EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002042 (Gene tree)
Gene ID: 24388
Gene Symbol: Gfi1
Alias: -
Full Name: growth factor independent 1 transcriptional repressor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 9379 bases
Position: chr14:3058993-3068371
Accession: 2680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000002807	zf-C2H2	PF00096.26	2.7e-28	1	6
ENSRNOP00000002807	zf-C2H2	PF00096.26	2.7e-28	2	6
ENSRNOP00000002807	zf-C2H2	PF00096.26	2.7e-28	3	6
ENSRNOP00000002807	zf-C2H2	PF00096.26	2.7e-28	4	6
ENSRNOP00000002807	zf-C2H2	PF00096.26	2.7e-28	5	6
ENSRNOP00000002807	zf-C2H2	PF00096.26	2.7e-28	6	6
ENSRNOP00000002807	zf-met	PF12874.7	1.5e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000002807	-	2408	XM_008769917	ENSRNOP00000002807	423 (aa)	XP_008768139	Q07120

Gene Model

Click here to download ENSRNOG00000002042's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002042's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000002042	Gfi1	52	39.645	ENSRNOG00000061533	AABR07001926.3	83	39.645

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002042	Gfi1	100	87.470	ENSG00000162676	GFI1	100	87.470	Homo_sapiens
ENSRNOG00000002042	Gfi1	100	61.916	ENSAPOG00000015189	gfi1ab	100	61.682	Acanthochromis_polyacanthus
ENSRNOG00000002042	Gfi1	100	62.061	ENSACIG00000016354	gfi1ab	100	62.005	Amphilophus_citrinellus
ENSRNOG00000002042	Gfi1	100	53.271	ENSAOCG00000008339	gfi1ab	100	53.505	Amphiprion_ocellaris
ENSRNOG00000002042	Gfi1	100	62.617	ENSAPEG00000023870	gfi1ab	100	62.383	Amphiprion_percula
ENSRNOG00000002042	Gfi1	100	59.670	ENSATEG00000009167	gfi1ab	89	58.629	Anabas_testudineus
ENSRNOG00000002042	Gfi1	88	72.922	ENSAPLG00000015700	GFI1	100	72.922	Anas_platyrhynchos
ENSRNOG00000002042	Gfi1	100	69.284	ENSACAG00000004498	GFI1	100	69.515	Anolis_carolinensis
ENSRNOG00000002042	Gfi1	100	85.343	ENSANAG00000019656	GFI1	100	85.343	Aotus_nancymaae
ENSRNOG00000002042	Gfi1	100	62.617	ENSACLG00000026458	gfi1ab	93	62.617	Astatotilapia_calliptera
ENSRNOG00000002042	Gfi1	100	58.447	ENSAMXG00000039600	gfi1ab	100	58.257	Astyanax_mexicanus
ENSRNOG00000002042	Gfi1	100	86.288	ENSBTAG00000016723	GFI1	100	86.288	Bos_taurus
ENSRNOG00000002042	Gfi1	100	84.634	ENSCJAG00000017609	GFI1	100	84.634	Callithrix_jacchus
ENSRNOG00000002042	Gfi1	100	86.998	ENSCAFG00000020155	GFI1	100	86.998	Canis_familiaris
ENSRNOG00000002042	Gfi1	100	86.998	ENSCAFG00020013371	GFI1	88	86.998	Canis_lupus_dingo
ENSRNOG00000002042	Gfi1	100	85.816	ENSCHIG00000016135	GFI1	100	85.816	Capra_hircus
ENSRNOG00000002042	Gfi1	100	88.652	ENSCPOG00000011727	GFI1	100	88.652	Cavia_porcellus
ENSRNOG00000002042	Gfi1	100	85.579	ENSCCAG00000036072	GFI1	100	85.579	Cebus_capucinus
ENSRNOG00000002042	Gfi1	100	86.998	ENSCATG00000037873	GFI1	100	86.998	Cercocebus_atys
ENSRNOG00000002042	Gfi1	100	84.161	ENSCLAG00000005915	GFI1	100	82.529	Chinchilla_lanigera
