EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000002051 (Gene tree)
Gene ID
85238
Gene Symbol
Synj1
Alias
-
Full Name
synaptojanin 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
75856 bases
Position
chr11:31104787-31180642
Accession
69434
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000002812Exo_endo_phosPF03372.235.7e-1511
ENSRNOP00000045019Exo_endo_phosPF03372.235.9e-1511
ENSRNOP00000060346Exo_endo_phosPF03372.238.1e-1511
ENSRNOP00000002812DUF1866PF08952.112.4e-5811
ENSRNOP00000045019DUF1866PF08952.112.5e-5811
ENSRNOP00000060346DUF1866PF08952.112.8e-5811
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000052033-6901-ENSRNOP000000450191311 (aa)-D4ABN3
ENSRNOT00000065535-4722-ENSRNOP000000603461574 (aa)-Q62910
ENSRNOT00000002812-5838-ENSRNOP000000028121292 (aa)-Q62910
Gene Model
Click here to download ENSRNOG00000002051's gene model file
Pathways
Pathway IDPathway NameSource
rno00562Inositol phosphate metabolismKEGG
rno01100Metabolic pathwaysKEGG
rno04070Phosphatidylinositol signaling systemKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002051's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000002051Synj18550.266ENSRNOG00000017114Synj28254.938
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000002051Synj110093.900ENSG00000159082SYNJ110097.191Homo_sapiens
ENSRNOG00000002051Synj19274.497ENSAPOG00000002809synj19571.220Acanthochromis_polyacanthus
ENSRNOG00000002051Synj19992.884ENSAMEG00000015028SYNJ19887.626Ailuropoda_melanoleuca
ENSRNOG00000002051Synj19967.933ENSACIG00000008857synj19567.607Amphilophus_citrinellus
ENSRNOG00000002051Synj19969.278ENSAOCG00000009835synj19668.433Amphiprion_ocellaris
ENSRNOG00000002051Synj18574.752ENSAPEG00000021010synj19660.725Amphiprion_percula
ENSRNOG00000002051Synj19968.627ENSATEG00000002306synj18963.516Anabas_testudineus
ENSRNOG00000002051Synj110084.306ENSAPLG00000011832SYNJ110077.438Anas_platyrhynchos
ENSRNOG00000002051Synj110083.930ENSACAG00000003006-10084.094Anolis_carolinensis
ENSRNOG00000002051Synj110093.827ENSANAG00000027325SYNJ110093.827Aotus_nancymaae
ENSRNOG00000002051Synj19771.248ENSACLG00000002255synj19670.566Astatotilapia_calliptera
ENSRNOG00000002051Synj18576.727ENSAMXG00000008208synj19560.025Astyanax_mexicanus
ENSRNOG00000002051Synj19992.496ENSBTAG00000003063SYNJ110092.115Bos_taurus
ENSRNOG00000002051Synj110094.059ENSCJAG00000009187SYNJ110094.059Callithrix_jacchus
ENSRNOG00000002051Synj19992.502ENSCAFG00000009041SYNJ110087.247Canis_familiaris
ENSRNOG00000002051Synj19991.777ENSCAFG00020025776SYNJ19889.645Canis_lupus_dingo
ENSRNOG00000002051Synj19991.544ENSCHIG00000005095SYNJ110084.221Capra_hircus
ENSRNOG00000002051Synj110092.973ENSTSYG00000014541SYNJ110092.973Carlito_syrichta
ENSRNOG00000002051Synj19775.810ENSCAPG00000014483SYNJ19979.114Cavia_aperea
ENSRNOG00000002051Synj110093.151ENSCPOG00000012182SYNJ110093.364Cavia_porcellus
ENSRNOG00000002051Synj110093.596ENSCCAG00000020825SYNJ110093.596Cebus_capucinus
ENSRNOG00000002051Synj110093.977ENSCATG00000033891SYNJ110093.977Cercocebus_atys
ENSRNOG00000002051Synj110093.988ENSCLAG00000009796SYNJ110096.434Chinchilla_lanigera
ENSRNOG00000002051Synj110093.683ENSCSAG00000009654SYNJ110093.898Chlorocebus_sabaeus
ENSRNOG00000002051Synj18591.205ENSCHOG00000012390SYNJ18791.205Choloepus_hoffmanni
