EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000001996 (Gene tree)
Gene ID: 170956
Gene Symbol: Ythdc1
Alias: Yt521
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 30176 bases
Position: chr14:22971836-23002011
Accession: 621706
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000002736	YTH	PF04146.15	1.1e-39	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000002736	-	2968	XM_006250805	ENSRNOP00000002736	738 (aa)	XP_006250867	Q9QY02

Gene Model

Click here to download ENSRNOG00000001996's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000001996's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000001996	Ythdc1	100	96.211	ENSG00000083896	YTHDC1	100	96.211	Homo_sapiens
ENSRNOG00000001996	Ythdc1	57	59.102	ENSAPOG00000013997	ythdc1	57	61.593	Acanthochromis_polyacanthus
ENSRNOG00000001996	Ythdc1	93	92.117	ENSAMEG00000005688	YTHDC1	93	91.533	Ailuropoda_melanoleuca
ENSRNOG00000001996	Ythdc1	71	57.882	ENSACIG00000019728	ythdc1	80	58.920	Amphilophus_citrinellus
ENSRNOG00000001996	Ythdc1	57	60.135	ENSAOCG00000000239	ythdc1	59	65.772	Amphiprion_ocellaris
ENSRNOG00000001996	Ythdc1	50	64.151	ENSAPEG00000000618	ythdc1	53	66.579	Amphiprion_percula
ENSRNOG00000001996	Ythdc1	91	82.815	ENSAPLG00000009921	YTHDC1	60	94.379	Anas_platyrhynchos
ENSRNOG00000001996	Ythdc1	93	82.482	ENSACAG00000009697	YTHDC1	59	92.506	Anolis_carolinensis
ENSRNOG00000001996	Ythdc1	100	94.993	ENSANAG00000001522	YTHDC1	100	94.993	Aotus_nancymaae
ENSRNOG00000001996	Ythdc1	93	51.464	ENSACLG00000019371	ythdc1	59	64.944	Astatotilapia_calliptera
ENSRNOG00000001996	Ythdc1	93	62.216	ENSAMXG00000006978	ythdc1	58	77.449	Astyanax_mexicanus
ENSRNOG00000001996	Ythdc1	93	91.825	ENSBTAG00000015572	YTHDC1	93	91.241	Bos_taurus
ENSRNOG00000001996	Ythdc1	100	95.399	ENSCJAG00000009934	YTHDC1	100	95.399	Callithrix_jacchus
ENSRNOG00000001996	Ythdc1	93	91.971	ENSCAFG00000002821	YTHDC1	93	91.387	Canis_familiaris
ENSRNOG00000001996	Ythdc1	93	91.971	ENSCAFG00020027112	YTHDC1	93	91.387	Canis_lupus_dingo
ENSRNOG00000001996	Ythdc1	91	85.651	ENSCHIG00000004810	YTHDC1	95	91.115	Capra_hircus
ENSRNOG00000001996	Ythdc1	100	95.399	ENSTSYG00000011668	YTHDC1	100	95.399	Carlito_syrichta
ENSRNOG00000001996	Ythdc1	91	67.115	ENSCAPG00000008722	YTHDC1	90	66.765	Cavia_aperea
ENSRNOG00000001996	Ythdc1	93	87.153	ENSCPOG00000010929	YTHDC1	92	86.277	Cavia_porcellus
ENSRNOG00000001996	Ythdc1	100	95.264	ENSCCAG00000035754	YTHDC1	100	95.264	Cebus_capucinus
ENSRNOG00000001996	Ythdc1	100	96.346	ENSCATG00000036320	YTHDC1	100	96.346	Cercocebus_atys
ENSRNOG00000001996	Ythdc1	99	95.885	ENSCLAG00000005482	YTHDC1	99	95.885	Chinchilla_lanigera
ENSRNOG00000001996	Ythdc1	100	95.535	ENSCSAG00000005252	YTHDC1	100	95.535	Chlorocebus_sabaeus