ENSRNOG00000002042	Gfi1	86	85.205	ENSCSAG00000001469	GFI1	100	85.205	Chlorocebus_sabaeus
ENSRNOG00000002042	Gfi1	100	86.761	ENSCANG00000034077	GFI1	100	86.761	Colobus_angolensis_palliatus
ENSRNOG00000002042	Gfi1	100	91.253	ENSCGRG00001015432	Gfi1	100	91.253	Cricetulus_griseus_chok1gshd
ENSRNOG00000002042	Gfi1	100	56.621	ENSCSEG00000017729	GFI1	100	56.813	Cynoglossus_semilaevis
ENSRNOG00000002042	Gfi1	100	58.140	ENSCVAG00000004930	GFI1	100	59.302	Cyprinodon_variegatus
ENSRNOG00000002042	Gfi1	100	59.535	ENSCVAG00000011828	gfi1ab	100	58.879	Cyprinodon_variegatus
ENSRNOG00000002042	Gfi1	100	62.150	ENSDARG00000044457	gfi1ab	100	62.150	Danio_rerio
ENSRNOG00000002042	Gfi1	100	84.434	ENSDNOG00000000782	GFI1	97	85.882	Dasypus_novemcinctus
ENSRNOG00000002042	Gfi1	100	83.529	ENSEBUG00000008075	gfi1ab	57	83.529	Eptatretus_burgeri
ENSRNOG00000002042	Gfi1	100	85.343	ENSEASG00005015509	GFI1	86	86.525	Equus_asinus_asinus
ENSRNOG00000002042	Gfi1	86	82.740	ENSECAG00000006647	GFI1	92	79.744	Equus_caballus
ENSRNOG00000002042	Gfi1	100	79.196	ENSEEUG00000000198	GFI1	100	79.905	Erinaceus_europaeus
ENSRNOG00000002042	Gfi1	100	57.506	ENSELUG00000019033	GFI1	100	57.506	Esox_lucius
ENSRNOG00000002042	Gfi1	100	63.341	ENSELUG00000003015	gfi1ab	99	61.949	Esox_lucius
ENSRNOG00000002042	Gfi1	100	86.761	ENSFCAG00000005914	GFI1	100	86.761	Felis_catus
ENSRNOG00000002042	Gfi1	100	56.849	ENSFHEG00000000341	GFI1	100	59.404	Fundulus_heteroclitus
ENSRNOG00000002042	Gfi1	100	61.215	ENSFHEG00000010997	gfi1ab	100	59.016	Fundulus_heteroclitus
ENSRNOG00000002042	Gfi1	100	60.606	ENSGMOG00000007737	gfi1ab	100	60.606	Gadus_morhua
ENSRNOG00000002042	Gfi1	100	71.462	ENSGALG00000043650	GFI1	100	71.694	Gallus_gallus
ENSRNOG00000002042	Gfi1	100	60.000	ENSGAFG00000018063	GFI1	100	59.954	Gambusia_affinis
ENSRNOG00000002042	Gfi1	100	60.185	ENSGAFG00000016637	gfi1ab	100	59.954	Gambusia_affinis
ENSRNOG00000002042	Gfi1	100	62.118	ENSGACG00000004257	gfi1ab	97	62.118	Gasterosteus_aculeatus
ENSRNOG00000002042	Gfi1	100	87.470	ENSGGOG00000005320	GFI1	100	87.470	Gorilla_gorilla
ENSRNOG00000002042	Gfi1	100	62.676	ENSHBUG00000011969	gfi1ab	100	61.972	Haplochromis_burtoni
ENSRNOG00000002042	Gfi1	100	88.416	ENSHGLG00000008020	GFI1	100	88.416	Heterocephalus_glaber_female
ENSRNOG00000002042	Gfi1	100	88.416	ENSHGLG00100000610	GFI1	100	88.416	Heterocephalus_glaber_male
ENSRNOG00000002042	Gfi1	100	52.655	ENSHCOG00000008590	gfi1ab	100	51.549	Hippocampus_comes
ENSRNOG00000002042	Gfi1	100	55.869	ENSHCOG00000019555	GFI1	100	55.896	Hippocampus_comes
ENSRNOG00000002042	Gfi1	100	61.321	ENSIPUG00000010071	gfi1ab	87	61.163	Ictalurus_punctatus
ENSRNOG00000002042	Gfi1	100	58.920	ENSIPUG00000013414	GFI1	100	57.541	Ictalurus_punctatus
ENSRNOG00000002042	Gfi1	100	86.998	ENSSTOG00000014583	GFI1	100	86.998	Ictidomys_tridecemlineatus
