENSRNOT00000002354	-	2252	-	ENSRNOP00000002354	655 (aa)	-	Q5BJT6

Gene Model

Click here to download ENSRNOG00000001727's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000001727	Lsg1	50	38.525	ENSRNOG00000000798	Gnl1	64	38.525

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001727	Lsg1	100	82.051	ENSG00000041802	LSG1	98	93.103	Homo_sapiens
ENSRNOG00000001727	Lsg1	100	64.492	ENSAPOG00000009694	lsg1	100	64.340	Acanthochromis_polyacanthus
ENSRNOG00000001727	Lsg1	100	78.614	ENSAMEG00000009343	LSG1	100	78.614	Ailuropoda_melanoleuca
ENSRNOG00000001727	Lsg1	98	63.889	ENSACIG00000012406	lsg1	100	63.801	Amphilophus_citrinellus
ENSRNOG00000001727	Lsg1	100	63.040	ENSAOCG00000016066	lsg1	100	63.158	Amphiprion_ocellaris
ENSRNOG00000001727	Lsg1	100	63.189	ENSAPEG00000003252	lsg1	100	63.308	Amphiprion_percula
ENSRNOG00000001727	Lsg1	98	65.741	ENSATEG00000011794	lsg1	100	65.753	Anabas_testudineus
ENSRNOG00000001727	Lsg1	95	65.016	ENSACAG00000004222	LSG1	99	65.016	Anolis_carolinensis
ENSRNOG00000001727	Lsg1	100	82.956	ENSANAG00000021153	LSG1	100	82.956	Aotus_nancymaae
ENSRNOG00000001727	Lsg1	100	64.340	ENSACLG00000000520	lsg1	100	62.388	Astatotilapia_calliptera
ENSRNOG00000001727	Lsg1	99	63.568	ENSAMXG00000008271	lsg1	99	62.969	Astyanax_mexicanus
ENSRNOG00000001727	Lsg1	100	80.793	ENSBTAG00000008461	LSG1	100	80.640	Bos_taurus
ENSRNOG00000001727	Lsg1	68	49.754	WBGene00016907	C53H9.2	94	55.147	Caenorhabditis_elegans
ENSRNOG00000001727	Lsg1	100	82.805	ENSCJAG00000013962	LSG1	100	82.805	Callithrix_jacchus
ENSRNOG00000001727	Lsg1	95	79.524	ENSCAFG00000013445	LSG1	100	79.524	Canis_familiaris
ENSRNOG00000001727	Lsg1	100	78.529	ENSCAFG00020002216	LSG1	100	78.529	Canis_lupus_dingo
ENSRNOG00000001727	Lsg1	100	81.887	ENSCHIG00000015769	LSG1	100	81.887	Capra_hircus
ENSRNOG00000001727	Lsg1	100	82.956	ENSTSYG00000001447	LSG1	100	82.956	Carlito_syrichta
ENSRNOG00000001727	Lsg1	95	77.389	ENSCAPG00000009856	LSG1	100	76.640	Cavia_aperea
ENSRNOG00000001727	Lsg1	100	82.353	ENSCCAG00000035744	LSG1	100	82.353	Cebus_capucinus
ENSRNOG00000001727	Lsg1	100	82.655	ENSCATG00000042060	LSG1	100	81.297	Cercocebus_atys
ENSRNOG00000001727	Lsg1	100	82.805	ENSCSAG00000008796	LSG1	92	82.805	Chlorocebus_sabaeus
ENSRNOG00000001727	Lsg1	100	70.045	ENSCPBG00000015941	LSG1	83	69.598	Chrysemys_picta_bellii
ENSRNOG00000001727	Lsg1	67	63.684	ENSCING00000007079	-	93	63.684	Ciona_intestinalis
ENSRNOG00000001727	Lsg1	85	48.763	ENSCSAVG00000002514	-	89	62.755	Ciona_savignyi