ENSRNOG00000001996	Ythdc1	92	84.311	ENSCPBG00000021965	YTHDC1	63	94.614	Chrysemys_picta_bellii
ENSRNOG00000001996	Ythdc1	100	95.399	ENSCANG00000004769	YTHDC1	100	95.399	Colobus_angolensis_palliatus
ENSRNOG00000001996	Ythdc1	100	97.564	ENSCGRG00001000816	Ythdc1	100	97.564	Cricetulus_griseus_chok1gshd
ENSRNOG00000001996	Ythdc1	99	96.438	ENSCGRG00000009807	Ythdc1	99	96.438	Cricetulus_griseus_crigri
ENSRNOG00000001996	Ythdc1	57	59.091	ENSCSEG00000020404	ythdc1	59	64.798	Cynoglossus_semilaevis
ENSRNOG00000001996	Ythdc1	57	58.170	ENSCVAG00000022349	ythdc1	59	63.964	Cyprinodon_variegatus
ENSRNOG00000001996	Ythdc1	93	61.494	ENSDARG00000051953	ythdc1	58	75.982	Danio_rerio
ENSRNOG00000001996	Ythdc1	93	92.857	ENSDNOG00000004949	YTHDC1	93	91.691	Dasypus_novemcinctus
ENSRNOG00000001996	Ythdc1	99	96.159	ENSDORG00000013045	Ythdc1	99	96.159	Dipodomys_ordii
ENSRNOG00000001996	Ythdc1	78	100.000	ENSETEG00000001878	YTHDC1	76	100.000	Echinops_telfairi
ENSRNOG00000001996	Ythdc1	93	92.701	ENSEASG00005018383	YTHDC1	93	92.117	Equus_asinus_asinus
ENSRNOG00000001996	Ythdc1	93	92.117	ENSECAG00000018303	YTHDC1	99	91.264	Equus_caballus
ENSRNOG00000001996	Ythdc1	93	90.949	ENSEEUG00000015466	YTHDC1	93	90.219	Erinaceus_europaeus
ENSRNOG00000001996	Ythdc1	93	60.335	ENSELUG00000014029	ythdc1	57	74.279	Esox_lucius
ENSRNOG00000001996	Ythdc1	93	92.117	ENSFCAG00000026791	YTHDC1	93	91.679	Felis_catus
ENSRNOG00000001996	Ythdc1	62	95.000	ENSFALG00000006581	YTHDC1	87	91.647	Ficedula_albicollis
ENSRNOG00000001996	Ythdc1	91	93.185	ENSFDAG00000018560	YTHDC1	92	93.037	Fukomys_damarensis
ENSRNOG00000001996	Ythdc1	66	60.317	ENSFHEG00000001286	ythdc1	60	55.000	Fundulus_heteroclitus
ENSRNOG00000001996	Ythdc1	62	63.139	ENSGMOG00000018815	ythdc1	76	63.139	Gadus_morhua
ENSRNOG00000001996	Ythdc1	92	84.141	ENSGALG00000035906	YTHDC1	56	94.614	Gallus_gallus
ENSRNOG00000001996	Ythdc1	59	65.693	ENSGAFG00000001759	ythdc1	72	66.078	Gambusia_affinis
ENSRNOG00000001996	Ythdc1	57	62.093	ENSGACG00000015486	ythdc1	57	62.212	Gasterosteus_aculeatus
ENSRNOG00000001996	Ythdc1	93	85.839	ENSGAGG00000007108	YTHDC1	60	96.019	Gopherus_agassizii
ENSRNOG00000001996	Ythdc1	100	96.346	ENSGGOG00000021958	YTHDC1	100	96.346	Gorilla_gorilla
ENSRNOG00000001996	Ythdc1	93	51.604	ENSHBUG00000019288	ythdc1	59	64.944	Haplochromis_burtoni
ENSRNOG00000001996	Ythdc1	93	94.745	ENSHGLG00000006319	-	93	94.161	Heterocephalus_glaber_female
ENSRNOG00000001996	Ythdc1	94	69.828	ENSHGLG00000003239	-	57	76.995	Heterocephalus_glaber_female
ENSRNOG00000001996	Ythdc1	94	68.383	ENSHGLG00100008060	-	57	74.592	Heterocephalus_glaber_male
ENSRNOG00000001996	Ythdc1	93	92.598	ENSHGLG00100001556	-	92	93.195	Heterocephalus_glaber_male
ENSRNOG00000001996	Ythdc1	54	70.213	ENSHCOG00000001520	ythdc1	84	70.213	Hippocampus_comes