ENSRNOG00000002042	Gfi1	100	59.251	ENSKMAG00000003810	gfi1ab	100	59.016	Kryptolebias_marmoratus
ENSRNOG00000002042	Gfi1	100	62.061	ENSLBEG00000027776	gfi1ab	100	61.827	Labrus_bergylta
ENSRNOG00000002042	Gfi1	100	68.458	ENSLACG00000013362	GFI1	98	68.458	Latimeria_chalumnae
ENSRNOG00000002042	Gfi1	99	77.222	ENSLACG00000017590	-	55	77.222	Latimeria_chalumnae
ENSRNOG00000002042	Gfi1	100	64.434	ENSLOCG00000004711	gfi1ab	100	64.434	Lepisosteus_oculatus
ENSRNOG00000002042	Gfi1	100	79.669	ENSLAFG00000018346	GFI1	100	79.905	Loxodonta_africana
ENSRNOG00000002042	Gfi1	100	86.998	ENSMFAG00000045801	GFI1	100	86.998	Macaca_fascicularis
ENSRNOG00000002042	Gfi1	100	86.998	ENSMNEG00000036338	GFI1	100	86.998	Macaca_nemestrina
ENSRNOG00000002042	Gfi1	100	86.998	ENSMLEG00000036181	GFI1	100	86.998	Mandrillus_leucophaeus
ENSRNOG00000002042	Gfi1	100	63.059	ENSMAMG00000008125	gfi1ab	100	62.061	Mastacembelus_armatus
ENSRNOG00000002042	Gfi1	100	62.850	ENSMZEG00005009895	gfi1ab	100	62.850	Maylandia_zebra
ENSRNOG00000002042	Gfi1	87	73.784	ENSMGAG00000008187	GFI1	99	74.054	Meleagris_gallopavo
ENSRNOG00000002042	Gfi1	100	87.470	ENSMICG00000047208	GFI1	100	87.470	Microcebus_murinus
ENSRNOG00000002042	Gfi1	100	75.286	ENSMODG00000011802	GFI1	100	75.744	Monodelphis_domestica
ENSRNOG00000002042	Gfi1	100	61.124	ENSMALG00000014672	gfi1ab	100	60.890	Monopterus_albus
ENSRNOG00000002042	Gfi1	100	97.636	MGP_CAROLIEiJ_G0027508	Gfi1	100	100.000	Mus_caroli
ENSRNOG00000002042	Gfi1	100	96.927	ENSMUSG00000029275	Gfi1	100	96.927	Mus_musculus
ENSRNOG00000002042	Gfi1	100	96.690	MGP_PahariEiJ_G0017280	Gfi1	100	100.000	Mus_pahari
ENSRNOG00000002042	Gfi1	100	96.927	MGP_SPRETEiJ_G0028507	Gfi1	100	96.927	Mus_spretus
ENSRNOG00000002042	Gfi1	100	78.960	ENSMPUG00000004178	GFI1	97	79.669	Mustela_putorius_furo
ENSRNOG00000002042	Gfi1	100	82.588	ENSMLUG00000015191	GFI1	97	83.294	Myotis_lucifugus
ENSRNOG00000002042	Gfi1	100	61.379	ENSNBRG00000015774	gfi1ab	100	61.663	Neolamprologus_brichardi
ENSRNOG00000002042	Gfi1	93	85.459	ENSNLEG00000010470	GFI1	97	85.459	Nomascus_leucogenys
ENSRNOG00000002042	Gfi1	100	86.998	ENSOPRG00000001473	GFI1	100	86.998	Ochotona_princeps
ENSRNOG00000002042	Gfi1	100	62.617	ENSONIG00000019246	gfi1ab	100	62.617	Oreochromis_niloticus
ENSRNOG00000002042	Gfi1	87	83.106	ENSOCUG00000023553	GFI1	93	83.924	Oryctolagus_cuniculus
ENSRNOG00000002042	Gfi1	100	57.834	ENSORLG00000005060	GFI1	100	57.339	Oryzias_latipes
ENSRNOG00000002042	Gfi1	100	60.471	ENSORLG00000013806	gfi1ab	100	59.953	Oryzias_latipes
ENSRNOG00000002042	Gfi1	100	60.187	ENSORLG00020001602	gfi1ab	100	60.187	Oryzias_latipes_hni
ENSRNOG00000002042	Gfi1	100	53.412	ENSORLG00020002817	GFI1	90	61.350	Oryzias_latipes_hni
ENSRNOG00000002042	Gfi1	100	58.508	ENSORLG00015006070	GFI1	100	58.275	Oryzias_latipes_hsok
ENSRNOG00000002042	Gfi1	100	57.442	ENSOMEG00000016722	GFI1	100	57.110	Oryzias_melastigma