ENSRNOG00000001727	Lsg1	100	82.202	ENSCANG00000030709	LSG1	100	82.202	Colobus_angolensis_palliatus
ENSRNOG00000001727	Lsg1	100	89.313	ENSCGRG00001019846	Lsg1	100	89.466	Cricetulus_griseus_chok1gshd
ENSRNOG00000001727	Lsg1	100	89.313	ENSCGRG00000014617	Lsg1	100	89.466	Cricetulus_griseus_crigri
ENSRNOG00000001727	Lsg1	98	65.469	ENSCVAG00000002484	lsg1	100	65.854	Cyprinodon_variegatus
ENSRNOG00000001727	Lsg1	100	65.766	ENSDARG00000015352	lsg1	100	66.717	Danio_rerio
ENSRNOG00000001727	Lsg1	100	80.030	ENSDNOG00000006224	LSG1	100	79.728	Dasypus_novemcinctus
ENSRNOG00000001727	Lsg1	85	59.016	FBgn0266284	Ns3	91	59.016	Drosophila_melanogaster
ENSRNOG00000001727	Lsg1	88	88.000	ENSETEG00000003888	LSG1	89	88.000	Echinops_telfairi
ENSRNOG00000001727	Lsg1	88	56.926	ENSEBUG00000003119	lsg1	85	56.061	Eptatretus_burgeri
ENSRNOG00000001727	Lsg1	100	82.655	ENSEASG00005000678	LSG1	100	82.655	Equus_asinus_asinus
ENSRNOG00000001727	Lsg1	100	82.805	ENSECAG00000017659	LSG1	100	82.805	Equus_caballus
ENSRNOG00000001727	Lsg1	87	76.923	ENSEEUG00000015217	LSG1	87	76.923	Erinaceus_europaeus
ENSRNOG00000001727	Lsg1	100	62.879	ENSELUG00000023973	lsg1	100	62.519	Esox_lucius
ENSRNOG00000001727	Lsg1	100	81.448	ENSFCAG00000024957	LSG1	100	81.297	Felis_catus
ENSRNOG00000001727	Lsg1	99	64.297	ENSFALG00000007210	LSG1	99	63.308	Ficedula_albicollis
ENSRNOG00000001727	Lsg1	100	78.811	ENSFDAG00000017373	LSG1	100	78.811	Fukomys_damarensis
ENSRNOG00000001727	Lsg1	97	64.142	ENSFHEG00000003680	lsg1	99	63.609	Fundulus_heteroclitus
ENSRNOG00000001727	Lsg1	84	70.370	ENSGMOG00000015834	lsg1	88	70.238	Gadus_morhua
ENSRNOG00000001727	Lsg1	99	63.827	ENSGALG00000007058	LSG1	87	63.528	Gallus_gallus
ENSRNOG00000001727	Lsg1	97	64.890	ENSGAFG00000015831	lsg1	99	64.526	Gambusia_affinis
ENSRNOG00000001727	Lsg1	98	63.790	ENSGACG00000009323	lsg1	100	62.913	Gasterosteus_aculeatus
ENSRNOG00000001727	Lsg1	100	81.900	ENSGGOG00000000520	LSG1	100	81.900	Gorilla_gorilla
ENSRNOG00000001727	Lsg1	100	64.231	ENSHBUG00000005659	lsg1	100	62.991	Haplochromis_burtoni
ENSRNOG00000001727	Lsg1	100	78.333	ENSHGLG00000017390	LSG1	100	77.727	Heterocephalus_glaber_female
ENSRNOG00000001727	Lsg1	100	78.182	ENSHGLG00100018587	LSG1	100	77.576	Heterocephalus_glaber_male
ENSRNOG00000001727	Lsg1	98	64.087	ENSHCOG00000016848	lsg1	100	63.053	Hippocampus_comes
ENSRNOG00000001727	Lsg1	100	65.549	ENSIPUG00000008631	lsg1	100	64.492	Ictalurus_punctatus
