EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRNOG00000002100 (Gene tree)
Gene ID: -
Gene Symbol: LOC108348180
Alias: -
Full Name: signal recognition particle subunit SRP72-like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 112913 bases
Position: chr14:33447591-33560503
Accession: 11405956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000002862	SRP72	PF08492.12	2.1e-16	1	1
ENSRNOP00000061978	SRP72	PF08492.12	9.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000066382	-	1728	-	ENSRNOP00000061978	224 (aa)	XP_017454938	B0BND9
ENSRNOT00000002862	-	3586	-	ENSRNOP00000002862	670 (aa)	-	D4A7R0

Gene Model

Click here to download ENSRNOG00000002100's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002100's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002100	LOC108348180	98	94.962	ENSG00000174780	SRP72	100	94.337	Homo_sapiens
ENSRNOG00000002100	LOC108348180	100	68.093	ENSAPOG00000019438	srp72	99	65.919	Acanthochromis_polyacanthus
ENSRNOG00000002100	LOC108348180	98	94.809	ENSAMEG00000008469	SRP72	99	94.188	Ailuropoda_melanoleuca
ENSRNOG00000002100	LOC108348180	99	74.478	ENSACIG00000000488	srp72	99	73.881	Amphilophus_citrinellus
ENSRNOG00000002100	LOC108348180	100	74.963	ENSAOCG00000011256	srp72	100	74.367	Amphiprion_ocellaris
ENSRNOG00000002100	LOC108348180	100	74.963	ENSAPEG00000001512	srp72	100	74.367	Amphiprion_percula
ENSRNOG00000002100	LOC108348180	91	76.059	ENSATEG00000006781	srp72	99	75.570	Anabas_testudineus
ENSRNOG00000002100	LOC108348180	98	82.273	ENSAPLG00000008751	SRP72	98	81.667	Anas_platyrhynchos
ENSRNOG00000002100	LOC108348180	99	83.560	ENSACAG00000002381	SRP72	99	82.414	Anolis_carolinensis
ENSRNOG00000002100	LOC108348180	100	94.643	ENSANAG00000020836	-	100	94.643	Aotus_nancymaae
ENSRNOG00000002100	LOC108348180	99	75.150	ENSACLG00000014617	srp72	99	74.551	Astatotilapia_calliptera
ENSRNOG00000002100	LOC108348180	99	75.336	ENSAMXG00000004011	srp72	99	74.738	Astyanax_mexicanus
ENSRNOG00000002100	LOC108348180	98	94.656	ENSBTAG00000010593	SRP72	100	94.039	Bos_taurus
ENSRNOG00000002100	LOC108348180	98	93.588	ENSCJAG00000017998	SRP72	100	95.111	Callithrix_jacchus
ENSRNOG00000002100	LOC108348180	98	95.267	ENSCAFG00000002244	SRP72	100	94.635	Canis_familiaris
ENSRNOG00000002100	LOC108348180	98	95.267	ENSCAFG00020027338	SRP72	98	93.997	Canis_lupus_dingo
ENSRNOG00000002100	LOC108348180	98	92.237	ENSCHIG00000021465	SRP72	100	91.679	Capra_hircus
ENSRNOG00000002100	LOC108348180	96	95.363	ENSTSYG00000010571	-	100	95.556	Carlito_syrichta
ENSRNOG00000002100	LOC108348180	93	94.258	ENSCAPG00000016668	SRP72	100	94.222	Cavia_aperea
ENSRNOG00000002100	LOC108348180	98	94.504	ENSCPOG00000000218	SRP72	100	93.890	Cavia_porcellus
ENSRNOG00000002100	LOC108348180	93	95.694	ENSCCAG00000030683	-	100	95.556	Cebus_capucinus
ENSRNOG00000002100	LOC108348180	50	84.071	ENSCCAG00000031330	-	100	75.479	Cebus_capucinus
ENSRNOG00000002100	LOC108348180	98	91.756	ENSCCAG00000030830	-	100	91.207	Cebus_capucinus
ENSRNOG00000002100	LOC108348180	97	75.422	ENSCATG00000045359	-	95	75.926	Cercocebus_atys
ENSRNOG00000002100	LOC108348180	98	94.809	ENSCATG00000008072	SRP72	100	94.188	Cercocebus_atys
ENSRNOG00000002100	LOC108348180	98	94.351	ENSCLAG00000003571	SRP72	100	93.741	Chinchilla_lanigera