ENSRNOG00000001996	Ythdc1	93	65.616	ENSIPUG00000018136	ythdc1	61	81.777	Ictalurus_punctatus
ENSRNOG00000001996	Ythdc1	100	96.346	ENSSTOG00000013652	YTHDC1	100	96.346	Ictidomys_tridecemlineatus
ENSRNOG00000001996	Ythdc1	91	92.444	ENSJJAG00000010268	Ythdc1	93	91.852	Jaculus_jaculus
ENSRNOG00000001996	Ythdc1	57	59.417	ENSKMAG00000006483	ythdc1	85	64.143	Kryptolebias_marmoratus
ENSRNOG00000001996	Ythdc1	65	60.839	ENSLBEG00000020831	ythdc1	72	75.000	Labrus_bergylta
ENSRNOG00000001996	Ythdc1	87	72.265	ENSLACG00000004893	YTHDC1	92	72.043	Latimeria_chalumnae
ENSRNOG00000001996	Ythdc1	93	72.926	ENSLOCG00000003045	ythdc1	92	86.557	Lepisosteus_oculatus
ENSRNOG00000001996	Ythdc1	93	93.577	ENSLAFG00000021592	YTHDC1	99	98.281	Loxodonta_africana
ENSRNOG00000001996	Ythdc1	100	96.482	ENSMFAG00000031927	YTHDC1	100	96.482	Macaca_fascicularis
ENSRNOG00000001996	Ythdc1	100	95.399	ENSMMUG00000002265	YTHDC1	100	96.306	Macaca_mulatta
ENSRNOG00000001996	Ythdc1	100	95.399	ENSMNEG00000033751	YTHDC1	100	95.399	Macaca_nemestrina
ENSRNOG00000001996	Ythdc1	99	96.301	ENSMLEG00000042147	YTHDC1	99	96.301	Mandrillus_leucophaeus
ENSRNOG00000001996	Ythdc1	93	51.464	ENSMZEG00005023173	ythdc1	59	64.944	Maylandia_zebra
ENSRNOG00000001996	Ythdc1	93	82.920	ENSMGAG00000010391	YTHDC1	59	94.614	Meleagris_gallopavo
ENSRNOG00000001996	Ythdc1	100	97.429	ENSMAUG00000001286	Ythdc1	100	97.429	Mesocricetus_auratus
ENSRNOG00000001996	Ythdc1	100	96.617	ENSMICG00000034640	YTHDC1	100	96.617	Microcebus_murinus
ENSRNOG00000001996	Ythdc1	100	97.023	ENSMOCG00000020201	Ythdc1	100	97.023	Microtus_ochrogaster
ENSRNOG00000001996	Ythdc1	88	68.233	ENSMODG00000014337	-	95	68.496	Monodelphis_domestica
ENSRNOG00000001996	Ythdc1	93	86.842	ENSMODG00000020754	-	60	96.956	Monodelphis_domestica
ENSRNOG00000001996	Ythdc1	65	56.695	ENSMODG00000009173	-	88	60.190	Monodelphis_domestica
ENSRNOG00000001996	Ythdc1	96	50.421	ENSMODG00000010076	-	60	60.142	Monodelphis_domestica
ENSRNOG00000001996	Ythdc1	58	69.492	ENSMALG00000013412	ythdc1	56	66.667	Monopterus_albus
ENSRNOG00000001996	Ythdc1	100	98.238	MGP_CAROLIEiJ_G0027347	Ythdc1	100	98.238	Mus_caroli
ENSRNOG00000001996	Ythdc1	100	98.103	ENSMUSG00000035851	Ythdc1	100	98.103	Mus_musculus
ENSRNOG00000001996	Ythdc1	100	98.238	MGP_PahariEiJ_G0017126	Ythdc1	100	98.238	Mus_pahari
ENSRNOG00000001996	Ythdc1	100	98.374	MGP_SPRETEiJ_G0028339	Ythdc1	100	98.374	Mus_spretus
ENSRNOG00000001996	Ythdc1	99	72.951	ENSMPUG00000001743	YTHDC1	100	72.951	Mustela_putorius_furo
ENSRNOG00000001996	Ythdc1	91	92.148	ENSMLUG00000016300	YTHDC1	92	90.815	Myotis_lucifugus
ENSRNOG00000001996	Ythdc1	60	88.914	ENSNGAG00000024000	Ythdc1	93	87.810	Nannospalax_galili
ENSRNOG00000001996	Ythdc1	60	61.261	ENSNBRG00000007663	ythdc1	70	65.138	Neolamprologus_brichardi