ENSRNOG00000001727	Lsg1	81	84.848	ENSSTOG00000010234	LSG1	99	84.848	Ictidomys_tridecemlineatus
ENSRNOG00000001727	Lsg1	99	82.012	ENSJJAG00000015513	Lsg1	99	82.012	Jaculus_jaculus
ENSRNOG00000001727	Lsg1	98	63.426	ENSKMAG00000009681	lsg1	100	62.481	Kryptolebias_marmoratus
ENSRNOG00000001727	Lsg1	98	64.174	ENSLBEG00000024261	lsg1	100	63.511	Labrus_bergylta
ENSRNOG00000001727	Lsg1	100	65.269	ENSLACG00000013399	LSG1	100	65.269	Latimeria_chalumnae
ENSRNOG00000001727	Lsg1	98	63.881	ENSLOCG00000004918	lsg1	100	64.812	Lepisosteus_oculatus
ENSRNOG00000001727	Lsg1	100	81.250	ENSLAFG00000012919	-	100	81.250	Loxodonta_africana
ENSRNOG00000001727	Lsg1	100	82.655	ENSMFAG00000039903	LSG1	100	81.297	Macaca_fascicularis
ENSRNOG00000001727	Lsg1	100	82.805	ENSMMUG00000010708	LSG1	100	82.805	Macaca_mulatta
ENSRNOG00000001727	Lsg1	100	82.805	ENSMNEG00000031538	LSG1	100	81.448	Macaca_nemestrina
ENSRNOG00000001727	Lsg1	100	82.655	ENSMLEG00000041184	LSG1	100	82.655	Mandrillus_leucophaeus
ENSRNOG00000001727	Lsg1	100	63.404	ENSMAMG00000000470	lsg1	100	62.256	Mastacembelus_armatus
ENSRNOG00000001727	Lsg1	100	64.384	ENSMZEG00005017865	lsg1	100	63.142	Maylandia_zebra
ENSRNOG00000001727	Lsg1	89	65.210	ENSMGAG00000007050	LSG1	99	64.706	Meleagris_gallopavo
ENSRNOG00000001727	Lsg1	96	84.494	ENSMAUG00000016976	Lsg1	97	84.810	Mesocricetus_auratus
ENSRNOG00000001727	Lsg1	100	81.364	ENSMICG00000049087	LSG1	100	81.364	Microcebus_murinus
ENSRNOG00000001727	Lsg1	100	86.718	ENSMOCG00000022136	Lsg1	100	85.649	Microtus_ochrogaster
ENSRNOG00000001727	Lsg1	83	72.500	ENSMMOG00000008884	lsg1	100	71.937	Mola_mola
ENSRNOG00000001727	Lsg1	99	59.701	ENSMODG00000019828	LSG1	99	58.060	Monodelphis_domestica
ENSRNOG00000001727	Lsg1	100	90.534	MGP_CAROLIEiJ_G0020648	Lsg1	100	90.840	Mus_caroli
ENSRNOG00000001727	Lsg1	100	90.992	ENSMUSG00000022538	Lsg1	100	91.298	Mus_musculus
ENSRNOG00000001727	Lsg1	98	90.712	MGP_PahariEiJ_G0016352	Lsg1	100	91.020	Mus_pahari
ENSRNOG00000001727	Lsg1	100	91.145	MGP_SPRETEiJ_G0021544	Lsg1	100	91.450	Mus_spretus
ENSRNOG00000001727	Lsg1	100	78.884	ENSMPUG00000003734	LSG1	100	78.733	Mustela_putorius_furo
ENSRNOG00000001727	Lsg1	100	82.040	ENSMLUG00000012548	LSG1	100	82.040	Myotis_lucifugus
ENSRNOG00000001727	Lsg1	100	84.885	ENSNGAG00000021872	Lsg1	100	84.885	Nannospalax_galili
ENSRNOG00000001727	Lsg1	100	82.504	ENSNLEG00000008293	LSG1	100	82.504	Nomascus_leucogenys
ENSRNOG00000001727	Lsg1	70	72.165	ENSMEUG00000009041	-	82	72.165	Notamacropus_eugenii