ENSRNOG00000002100	LOC108348180	100	88.972	ENSCSAG00000005079	SRP72	100	88.376	Chlorocebus_sabaeus
ENSRNOG00000002100	LOC108348180	90	98.305	ENSCHOG00000013240	SRP72	90	98.305	Choloepus_hoffmanni
ENSRNOG00000002100	LOC108348180	96	83.981	ENSCPBG00000015015	SRP72	100	82.887	Chrysemys_picta_bellii
ENSRNOG00000002100	LOC108348180	94	40.578	ENSCING00000002417	-	98	41.082	Ciona_intestinalis
ENSRNOG00000002100	LOC108348180	94	40.979	ENSCSAVG00000011288	-	98	40.936	Ciona_savignyi
ENSRNOG00000002100	LOC108348180	98	94.809	ENSCANG00000041709	SRP72	100	94.188	Colobus_angolensis_palliatus
ENSRNOG00000002100	LOC108348180	90	76.667	ENSCANG00000037920	-	98	76.596	Colobus_angolensis_palliatus
ENSRNOG00000002100	LOC108348180	100	96.721	ENSCGRG00001013548	Srp72	100	96.721	Cricetulus_griseus_chok1gshd
ENSRNOG00000002100	LOC108348180	94	96.688	ENSCGRG00000003013	Srp72	99	96.688	Cricetulus_griseus_crigri
ENSRNOG00000002100	LOC108348180	99	75.599	ENSCSEG00000003616	srp72	99	75.000	Cynoglossus_semilaevis
ENSRNOG00000002100	LOC108348180	91	75.862	ENSCVAG00000001520	srp72	99	75.205	Cyprinodon_variegatus
ENSRNOG00000002100	LOC108348180	85	74.912	ENSDARG00000014139	srp72	99	73.906	Danio_rerio
ENSRNOG00000002100	LOC108348180	100	89.302	ENSDNOG00000039012	SRP72	83	89.004	Dasypus_novemcinctus
ENSRNOG00000002100	LOC108348180	96	93.798	ENSDORG00000000171	Srp72	99	92.836	Dipodomys_ordii
ENSRNOG00000002100	LOC108348180	92	39.936	FBgn0038810	Srp72	94	39.936	Drosophila_melanogaster
ENSRNOG00000002100	LOC108348180	96	93.478	ENSETEG00000005191	SRP72	100	92.857	Echinops_telfairi
ENSRNOG00000002100	LOC108348180	91	52.282	ENSEBUG00000003696	srp72	96	61.224	Eptatretus_burgeri
ENSRNOG00000002100	LOC108348180	98	94.656	ENSEASG00005017747	SRP72	100	94.039	Equus_asinus_asinus
ENSRNOG00000002100	LOC108348180	98	94.504	ENSECAG00000006920	SRP72	100	93.890	Equus_caballus
ENSRNOG00000002100	LOC108348180	99	74.405	ENSELUG00000022415	srp72	100	74.054	Esox_lucius
ENSRNOG00000002100	LOC108348180	96	95.054	ENSFCAG00000027600	SRP72	100	94.196	Felis_catus
ENSRNOG00000002100	LOC108348180	96	84.006	ENSFALG00000006713	SRP72	99	82.537	Ficedula_albicollis
ENSRNOG00000002100	LOC108348180	97	58.923	ENSFDAG00000009793	-	95	58.923	Fukomys_damarensis
ENSRNOG00000002100	LOC108348180	98	93.893	ENSFDAG00000002014	-	100	93.294	Fukomys_damarensis
ENSRNOG00000002100	LOC108348180	88	75.758	ENSFDAG00000012897	-	96	75.758	Fukomys_damarensis
ENSRNOG00000002100	LOC108348180	99	74.405	ENSFHEG00000017652	srp72	93	74.256	Fundulus_heteroclitus
ENSRNOG00000002100	LOC108348180	97	72.727	ENSGMOG00000005986	srp72	99	72.305	Gadus_morhua
ENSRNOG00000002100	LOC108348180	96	84.424	ENSGALG00000011403	SRP72	100	83.036	Gallus_gallus
ENSRNOG00000002100	LOC108348180	99	75.037	ENSGAFG00000017762	srp72	99	74.439	Gambusia_affinis
ENSRNOG00000002100	LOC108348180	99	73.661	ENSGACG00000016749	srp72	99	73.810	Gasterosteus_aculeatus
ENSRNOG00000002100	LOC108348180	100	84.914	ENSGAGG00000024611	SRP72	99	83.529	Gopherus_agassizii
ENSRNOG00000002100	LOC108348180	98	94.656	ENSGGOG00000013234	-	100	94.667	Gorilla_gorilla
ENSRNOG00000002100	LOC108348180	99	75.299	ENSHBUG00000020723	srp72	99	74.701	Haplochromis_burtoni
ENSRNOG00000002100	LOC108348180	97	72.477	ENSHGLG00000018597	-	100	72.578	Heterocephalus_glaber_female