ENSRNOG00000002051Synj19487.248ENSCPBG00000006402SYNJ19787.460Chrysemys_picta_bellii
ENSRNOG00000002051Synj110093.977ENSCANG00000031359SYNJ110093.977Colobus_angolensis_palliatus
ENSRNOG00000002051Synj110095.576ENSCGRG00001010861Synj110095.795Cricetulus_griseus_chok1gshd
ENSRNOG00000002051Synj110095.576ENSCGRG00000015749Synj110097.004Cricetulus_griseus_crigri
ENSRNOG00000002051Synj18576.208ENSCSEG00000019614synj19970.521Cynoglossus_semilaevis
ENSRNOG00000002051Synj18573.998ENSCVAG00000019250synj110065.242Cyprinodon_variegatus
ENSRNOG00000002051Synj18577.525ENSDARG00000025011synj110070.774Danio_rerio
ENSRNOG00000002051Synj19889.164ENSDNOG00000010732SYNJ19983.386Dasypus_novemcinctus
ENSRNOG00000002051Synj15496.291ENSDORG00000014735-10096.719Dipodomys_ordii
ENSRNOG00000002051Synj18695.726ENSETEG00000018674SYNJ17895.726Echinops_telfairi
ENSRNOG00000002051Synj19992.969ENSEASG00005006287SYNJ19893.867Equus_asinus_asinus
ENSRNOG00000002051Synj19993.130ENSECAG00000004829SYNJ110088.846Equus_caballus
ENSRNOG00000002051Synj19387.805ENSEEUG00000005150SYNJ19587.805Erinaceus_europaeus
ENSRNOG00000002051Synj19965.559ENSELUG00000009731synj19564.057Esox_lucius
ENSRNOG00000002051Synj19893.360ENSFCAG00000012498SYNJ110092.136Felis_catus
ENSRNOG00000002051Synj17478.243ENSFALG00000004680SYNJ110068.974Ficedula_albicollis
ENSRNOG00000002051Synj110093.683ENSFDAG00000016818SYNJ110096.862Fukomys_damarensis
ENSRNOG00000002051Synj18575.202ENSFHEG00000017689synj19660.102Fundulus_heteroclitus
ENSRNOG00000002051Synj17773.287ENSGMOG00000014852synj17772.915Gadus_morhua
ENSRNOG00000002051Synj110082.743ENSGALG00000034317SYNJ110073.878Gallus_gallus
ENSRNOG00000002051Synj18574.345ENSGAFG00000019466synj19658.476Gambusia_affinis
ENSRNOG00000002051Synj19963.781ENSGACG00000020575synj19464.688Gasterosteus_aculeatus
ENSRNOG00000002051Synj110084.384ENSGAGG00000022523SYNJ110084.812Gopherus_agassizii
ENSRNOG00000002051Synj110093.822ENSGGOG00000015945SYNJ110093.822Gorilla_gorilla
ENSRNOG00000002051Synj19771.203ENSHBUG00000007774synj19670.566Haplochromis_burtoni
ENSRNOG00000002051Synj110093.683ENSHGLG00000006420SYNJ110096.862Heterocephalus_glaber_female
ENSRNOG00000002051Synj19993.731ENSHGLG00100012591SYNJ110096.862Heterocephalus_glaber_male
ENSRNOG00000002051Synj19964.593ENSHCOG00000012774synj19565.490Hippocampus_comes
ENSRNOG00000002051Synj19970.425ENSIPUG00000010691SYNJ19560.870Ictalurus_punctatus
ENSRNOG00000002051Synj110095.282ENSSTOG00000015806SYNJ110095.500Ictidomys_tridecemlineatus
ENSRNOG00000002051Synj19888.518ENSJJAG00000020168Synj110084.839Jaculus_jaculus
ENSRNOG00000002051Synj18575.135ENSKMAG00000004221synj19472.398Kryptolebias_marmoratus
ENSRNOG00000002051Synj18574.617ENSLBEG00000015081synj19666.947Labrus_bergylta
ENSRNOG00000002051Synj110076.662ENSLACG00000005928SYNJ19869.504Latimeria_chalumnae
ENSRNOG00000002051Synj19777.994ENSLOCG00000009230synj110070.230Lepisosteus_oculatus
ENSRNOG00000002051Synj19992.508ENSLAFG00000011806SYNJ110085.668Loxodonta_africana
ENSRNOG00000002051Synj19892.964ENSMFAG00000018883SYNJ19993.625Macaca_fascicularis
ENSRNOG00000002051Synj110093.836ENSMMUG00000004624SYNJ110093.836Macaca_mulatta
ENSRNOG00000002051Synj110093.683ENSMNEG00000040077SYNJ19493.898Macaca_nemestrina
