EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002080 (Gene tree)
Gene ID: 304104
Gene Symbol: Urb1
Alias: LOC304104|RGD1304621
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 60754 bases
Position: chr11:30916730-30977483
Accession: 1304621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000002851	Npa1	PF11707.8	8.1e-84	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000002851	-	7362	-	ENSRNOP00000002851	2278 (aa)	-	D4A7S4

Gene Model

Click here to download ENSRNOG00000002080's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002080's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002080	Urb1	99	76.235	ENSG00000142207	URB1	99	76.033	Homo_sapiens
ENSRNOG00000002080	Urb1	96	46.569	ENSAPOG00000020308	urb1	99	46.723	Acanthochromis_polyacanthus
ENSRNOG00000002080	Urb1	99	73.471	ENSAMEG00000011998	URB1	99	73.295	Ailuropoda_melanoleuca
ENSRNOG00000002080	Urb1	95	43.845	ENSACIG00000003248	urb1	96	43.672	Amphilophus_citrinellus
ENSRNOG00000002080	Urb1	99	40.000	ENSAOCG00000010364	urb1	99	40.000	Amphiprion_ocellaris
ENSRNOG00000002080	Urb1	96	50.526	ENSAPEG00000010758	urb1	99	50.526	Amphiprion_percula
ENSRNOG00000002080	Urb1	98	43.501	ENSATEG00000011790	urb1	97	43.478	Anabas_testudineus
ENSRNOG00000002080	Urb1	97	54.496	ENSAPLG00000012791	URB1	100	54.362	Anas_platyrhynchos
ENSRNOG00000002080	Urb1	99	51.607	ENSACAG00000002817	URB1	99	51.804	Anolis_carolinensis
ENSRNOG00000002080	Urb1	99	75.736	ENSANAG00000024617	URB1	99	75.604	Aotus_nancymaae
ENSRNOG00000002080	Urb1	99	43.761	ENSACLG00000024865	urb1	99	43.761	Astatotilapia_calliptera
ENSRNOG00000002080	Urb1	99	39.842	ENSAMXG00000012306	urb1	99	39.746	Astyanax_mexicanus
ENSRNOG00000002080	Urb1	99	70.696	ENSBTAG00000012412	URB1	99	70.709	Bos_taurus
ENSRNOG00000002080	Urb1	99	75.285	ENSCJAG00000009118	URB1	99	75.154	Callithrix_jacchus
ENSRNOG00000002080	Urb1	99	74.035	ENSCAFG00000008892	URB1	99	73.904	Canis_familiaris
ENSRNOG00000002080	Urb1	99	73.735	ENSCAFG00020025987	-	99	73.603	Canis_lupus_dingo
ENSRNOG00000002080	Urb1	99	72.855	ENSCAFG00020025994	-	99	72.679	Canis_lupus_dingo
ENSRNOG00000002080	Urb1	99	70.653	ENSCHIG00000015645	URB1	99	70.609	Capra_hircus
ENSRNOG00000002080	Urb1	99	75.979	ENSTSYG00000013286	URB1	99	75.891	Carlito_syrichta
ENSRNOG00000002080	Urb1	98	73.978	ENSCAPG00000015589	URB1	99	73.888	Cavia_aperea
ENSRNOG00000002080	Urb1	99	74.967	ENSCPOG00000006748	URB1	99	74.879	Cavia_porcellus
ENSRNOG00000002080	Urb1	99	75.814	ENSCCAG00000021299	URB1	99	75.682	Cebus_capucinus
ENSRNOG00000002080	Urb1	99	76.341	ENSCATG00000042630	URB1	99	76.209	Cercocebus_atys
ENSRNOG00000002080	Urb1	99	75.473	ENSCLAG00000005262	URB1	99	75.385	Chinchilla_lanigera
ENSRNOG00000002080	Urb1	99	75.000	ENSCSAG00000009584	URB1	99	74.869	Chlorocebus_sabaeus
ENSRNOG00000002080	Urb1	99	56.906	ENSCPBG00000006454	URB1	99	56.732	Chrysemys_picta_bellii
ENSRNOG00000002080	Urb1	99	76.253	ENSCANG00000031088	URB1	99	76.121	Colobus_angolensis_palliatus
ENSRNOG00000002080	Urb1	98	86.358	ENSCGRG00001010616	Urb1	100	85.827	Cricetulus_griseus_chok1gshd