ENSRNOG00000001996	Ythdc1	91	93.491	ENSNLEG00000009202	YTHDC1	96	90.737	Nomascus_leucogenys
ENSRNOG00000001996	Ythdc1	80	79.805	ENSMEUG00000007128	YTHDC1	69	79.805	Notamacropus_eugenii
ENSRNOG00000001996	Ythdc1	73	95.845	ENSOPRG00000008986	YTHDC1	74	95.845	Ochotona_princeps
ENSRNOG00000001996	Ythdc1	93	92.701	ENSODEG00000001715	YTHDC1	93	91.387	Octodon_degus
ENSRNOG00000001996	Ythdc1	93	51.883	ENSONIG00000012651	ythdc1	59	65.393	Oreochromis_niloticus
ENSRNOG00000001996	Ythdc1	88	76.220	ENSOANG00000014398	YTHDC1	55	96.962	Ornithorhynchus_anatinus
ENSRNOG00000001996	Ythdc1	93	80.349	ENSOCUG00000015886	YTHDC1	57	93.350	Oryctolagus_cuniculus
ENSRNOG00000001996	Ythdc1	57	58.916	ENSOMEG00000000551	ythdc1	60	63.122	Oryzias_melastigma
ENSRNOG00000001996	Ythdc1	93	93.723	ENSOGAG00000003362	YTHDC1	93	93.723	Otolemur_garnettii
ENSRNOG00000001996	Ythdc1	93	91.825	ENSOARG00000008633	YTHDC1	93	91.241	Ovis_aries
ENSRNOG00000001996	Ythdc1	100	96.346	ENSPPAG00000041315	YTHDC1	100	96.346	Pan_paniscus
ENSRNOG00000001996	Ythdc1	93	93.139	ENSPPRG00000011979	YTHDC1	93	92.701	Panthera_pardus
ENSRNOG00000001996	Ythdc1	91	92.741	ENSPTIG00000015527	YTHDC1	93	92.296	Panthera_tigris_altaica
ENSRNOG00000001996	Ythdc1	100	96.346	ENSPTRG00000016105	YTHDC1	100	96.346	Pan_troglodytes
ENSRNOG00000001996	Ythdc1	100	96.346	ENSPANG00000021590	YTHDC1	100	96.346	Papio_anubis
ENSRNOG00000001996	Ythdc1	93	68.006	ENSPKIG00000018497	ythdc1	83	82.599	Paramormyrops_kingsleyae
ENSRNOG00000001996	Ythdc1	91	84.911	ENSPSIG00000002782	YTHDC1	60	94.379	Pelodiscus_sinensis
ENSRNOG00000001996	Ythdc1	50	61.589	ENSPMGG00000000970	-	75	63.607	Periophthalmus_magnuspinnatus
ENSRNOG00000001996	Ythdc1	99	97.671	ENSPEMG00000013850	Ythdc1	100	96.708	Peromyscus_maniculatus_bairdii
ENSRNOG00000001996	Ythdc1	93	86.696	ENSPCIG00000006870	YTHDC1	60	96.956	Phascolarctos_cinereus
ENSRNOG00000001996	Ythdc1	57	58.259	ENSPLAG00000011079	ythdc1	85	63.820	Poecilia_latipinna
ENSRNOG00000001996	Ythdc1	78	58.353	ENSPREG00000016973	ythdc1	59	57.075	Poecilia_reticulata
ENSRNOG00000001996	Ythdc1	87	95.334	ENSPPYG00000014726	YTHDC1	100	95.334	Pongo_abelii
ENSRNOG00000001996	Ythdc1	78	87.572	ENSPCAG00000009607	YTHDC1	77	85.526	Procavia_capensis
ENSRNOG00000001996	Ythdc1	93	90.219	ENSPCOG00000019105	YTHDC1	92	89.781	Propithecus_coquereli
ENSRNOG00000001996	Ythdc1	93	90.657	ENSPVAG00000015551	YTHDC1	93	90.657	Pteropus_vampyrus
ENSRNOG00000001996	Ythdc1	93	51.464	ENSPNYG00000011687	ythdc1	59	64.944	Pundamilia_nyererei
ENSRNOG00000001996	Ythdc1	93	67.429	ENSPNAG00000028365	ythdc1	60	83.144	Pygocentrus_nattereri
ENSRNOG00000001996	Ythdc1	91	93.195	ENSRBIG00000028279	YTHDC1	96	91.304	Rhinopithecus_bieti
ENSRNOG00000001996	Ythdc1	100	95.399	ENSRROG00000035028	YTHDC1	100	95.399	Rhinopithecus_roxellana