ENSRNOG00000002051Synj110093.977ENSMLEG00000037029SYNJ110093.977Mandrillus_leucophaeus
ENSRNOG00000002051Synj19968.703ENSMAMG00000013404synj19659.445Mastacembelus_armatus
ENSRNOG00000002051Synj18575.862ENSMZEG00005024358synj110067.251Maylandia_zebra
ENSRNOG00000002051Synj110083.522ENSMGAG00000014522SYNJ110076.731Meleagris_gallopavo
ENSRNOG00000002051Synj110095.576ENSMAUG00000009743Synj110097.004Mesocricetus_auratus
ENSRNOG00000002051Synj110093.591ENSMICG00000034953SYNJ110093.591Microcebus_murinus
ENSRNOG00000002051Synj18873.443ENSMMOG00000010203synj19668.310Mola_mola
ENSRNOG00000002051Synj19980.138ENSMODG00000021073SYNJ110080.091Monodelphis_domestica
ENSRNOG00000002051Synj19969.306ENSMALG00000014015synj19659.550Monopterus_albus
ENSRNOG00000002051Synj110097.485MGP_CAROLIEiJ_G0020951Synj110098.146Mus_caroli
ENSRNOG00000002051Synj110097.790ENSMUSG00000022973Synj110098.573Mus_musculus
ENSRNOG00000002051Synj110097.942MGP_PahariEiJ_G0016656Synj110098.573Mus_pahari
ENSRNOG00000002051Synj110097.713MGP_SPRETEiJ_G0021857Synj110098.573Mus_spretus
ENSRNOG00000002051Synj19992.982ENSMPUG00000001153SYNJ110087.304Mustela_putorius_furo
ENSRNOG00000002051Synj15294.815ENSMLUG00000026584-10094.815Myotis_lucifugus
ENSRNOG00000002051Synj16182.353ENSMLUG00000005764-10072.886Myotis_lucifugus
ENSRNOG00000002051Synj110095.271ENSNGAG00000000453Synj110097.147Nannospalax_galili
ENSRNOG00000002051Synj18572.257ENSNBRG00000011936synj19665.282Neolamprologus_brichardi
ENSRNOG00000002051Synj18889.816ENSNLEG00000003734SYNJ110089.816Nomascus_leucogenys
ENSRNOG00000002051Synj18876.931ENSMEUG00000004158-7377.163Notamacropus_eugenii
ENSRNOG00000002051Synj19392.927ENSOPRG00000013602SYNJ19392.927Ochotona_princeps
ENSRNOG00000002051Synj15495.863ENSODEG00000002409-10096.148Octodon_degus
ENSRNOG00000002051Synj19970.665ENSONIG00000004667synj110067.900Oreochromis_niloticus
ENSRNOG00000002051Synj19785.292ENSOANG00000006929SYNJ19578.299Ornithorhynchus_anatinus
ENSRNOG00000002051Synj19990.846ENSOCUG00000001420SYNJ110084.287Oryctolagus_cuniculus
ENSRNOG00000002051Synj18575.683ENSORLG00000004320synj19669.778Oryzias_latipes
ENSRNOG00000002051Synj18573.660ENSORLG00020011994synj19467.003Oryzias_latipes_hni
ENSRNOG00000002051Synj18575.386ENSORLG00015018077synj19358.934Oryzias_latipes_hsok
ENSRNOG00000002051Synj18575.477ENSOMEG00000014322synj19568.506Oryzias_melastigma
ENSRNOG00000002051Synj110088.721ENSOGAG00000006010SYNJ19884.548Otolemur_garnettii
ENSRNOG00000002051Synj19991.768ENSOARG00000013414SYNJ19785.374Ovis_aries
ENSRNOG00000002051Synj110093.977ENSPPAG00000026784SYNJ110093.977Pan_paniscus
ENSRNOG00000002051Synj19893.439ENSPPRG00000023469SYNJ110092.213Panthera_pardus
ENSRNOG00000002051Synj19893.360ENSPTIG00000007930SYNJ110092.136Panthera_tigris_altaica
ENSRNOG00000002051Synj110089.961ENSPTRG00000048135-10089.615Pan_troglodytes
ENSRNOG00000002051Synj110093.977ENSPTRG00000023787SYNJ110093.977Pan_troglodytes
ENSRNOG00000002051Synj110093.977ENSPANG00000022531SYNJ110093.977Papio_anubis
ENSRNOG00000002051Synj18978.047ENSPKIG00000022603synj19577.196Paramormyrops_kingsleyae
ENSRNOG00000002051Synj18575.793ENSPMGG00000016831synj19775.884Periophthalmus_magnuspinnatus
ENSRNOG00000002051Synj110096.262ENSPEMG00000018767Synj110097.575Peromyscus_maniculatus_bairdii