ENSRNOG00000002080	Urb1	98	85.836	ENSCGRG00000015840	Urb1	100	85.656	Cricetulus_griseus_crigri
ENSRNOG00000002080	Urb1	97	45.918	ENSCSEG00000012616	urb1	99	41.497	Cynoglossus_semilaevis
ENSRNOG00000002080	Urb1	95	45.212	ENSCVAG00000009076	urb1	98	51.586	Cyprinodon_variegatus
ENSRNOG00000002080	Urb1	99	42.894	ENSDARG00000060308	urb1	99	42.926	Danio_rerio
ENSRNOG00000002080	Urb1	85	73.502	ENSDNOG00000015586	URB1	99	73.502	Dasypus_novemcinctus
ENSRNOG00000002080	Urb1	99	75.671	ENSDORG00000006735	Urb1	99	75.539	Dipodomys_ordii
ENSRNOG00000002080	Urb1	92	75.691	ENSETEG00000009080	URB1	92	75.691	Echinops_telfairi
ENSRNOG00000002080	Urb1	99	73.263	ENSEASG00005007711	URB1	98	74.163	Equus_asinus_asinus
ENSRNOG00000002080	Urb1	97	81.880	ENSECAG00000013206	URB1	99	81.880	Equus_caballus
ENSRNOG00000002080	Urb1	58	80.083	ENSEEUG00000003626	-	57	80.083	Erinaceus_europaeus
ENSRNOG00000002080	Urb1	98	43.371	ENSELUG00000020516	urb1	98	43.618	Esox_lucius
ENSRNOG00000002080	Urb1	99	73.371	ENSFCAG00000002177	URB1	99	73.239	Felis_catus
ENSRNOG00000002080	Urb1	97	49.779	ENSFALG00000004636	URB1	99	49.692	Ficedula_albicollis
ENSRNOG00000002080	Urb1	99	75.736	ENSFDAG00000007288	URB1	95	75.736	Fukomys_damarensis
ENSRNOG00000002080	Urb1	99	41.060	ENSFHEG00000000202	urb1	99	41.828	Fundulus_heteroclitus
ENSRNOG00000002080	Urb1	90	46.479	ENSGMOG00000001838	urb1	91	46.479	Gadus_morhua
ENSRNOG00000002080	Urb1	99	54.688	ENSGALG00000015887	URB1	99	54.645	Gallus_gallus
ENSRNOG00000002080	Urb1	99	42.694	ENSGAFG00000020694	urb1	99	52.008	Gambusia_affinis
ENSRNOG00000002080	Urb1	98	43.419	ENSGACG00000011703	urb1	99	43.395	Gasterosteus_aculeatus
ENSRNOG00000002080	Urb1	99	56.596	ENSGAGG00000022544	URB1	99	56.465	Gopherus_agassizii
ENSRNOG00000002080	Urb1	99	76.209	ENSGGOG00000000285	URB1	99	76.121	Gorilla_gorilla
ENSRNOG00000002080	Urb1	99	43.761	ENSHBUG00000001904	urb1	99	43.761	Haplochromis_burtoni
ENSRNOG00000002080	Urb1	99	74.241	ENSHGLG00000004907	URB1	99	74.111	Heterocephalus_glaber_female
ENSRNOG00000002080	Urb1	99	74.736	ENSHGLG00100010749	URB1	99	74.605	Heterocephalus_glaber_male
ENSRNOG00000002080	Urb1	69	50.096	ENSHCOG00000018683	urb1	97	50.288	Hippocampus_comes
ENSRNOG00000002080	Urb1	99	39.781	ENSIPUG00000014721	urb1	99	39.869	Ictalurus_punctatus
ENSRNOG00000002080	Urb1	99	76.056	ENSSTOG00000004539	URB1	99	75.968	Ictidomys_tridecemlineatus
ENSRNOG00000002080	Urb1	98	44.619	ENSKMAG00000006001	urb1	98	46.467	Kryptolebias_marmoratus
ENSRNOG00000002080	Urb1	97	40.919	ENSLBEG00000027208	urb1	99	50.000	Labrus_bergylta
ENSRNOG00000002080	Urb1	99	47.264	ENSLACG00000017059	URB1	100	47.221	Latimeria_chalumnae
ENSRNOG00000002080	Urb1	97	45.033	ENSLOCG00000009190	urb1	97	44.920	Lepisosteus_oculatus
ENSRNOG00000002080	Urb1	99	71.291	ENSLAFG00000010407	URB1	100	71.160	Loxodonta_africana
ENSRNOG00000002080	Urb1	99	76.121	ENSMFAG00000034391	URB1	97	75.989	Macaca_fascicularis
ENSRNOG00000002080	Urb1	99	75.989	ENSMMUG00000010295	URB1	99	75.858	Macaca_mulatta
ENSRNOG00000002080	Urb1	99	74.890	ENSMNEG00000032981	URB1	99	74.758	Macaca_nemestrina