ENSRNOG00000001727	Lsg1	95	71.587	ENSOANG00000012742	LSG1	99	71.154	Ornithorhynchus_anatinus
ENSRNOG00000001727	Lsg1	100	82.655	ENSOCUG00000004817	LSG1	100	82.655	Oryctolagus_cuniculus
ENSRNOG00000001727	Lsg1	98	63.707	ENSORLG00000007695	lsg1	100	62.614	Oryzias_latipes
ENSRNOG00000001727	Lsg1	98	63.764	ENSORLG00020016286	lsg1	100	62.367	Oryzias_latipes_hni
ENSRNOG00000001727	Lsg1	98	63.707	ENSORLG00015012025	lsg1	100	63.053	Oryzias_latipes_hsok
ENSRNOG00000001727	Lsg1	98	62.830	ENSOMEG00000022379	lsg1	100	62.500	Oryzias_melastigma
ENSRNOG00000001727	Lsg1	100	80.360	ENSOGAG00000003475	LSG1	100	80.360	Otolemur_garnettii
ENSRNOG00000001727	Lsg1	100	80.061	ENSOARG00000020403	LSG1	100	79.909	Ovis_aries
ENSRNOG00000001727	Lsg1	100	81.900	ENSPPAG00000029271	LSG1	100	81.900	Pan_paniscus
ENSRNOG00000001727	Lsg1	100	80.299	ENSPPRG00000010281	LSG1	100	80.149	Panthera_pardus
ENSRNOG00000001727	Lsg1	100	81.297	ENSPTIG00000010789	LSG1	100	81.146	Panthera_tigris_altaica
ENSRNOG00000001727	Lsg1	100	81.750	ENSPTRG00000015760	LSG1	100	81.750	Pan_troglodytes
ENSRNOG00000001727	Lsg1	100	82.956	ENSPANG00000018249	LSG1	100	81.599	Papio_anubis
ENSRNOG00000001727	Lsg1	98	64.798	ENSPKIG00000002895	lsg1	100	63.636	Paramormyrops_kingsleyae
ENSRNOG00000001727	Lsg1	96	66.719	ENSPSIG00000009821	LSG1	100	66.303	Pelodiscus_sinensis
ENSRNOG00000001727	Lsg1	95	64.013	ENSPMGG00000000931	lsg1	100	63.275	Periophthalmus_magnuspinnatus
ENSRNOG00000001727	Lsg1	100	88.298	ENSPEMG00000012082	-	100	87.842	Peromyscus_maniculatus_bairdii
ENSRNOG00000001727	Lsg1	99	60.239	ENSPMAG00000007451	lsg1	99	59.342	Petromyzon_marinus
ENSRNOG00000001727	Lsg1	100	67.876	ENSPCIG00000013890	LSG1	82	67.876	Phascolarctos_cinereus
ENSRNOG00000001727	Lsg1	97	65.528	ENSPFOG00000021882	lsg1	99	64.458	Poecilia_formosa
ENSRNOG00000001727	Lsg1	97	64.907	ENSPLAG00000019536	lsg1	99	63.855	Poecilia_latipinna
ENSRNOG00000001727	Lsg1	97	64.861	ENSPMEG00000017281	lsg1	99	63.814	Poecilia_mexicana
ENSRNOG00000001727	Lsg1	97	55.556	ENSPREG00000006048	lsg1	99	54.748	Poecilia_reticulata
ENSRNOG00000001727	Lsg1	92	81.209	ENSPPYG00000014425	LSG1	100	79.214	Pongo_abelii
ENSRNOG00000001727	Lsg1	90	88.000	ENSPCAG00000005511	LSG1	90	88.000	Procavia_capensis
ENSRNOG00000001727	Lsg1	100	81.146	ENSPCOG00000012360	LSG1	100	81.146	Propithecus_coquereli
ENSRNOG00000001727	Lsg1	100	64.188	ENSPNYG00000021994	lsg1	100	62.239	Pundamilia_nyererei
ENSRNOG00000001727	Lsg1	100	65.015	ENSPNAG00000015533	lsg1	100	63.447	Pygocentrus_nattereri