ENSRNOG00000002051Synj17961.427ENSPMAG00000002887synj19653.435Petromyzon_marinus
ENSRNOG00000002051Synj19986.075ENSPCIG00000016372SYNJ110086.039Phascolarctos_cinereus
ENSRNOG00000002051Synj18575.862ENSPFOG00000016886synj110066.399Poecilia_formosa
ENSRNOG00000002051Synj18574.573ENSPLAG00000017559synj110064.618Poecilia_latipinna
ENSRNOG00000002051Synj18574.955ENSPMEG00000007643synj18961.854Poecilia_mexicana
ENSRNOG00000002051Synj110067.164ENSPREG00000012412synj19670.031Poecilia_reticulata
ENSRNOG00000002051Synj19993.151ENSPPYG00000011365SYNJ19692.107Pongo_abelii
ENSRNOG00000002051Synj18792.857ENSPCAG00000009906SYNJ18992.857Procavia_capensis
ENSRNOG00000002051Synj19489.435ENSPCOG00000024841SYNJ19689.435Propithecus_coquereli
ENSRNOG00000002051Synj19988.456ENSPVAG00000000892SYNJ110084.038Pteropus_vampyrus
ENSRNOG00000002051Synj18574.659ENSPNYG00000022989synj19670.478Pundamilia_nyererei
ENSRNOG00000002051Synj18477.544ENSPNAG00000021119synj19177.063Pygocentrus_nattereri
ENSRNOG00000002051Synj110094.054ENSRBIG00000034477SYNJ110094.054Rhinopithecus_bieti
ENSRNOG00000002051Synj110094.054ENSRROG00000039256SYNJ110094.054Rhinopithecus_roxellana
ENSRNOG00000002051Synj110093.750ENSSBOG00000021001SYNJ110093.750Saimiri_boliviensis_boliviensis
ENSRNOG00000002051Synj19984.823ENSSHAG00000008538SYNJ19776.933Sarcophilus_harrisii
ENSRNOG00000002051Synj19971.536ENSSFOG00015006095synj19562.270Scleropages_formosus
ENSRNOG00000002051Synj19968.202ENSSMAG00000018066synj19766.247Scophthalmus_maximus
ENSRNOG00000002051Synj18575.766ENSSDUG00000013058synj19659.295Seriola_dumerili
ENSRNOG00000002051Synj110069.139ENSSLDG00000021406synj19669.225Seriola_lalandi_dorsalis
ENSRNOG00000002051Synj16995.865ENSSARG00000009490SYNJ17395.865Sorex_araneus
ENSRNOG00000002051Synj110082.961ENSSPUG00000012552SYNJ19874.326Sphenodon_punctatus
ENSRNOG00000002051Synj17975.073ENSSPAG00000006812SYNJ19660.271Stegastes_partitus
ENSRNOG00000002051Synj19965.745ENSSPAG00000017029synj19566.864Stegastes_partitus
ENSRNOG00000002051Synj110092.018ENSSSCG00000012035SYNJ110092.249Sus_scrofa
ENSRNOG00000002051Synj110083.851ENSTGUG00000013445SYNJ110076.095Taeniopygia_guttata
ENSRNOG00000002051Synj18872.625ENSTRUG00000006907synj19567.624Takifugu_rubripes
ENSRNOG00000002051Synj19968.627ENSTNIG00000009940synj110066.569Tetraodon_nigroviridis
ENSRNOG00000002051Synj19387.253ENSTBEG00000016298SYNJ19287.253Tupaia_belangeri
ENSRNOG00000002051Synj19984.291ENSTTRG00000002222SYNJ110077.722Tursiops_truncatus
ENSRNOG00000002051Synj19495.014ENSUAMG00000018606SYNJ19995.946Ursus_americanus
ENSRNOG00000002051Synj19695.014ENSUMAG00000018419SYNJ19995.946Ursus_maritimus
ENSRNOG00000002051Synj18798.571ENSVPAG00000001241SYNJ18798.571Vicugna_pacos
ENSRNOG00000002051Synj110093.145ENSVVUG00000023125SYNJ110093.359Vulpes_vulpes
ENSRNOG00000002051Synj110078.502ENSXETG00000009899synj110069.527Xenopus_tropicalis
ENSRNOG00000002051Synj18575.953ENSXCOG00000011896synj19670.781Xiphophorus_couchianus
ENSRNOG00000002051Synj110067.110ENSXMAG00000017524synj110068.635Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding-IEAFunction
GO:0004438phosphatidylinositol-3-phosphatase activity-ISOFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity21873635.IBAFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity17097615.IDAFunction