ENSRNOG00000002080	Urb1	99	76.341	ENSMLEG00000041435	URB1	99	76.209	Mandrillus_leucophaeus
ENSRNOG00000002080	Urb1	99	42.608	ENSMAMG00000011238	urb1	99	42.564	Mastacembelus_armatus
ENSRNOG00000002080	Urb1	99	40.919	ENSMZEG00005011862	urb1	99	40.875	Maylandia_zebra
ENSRNOG00000002080	Urb1	98	54.727	ENSMGAG00000014512	URB1	99	54.683	Meleagris_gallopavo
ENSRNOG00000002080	Urb1	93	83.796	ENSMAUG00000010516	Urb1	100	84.088	Mesocricetus_auratus
ENSRNOG00000002080	Urb1	99	75.099	ENSMICG00000016424	URB1	100	74.967	Microcebus_murinus
ENSRNOG00000002080	Urb1	99	84.822	ENSMOCG00000012613	Urb1	99	84.734	Microtus_ochrogaster
ENSRNOG00000002080	Urb1	99	61.488	ENSMODG00000021076	URB1	99	61.400	Monodelphis_domestica
ENSRNOG00000002080	Urb1	95	42.916	ENSMALG00000017411	urb1	96	51.014	Monopterus_albus
ENSRNOG00000002080	Urb1	100	90.781	MGP_CAROLIEiJ_G0020948	Urb1	100	90.650	Mus_caroli
ENSRNOG00000002080	Urb1	99	90.997	ENSMUSG00000039929	Urb1	99	90.865	Mus_musculus
ENSRNOG00000002080	Urb1	100	91.220	MGP_PahariEiJ_G0016653	Urb1	100	91.045	Mus_pahari
ENSRNOG00000002080	Urb1	99	91.041	MGP_SPRETEiJ_G0021854	Urb1	99	90.909	Mus_spretus
ENSRNOG00000002080	Urb1	99	72.671	ENSMPUG00000001123	URB1	99	72.496	Mustela_putorius_furo
ENSRNOG00000002080	Urb1	99	77.788	ENSNGAG00000001905	Urb1	100	77.612	Nannospalax_galili
ENSRNOG00000002080	Urb1	81	45.223	ENSNBRG00000001049	urb1	98	45.079	Neolamprologus_brichardi
ENSRNOG00000002080	Urb1	99	74.383	ENSNLEG00000026872	URB1	99	74.186	Nomascus_leucogenys
ENSRNOG00000002080	Urb1	95	56.942	ENSMEUG00000010828	URB1	96	57.198	Notamacropus_eugenii
ENSRNOG00000002080	Urb1	99	68.366	ENSOPRG00000013482	URB1	100	68.234	Ochotona_princeps
ENSRNOG00000002080	Urb1	100	74.649	ENSODEG00000002587	URB1	100	74.561	Octodon_degus
ENSRNOG00000002080	Urb1	99	43.772	ENSONIG00000005599	urb1	99	43.728	Oreochromis_niloticus
ENSRNOG00000002080	Urb1	99	74.076	ENSOCUG00000009381	URB1	99	73.944	Oryctolagus_cuniculus
ENSRNOG00000002080	Urb1	99	42.807	ENSORLG00000003429	urb1	99	42.658	Oryzias_latipes
ENSRNOG00000002080	Urb1	99	42.708	ENSORLG00020013785	urb1	99	42.559	Oryzias_latipes_hni
ENSRNOG00000002080	Urb1	95	46.121	ENSORLG00015019421	urb1	97	46.121	Oryzias_latipes_hsok
ENSRNOG00000002080	Urb1	77	49.707	ENSOMEG00000002094	urb1	98	49.707	Oryzias_melastigma
ENSRNOG00000002080	Urb1	99	74.967	ENSOGAG00000017140	URB1	99	74.879	Otolemur_garnettii
ENSRNOG00000002080	Urb1	97	71.774	ENSOARG00000013679	URB1	99	71.774	Ovis_aries
ENSRNOG00000002080	Urb1	99	76.473	ENSPPAG00000003423	URB1	99	76.385	Pan_paniscus
ENSRNOG00000002080	Urb1	99	73.460	ENSPPRG00000023131	URB1	99	73.327	Panthera_pardus
ENSRNOG00000002080	Urb1	92	72.410	ENSPTIG00000016125	URB1	97	72.427	Panthera_tigris_altaica
ENSRNOG00000002080	Urb1	99	76.341	ENSPTRG00000013852	URB1	99	76.253	Pan_troglodytes
ENSRNOG00000002080	Urb1	99	76.473	ENSPANG00000021964	URB1	99	76.341	Papio_anubis
ENSRNOG00000002080	Urb1	98	45.205	ENSPKIG00000003683	urb1	98	45.146	Paramormyrops_kingsleyae
ENSRNOG00000002080	Urb1	99	85.966	ENSPEMG00000021205	Urb1	99	85.790	Peromyscus_maniculatus_bairdii