ENSRNOG00000002042	Gfi1	100	73.176	ENSOGAG00000027913	GFI1	100	73.176	Otolemur_garnettii
ENSRNOG00000002042	Gfi1	69	97.143	ENSOARG00000016329	GFI1	94	97.143	Ovis_aries
ENSRNOG00000002042	Gfi1	100	75.414	ENSPPAG00000042186	GFI1	100	75.414	Pan_paniscus
ENSRNOG00000002042	Gfi1	100	86.761	ENSPPRG00000007521	GFI1	100	86.761	Panthera_pardus
ENSRNOG00000002042	Gfi1	100	87.470	ENSPTRG00000043053	GFI1	100	87.470	Pan_troglodytes
ENSRNOG00000002042	Gfi1	100	86.998	ENSPANG00000016433	GFI1	100	86.998	Papio_anubis
ENSRNOG00000002042	Gfi1	100	65.438	ENSPKIG00000004263	GFI1	100	63.825	Paramormyrops_kingsleyae
ENSRNOG00000002042	Gfi1	88	74.531	ENSPSIG00000008734	GFI1	97	74.531	Pelodiscus_sinensis
ENSRNOG00000002042	Gfi1	100	58.741	ENSPMGG00000012546	gfi1ab	100	58.275	Periophthalmus_magnuspinnatus
ENSRNOG00000002042	Gfi1	100	76.279	ENSPCIG00000013728	GFI1	100	76.977	Phascolarctos_cinereus
ENSRNOG00000002042	Gfi1	100	60.422	ENSPFOG00000023214	gfi1ab	100	60.706	Poecilia_formosa
ENSRNOG00000002042	Gfi1	84	78.125	ENSPLAG00000010879	gfi1ab	97	78.125	Poecilia_latipinna
ENSRNOG00000002042	Gfi1	100	60.140	ENSPLAG00000005376	GFI1	91	60.557	Poecilia_latipinna
ENSRNOG00000002042	Gfi1	100	59.813	ENSPMEG00000019299	GFI1	100	60.093	Poecilia_mexicana
ENSRNOG00000002042	Gfi1	100	60.422	ENSPMEG00000013694	gfi1ab	100	60.706	Poecilia_mexicana
ENSRNOG00000002042	Gfi1	100	60.471	ENSPREG00000014097	gfi1ab	100	60.941	Poecilia_reticulata
ENSRNOG00000002042	Gfi1	100	53.378	ENSPREG00000007997	GFI1	100	53.538	Poecilia_reticulata
ENSRNOG00000002042	Gfi1	100	71.831	ENSPCAG00000011020	GFI1	100	73.474	Procavia_capensis
ENSRNOG00000002042	Gfi1	100	86.998	ENSPCOG00000020540	GFI1	100	86.998	Propithecus_coquereli
ENSRNOG00000002042	Gfi1	100	82.742	ENSPVAG00000006928	GFI1	100	83.688	Pteropus_vampyrus
ENSRNOG00000002042	Gfi1	100	62.617	ENSPNYG00000021183	gfi1ab	100	62.617	Pundamilia_nyererei
ENSRNOG00000002042	Gfi1	100	60.329	ENSPNAG00000027258	gfi1ab	100	59.859	Pygocentrus_nattereri
ENSRNOG00000002042	Gfi1	100	55.425	ENSPNAG00000028014	GFI1	100	54.884	Pygocentrus_nattereri
ENSRNOG00000002042	Gfi1	100	86.998	ENSRBIG00000036467	GFI1	100	86.998	Rhinopithecus_bieti
ENSRNOG00000002042	Gfi1	100	86.998	ENSRROG00000031687	GFI1	100	86.998	Rhinopithecus_roxellana
ENSRNOG00000002042	Gfi1	100	85.343	ENSSBOG00000031300	GFI1	100	85.343	Saimiri_boliviensis_boliviensis
ENSRNOG00000002042	Gfi1	100	66.200	ENSSFOG00015020295	gfi1	100	65.967	Scleropages_formosus
ENSRNOG00000002042	Gfi1	100	61.647	ENSSMAG00000002782	gfi1ab	100	61.827	Scophthalmus_maximus
ENSRNOG00000002042	Gfi1	100	60.757	ENSSDUG00000022410	gfi1ab	100	60.993	Seriola_dumerili
ENSRNOG00000002042	Gfi1	100	60.284	ENSSLDG00000020163	gfi1ab	100	60.235	Seriola_lalandi_dorsalis
ENSRNOG00000002042	Gfi1	81	81.250	ENSSPAG00000009140	gfi1ab	99	81.250	Stegastes_partitus