GO:0004439phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity-ISOFunction
GO:0005515protein binding9238017.9950691.10764144.11518713.17257598.20427313.IPIFunction
GO:0005737cytoplasm11498538.IDAComponent
GO:0005874microtubule9428629.IDAComponent
GO:0006836neurotransmitter transport-ISOProcess
GO:0007420brain development21873635.IBAProcess
GO:0007420brain development9931483.IEPProcess
GO:0007612learning21873635.IBAProcess
GO:0007612learning-ISOProcess
GO:0008022protein C-terminus binding9238017.IPIFunction
GO:0012506vesicle membrane-ISSComponent
GO:0014015positive regulation of gliogenesis19282871.IMPProcess
GO:0016082synaptic vesicle priming-ISOProcess
GO:0016191synaptic vesicle uncoating-ISOProcess
GO:0017124SH3 domain binding21873635.IBAFunction
GO:0017124SH3 domain binding8552192.17097615.IDAFunction
GO:0017124SH3 domain binding11498538.IPIFunction
GO:0030117membrane coat-ISOComponent
GO:0030132clathrin coat of coated pit9428629.IDAComponent
GO:0032526response to retinoic acid19282871.IMPProcess
GO:0032991protein-containing complex17257598.IDAComponent
GO:0034097response to cytokine19282871.IMPProcess
GO:0034595phosphatidylinositol phosphate 5-phosphatase activity8552192.IDAFunction
GO:0034595phosphatidylinositol phosphate 5-phosphatase activity-IEAFunction
GO:0034595phosphatidylinositol phosphate 5-phosphatase activity-ISOFunction
GO:0043005neuron projection14704270.IDAComponent
GO:0043195terminal bouton-ISSComponent
GO:0043812phosphatidylinositol-4-phosphate phosphatase activity-ISOFunction
GO:0044877protein-containing complex binding17257598.IDAFunction
GO:0046488phosphatidylinositol metabolic process-ISOProcess
GO:0046855inositol phosphate dephosphorylation21873635.IBAProcess
GO:0046855inositol phosphate dephosphorylation-ISOProcess
GO:0046856phosphatidylinositol dephosphorylation21873635.IBAProcess
GO:0046856phosphatidylinositol dephosphorylation-IEAProcess
GO:0046856phosphatidylinositol dephosphorylation-ISOProcess
GO:0048260positive regulation of receptor-mediated endocytosis15821731.IMPProcess
GO:0048471perinuclear region of cytoplasm21873635.IBAComponent
GO:0048471perinuclear region of cytoplasm-ISSComponent
GO:0048488synaptic vesicle endocytosis21873635.IBAProcess
GO:0048488synaptic vesicle endocytosis-IEAProcess
GO:0048488synaptic vesicle endocytosis-ISOProcess
GO:0048488synaptic vesicle endocytosis-ISSProcess
GO:0048489synaptic vesicle transport-ISOProcess
GO:0052658inositol-1,4,5-trisphosphate 5-phosphatase activity8552192.IDAFunction
GO:0097060synaptic membrane9079704.9428629.IDAComponent
GO:0098685Schaffer collateral - CA1 synapse-ISOComponent
GO:0098688parallel fiber to Purkinje cell synapse7982917.IDAComponent
GO:0098793presynapse21873635.IBAComponent
GO:0098793presynapse7982917.IDAComponent
GO:0098793presynapse-IEAComponent
GO:0098793presynapse-ISOComponent
GO:0098884postsynaptic neurotransmitter receptor internalization-ISOProcess
GO:0098978glutamatergic synapse-ISOComponent
GO:0099149regulation of postsynaptic neurotransmitter receptor internalization-ISOProcess
GO:1904980positive regulation of endosome organization-ISOProcess
GO:1990175EH domain binding9428629.IDAFunction

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us