ENSRNOG00000002080	Urb1	77	33.297	ENSPMAG00000009733	URB1	99	33.676	Petromyzon_marinus
ENSRNOG00000002080	Urb1	99	61.279	ENSPCIG00000016350	URB1	99	61.528	Phascolarctos_cinereus
ENSRNOG00000002080	Urb1	96	42.774	ENSPLAG00000004371	urb1	99	42.774	Poecilia_latipinna
ENSRNOG00000002080	Urb1	99	43.668	ENSPMEG00000006634	urb1	99	43.668	Poecilia_mexicana
ENSRNOG00000002080	Urb1	98	43.822	ENSPREG00000013453	urb1	98	43.822	Poecilia_reticulata
ENSRNOG00000002080	Urb1	99	75.649	ENSPPYG00000011359	URB1	99	75.450	Pongo_abelii
ENSRNOG00000002080	Urb1	99	62.792	ENSPCAG00000007430	URB1	99	62.704	Procavia_capensis
ENSRNOG00000002080	Urb1	99	76.199	ENSPCOG00000022695	URB1	99	76.067	Propithecus_coquereli
ENSRNOG00000002080	Urb1	99	72.515	ENSPVAG00000000889	URB1	99	72.383	Pteropus_vampyrus
ENSRNOG00000002080	Urb1	99	42.851	ENSPNYG00000010589	urb1	99	42.624	Pundamilia_nyererei
ENSRNOG00000002080	Urb1	99	39.349	ENSPNAG00000019324	urb1	99	39.479	Pygocentrus_nattereri
ENSRNOG00000002080	Urb1	99	76.033	ENSRBIG00000033122	URB1	99	75.901	Rhinopithecus_bieti
ENSRNOG00000002080	Urb1	99	76.077	ENSRROG00000040237	URB1	99	75.945	Rhinopithecus_roxellana
ENSRNOG00000002080	Urb1	99	76.132	ENSSBOG00000027672	URB1	99	76.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000002080	Urb1	99	61.111	ENSSHAG00000005140	URB1	100	61.067	Sarcophilus_harrisii
ENSRNOG00000002080	Urb1	92	45.172	ENSSFOG00015000339	urb1	99	45.094	Scleropages_formosus
ENSRNOG00000002080	Urb1	99	43.098	ENSSMAG00000003782	urb1	99	43.185	Scophthalmus_maximus
ENSRNOG00000002080	Urb1	99	43.875	ENSSDUG00000012313	urb1	99	43.875	Seriola_dumerili
ENSRNOG00000002080	Urb1	99	43.505	ENSSLDG00000023179	urb1	99	43.505	Seriola_lalandi_dorsalis
ENSRNOG00000002080	Urb1	99	52.974	ENSSPUG00000012447	URB1	99	52.931	Sphenodon_punctatus
ENSRNOG00000002080	Urb1	99	43.106	ENSSPAG00000006325	urb1	99	43.175	Stegastes_partitus
ENSRNOG00000002080	Urb1	99	72.388	ENSSSCG00000032024	URB1	99	72.388	Sus_scrofa
ENSRNOG00000002080	Urb1	73	56.112	ENSTGUG00000013442	URB1	100	56.112	Taeniopygia_guttata
ENSRNOG00000002080	Urb1	99	43.442	ENSTRUG00000009372	urb1	99	43.355	Takifugu_rubripes
ENSRNOG00000002080	Urb1	99	42.719	ENSTNIG00000016277	urb1	99	42.719	Tetraodon_nigroviridis
ENSRNOG00000002080	Urb1	81	77.522	ENSTBEG00000010044	URB1	81	77.522	Tupaia_belangeri
ENSRNOG00000002080	Urb1	90	73.695	ENSTTRG00000007712	URB1	92	74.113	Tursiops_truncatus
ENSRNOG00000002080	Urb1	99	73.295	ENSUAMG00000012231	URB1	99	73.119	Ursus_americanus
ENSRNOG00000002080	Urb1	91	73.615	ENSUMAG00000017419	URB1	98	73.669	Ursus_maritimus
ENSRNOG00000002080	Urb1	68	82.540	ENSVPAG00000001164	URB1	68	82.540	Vicugna_pacos
ENSRNOG00000002080	Urb1	99	73.758	ENSVVUG00000000551	URB1	99	73.626	Vulpes_vulpes
ENSRNOG00000002080	Urb1	99	48.468	ENSXETG00000009895	urb1	99	48.361	Xenopus_tropicalis
ENSRNOG00000002080	Urb1	99	41.104	ENSXCOG00000005500	urb1	99	41.041	Xiphophorus_couchianus
ENSRNOG00000002080	Urb1	99	41.104	ENSXMAG00000007253	urb1	99	40.971	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component