ENSRNOG00000001996	Ythdc1	100	96.482	ENSSBOG00000022353	YTHDC1	100	96.482	Saimiri_boliviensis_boliviensis
ENSRNOG00000001996	Ythdc1	93	85.673	ENSSHAG00000002538	YTHDC1	66	96.956	Sarcophilus_harrisii
ENSRNOG00000001996	Ythdc1	93	67.335	ENSSFOG00015003298	ythdc1	60	83.953	Scleropages_formosus
ENSRNOG00000001996	Ythdc1	57	59.031	ENSSMAG00000009086	ythdc1	60	64.126	Scophthalmus_maximus
ENSRNOG00000001996	Ythdc1	72	92.481	ENSSARG00000010960	YTHDC1	91	91.729	Sorex_araneus
ENSRNOG00000001996	Ythdc1	93	80.233	ENSSPUG00000009357	YTHDC1	62	93.706	Sphenodon_punctatus
ENSRNOG00000001996	Ythdc1	57	61.036	ENSSPAG00000011449	ythdc1	59	65.772	Stegastes_partitus
ENSRNOG00000001996	Ythdc1	93	92.566	ENSSSCG00000035505	YTHDC1	93	93.149	Sus_scrofa
ENSRNOG00000001996	Ythdc1	93	84.380	ENSTGUG00000004452	-	59	94.614	Taeniopygia_guttata
ENSRNOG00000001996	Ythdc1	64	61.224	ENSTRUG00000010142	ythdc1	69	70.000	Takifugu_rubripes
ENSRNOG00000001996	Ythdc1	90	58.849	ENSTNIG00000013243	ythdc1	90	64.840	Tetraodon_nigroviridis
ENSRNOG00000001996	Ythdc1	93	85.401	ENSTBEG00000011546	YTHDC1	59	93.911	Tupaia_belangeri
ENSRNOG00000001996	Ythdc1	93	91.387	ENSTTRG00000005083	YTHDC1	93	90.803	Tursiops_truncatus
ENSRNOG00000001996	Ythdc1	86	91.483	ENSUAMG00000010388	YTHDC1	92	91.009	Ursus_americanus
ENSRNOG00000001996	Ythdc1	99	81.233	ENSUMAG00000013668	YTHDC1	98	81.370	Ursus_maritimus
ENSRNOG00000001996	Ythdc1	93	89.197	ENSVPAG00000009040	YTHDC1	92	88.029	Vicugna_pacos
ENSRNOG00000001996	Ythdc1	91	93.195	ENSVVUG00000005387	YTHDC1	94	89.898	Vulpes_vulpes
ENSRNOG00000001996	Ythdc1	92	72.434	ENSXETG00000017960	ythdc1	91	70.485	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	10564280.	IDA	Process
GO:0003723	RNA binding	-	ISO	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005515	protein binding	10564280.19282290.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	10564280.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006376	mRNA splice site selection	-	ISO	Process
GO:0006376	mRNA splice site selection	-	ISS	Process
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0006406	mRNA export from nucleus	-	ISS	Process
GO:0009048	dosage compensation by inactivation of X chromosome	-	ISO	Process
GO:0009048	dosage compensation by inactivation of X chromosome	-	ISS	Process
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0010608	posttranscriptional regulation of gene expression	-	ISS	Process
GO:0016604	nuclear body	10564280.	IDA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0016607	nuclear speck	-	ISS	Component
GO:0048024	regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	-	ISS	Process
GO:1990247	N6-methyladenosine-containing RNA binding	25389274.	IDA	Function
GO:1990247	N6-methyladenosine-containing RNA binding	-	ISO	Function