ENSRNOG00000001727	Lsg1	100	81.297	ENSRBIG00000029053	LSG1	100	81.297	Rhinopithecus_bieti
ENSRNOG00000001727	Lsg1	100	81.297	ENSRROG00000037702	LSG1	100	81.297	Rhinopithecus_roxellana
ENSRNOG00000001727	Lsg1	60	57.485	YGL099W	LSG1	63	57.485	Saccharomyces_cerevisiae
ENSRNOG00000001727	Lsg1	100	82.805	ENSSBOG00000034938	LSG1	100	82.805	Saimiri_boliviensis_boliviensis
ENSRNOG00000001727	Lsg1	78	66.856	ENSSHAG00000003487	LSG1	100	65.076	Sarcophilus_harrisii
ENSRNOG00000001727	Lsg1	98	64.396	ENSSFOG00015008955	lsg1	99	62.222	Scleropages_formosus
ENSRNOG00000001727	Lsg1	98	65.237	ENSSDUG00000004622	lsg1	100	64.307	Seriola_dumerili
ENSRNOG00000001727	Lsg1	98	64.823	ENSSLDG00000010869	lsg1	100	63.969	Seriola_lalandi_dorsalis
ENSRNOG00000001727	Lsg1	82	78.613	ENSSARG00000012981	LSG1	81	78.613	Sorex_araneus
ENSRNOG00000001727	Lsg1	100	68.398	ENSSPUG00000016347	LSG1	100	66.518	Sphenodon_punctatus
ENSRNOG00000001727	Lsg1	100	62.766	ENSSPAG00000005508	lsg1	100	63.581	Stegastes_partitus
ENSRNOG00000001727	Lsg1	100	79.573	ENSSSCG00000011827	LSG1	100	79.573	Sus_scrofa
ENSRNOG00000001727	Lsg1	89	65.391	ENSTGUG00000009068	LSG1	100	63.115	Taeniopygia_guttata
ENSRNOG00000001727	Lsg1	98	61.315	ENSTRUG00000017380	lsg1	100	60.426	Takifugu_rubripes
ENSRNOG00000001727	Lsg1	98	64.587	ENSTNIG00000015570	lsg1	100	64.231	Tetraodon_nigroviridis
ENSRNOG00000001727	Lsg1	100	74.772	ENSTTRG00000000559	LSG1	100	73.516	Tursiops_truncatus
ENSRNOG00000001727	Lsg1	100	79.789	ENSUAMG00000012454	LSG1	100	79.638	Ursus_americanus
ENSRNOG00000001727	Lsg1	100	79.789	ENSUMAG00000000855	LSG1	100	79.638	Ursus_maritimus
ENSRNOG00000001727	Lsg1	95	75.873	ENSVPAG00000012400	LSG1	100	74.245	Vicugna_pacos
ENSRNOG00000001727	Lsg1	95	78.730	ENSVVUG00000008956	LSG1	97	78.730	Vulpes_vulpes
ENSRNOG00000001727	Lsg1	100	64.925	ENSXETG00000003451	lsg1	100	64.925	Xenopus_tropicalis
ENSRNOG00000001727	Lsg1	97	63.932	ENSXCOG00000003239	lsg1	99	63.253	Xiphophorus_couchianus
ENSRNOG00000001727	Lsg1	97	64.242	ENSXMAG00000005536	lsg1	99	63.969	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	-	IEA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0005525	GTP binding	-	ISO	Function
GO:0005525	GTP binding	-	ISS	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISS	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0015030	Cajal body	-	ISS	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0051168	nuclear export	-	ISO	Process
GO:0051168	nuclear export	-	ISS	Process