ENSRNOG00000002042	Gfi1	100	85.106	ENSSSCG00000006902	GFI1	100	86.052	Sus_scrofa
ENSRNOG00000002042	Gfi1	88	73.046	ENSTGUG00000006060	GFI1	100	73.315	Taeniopygia_guttata
ENSRNOG00000002042	Gfi1	100	59.251	ENSTRUG00000000415	gfi1ab	100	59.016	Takifugu_rubripes
ENSRNOG00000002042	Gfi1	100	60.377	ENSTNIG00000000651	gfi1ab	97	59.906	Tetraodon_nigroviridis
ENSRNOG00000002042	Gfi1	100	84.870	ENSTTRG00000000082	GFI1	100	84.870	Tursiops_truncatus
ENSRNOG00000002042	Gfi1	100	83.215	ENSUAMG00000021124	GFI1	91	84.397	Ursus_americanus
ENSRNOG00000002042	Gfi1	100	66.353	ENSXETG00000023006	gfi1	98	66.353	Xenopus_tropicalis
ENSRNOG00000002042	Gfi1	52	80.734	ENSXCOG00000013213	-	63	80.734	Xiphophorus_couchianus
ENSRNOG00000002042	Gfi1	100	52.941	ENSXMAG00000009274	GFI1	70	54.255	Xiphophorus_maculatus
ENSRNOG00000002042	Gfi1	100	60.000	ENSXMAG00000010523	gfi1ab	100	59.767	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003674	molecular_function	-	ND	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005515	protein binding	16287849.19164764.	IPI	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0007638	mechanosensory behavior	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0009996	negative regulation of cell fate specification	-	ISO	Process
GO:0010956	negative regulation of calcidiol 1-monooxygenase activity	-	IEA	Process
GO:0010956	negative regulation of calcidiol 1-monooxygenase activity	-	ISO	Process
GO:0010977	negative regulation of neuron projection development	-	ISO	Process
GO:0010977	negative regulation of neuron projection development	-	ISS	Process
GO:0016363	nuclear matrix	-	IEA	Component
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016604	nuclear body	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0017053	transcriptional repressor complex	-	ISO	Component
GO:0017053	transcriptional repressor complex	-	ISS	Component
GO:0030097	hemopoiesis	-	IEA	Process
GO:0032088	negative regulation of NF-kappaB transcription factor activity	-	ISO	Process
GO:0034121	regulation of toll-like receptor signaling pathway	-	IEA	Process
GO:0034121	regulation of toll-like receptor signaling pathway	-	ISO	Process
GO:0042472	inner ear morphogenesis	-	ISO	Process
GO:0042491	inner ear auditory receptor cell differentiation	-	ISO	Process
GO:0042660	positive regulation of cell fate specification	-	ISO	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045165	cell fate commitment	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051569	regulation of histone H3-K4 methylation	-	IEA	Process
GO:0070105	positive regulation of interleukin-6-mediated signaling pathway	-	IEA	Process
GO:0070105	positive regulation of interleukin-6-mediated signaling pathway	-	ISO	Process
GO:0071222	cellular response to lipopolysaccharide	-	IEA	Process
GO:0071222	cellular response to lipopolysaccharide	-	ISO	Process