ENSRNOG00000002100	LOC108348180	92	61.966	ENSHGLG00000003496	-	97	73.451	Heterocephalus_glaber_female
ENSRNOG00000002100	LOC108348180	96	86.574	ENSHGLG00000010633	-	98	85.175	Heterocephalus_glaber_female
ENSRNOG00000002100	LOC108348180	86	93.886	ENSHGLG00000003950	-	100	93.886	Heterocephalus_glaber_female
ENSRNOG00000002100	LOC108348180	98	94.351	ENSHGLG00000009791	SRP72	100	93.741	Heterocephalus_glaber_female
ENSRNOG00000002100	LOC108348180	98	88.244	ENSHGLG00000005029	-	100	87.630	Heterocephalus_glaber_female
ENSRNOG00000002100	LOC108348180	98	94.351	ENSHGLG00100009021	SRP72	100	93.741	Heterocephalus_glaber_male
ENSRNOG00000002100	LOC108348180	56	90.476	ENSHGLG00100006071	-	100	77.358	Heterocephalus_glaber_male
ENSRNOG00000002100	LOC108348180	86	93.450	ENSHGLG00100017133	-	100	93.450	Heterocephalus_glaber_male
ENSRNOG00000002100	LOC108348180	98	71.254	ENSHGLG00100009346	-	100	71.642	Heterocephalus_glaber_male
ENSRNOG00000002100	LOC108348180	98	88.244	ENSHGLG00100011236	-	100	87.630	Heterocephalus_glaber_male
ENSRNOG00000002100	LOC108348180	99	75.262	ENSHCOG00000013760	srp72	99	74.663	Hippocampus_comes
ENSRNOG00000002100	LOC108348180	99	74.663	ENSIPUG00000000210	srp72	99	74.063	Ictalurus_punctatus
ENSRNOG00000002100	LOC108348180	98	95.267	ENSSTOG00000007305	SRP72	100	94.635	Ictidomys_tridecemlineatus
ENSRNOG00000002100	LOC108348180	96	93.935	ENSJJAG00000018324	Srp72	100	92.868	Jaculus_jaculus
ENSRNOG00000002100	LOC108348180	99	73.991	ENSKMAG00000003776	srp72	99	73.503	Kryptolebias_marmoratus
ENSRNOG00000002100	LOC108348180	97	77.454	ENSLOCG00000002628	srp72	97	77.112	Lepisosteus_oculatus
ENSRNOG00000002100	LOC108348180	98	94.504	ENSLAFG00000018307	SRP72	100	93.890	Loxodonta_africana
ENSRNOG00000002100	LOC108348180	98	76.220	ENSMFAG00000037164	-	97	76.935	Macaca_fascicularis
ENSRNOG00000002100	LOC108348180	98	94.656	ENSMFAG00000031065	SRP72	100	94.039	Macaca_fascicularis
ENSRNOG00000002100	LOC108348180	94	72.803	ENSMMUG00000021262	-	95	69.760	Macaca_mulatta
ENSRNOG00000002100	LOC108348180	98	94.689	ENSMMUG00000016368	SRP72	97	94.046	Macaca_mulatta
ENSRNOG00000002100	LOC108348180	98	94.656	ENSMNEG00000038065	-	100	94.039	Macaca_nemestrina
ENSRNOG00000002100	LOC108348180	95	93.417	ENSMLEG00000030140	-	95	92.633	Mandrillus_leucophaeus
ENSRNOG00000002100	LOC108348180	99	74.963	ENSMAMG00000014989	srp72	89	74.367	Mastacembelus_armatus
ENSRNOG00000002100	LOC108348180	99	75.299	ENSMZEG00005003325	srp72	99	74.701	Maylandia_zebra
ENSRNOG00000002100	LOC108348180	95	80.472	ENSMGAG00000008567	SRP72	100	83.547	Meleagris_gallopavo
ENSRNOG00000002100	LOC108348180	100	96.429	ENSMAUG00000001237	Srp72	100	96.429	Mesocricetus_auratus
ENSRNOG00000002100	LOC108348180	95	93.417	ENSMICG00000008507	-	100	91.964	Microcebus_murinus
ENSRNOG00000002100	LOC108348180	100	96.572	ENSMOCG00000020309	Srp72	100	96.572	Microtus_ochrogaster
ENSRNOG00000002100	LOC108348180	99	73.503	ENSMMOG00000002627	srp72	99	73.353	Mola_mola
ENSRNOG00000002100	LOC108348180	96	83.801	ENSMODG00000020697	SRP72	100	83.308	Monodelphis_domestica
ENSRNOG00000002100	LOC108348180	100	74.236	ENSMALG00000003747	srp72	100	74.380	Monopterus_albus
ENSRNOG00000002100	LOC108348180	100	96.721	MGP_CAROLIEiJ_G0027323	Srp72	100	96.721	Mus_caroli
ENSRNOG00000002100	LOC108348180	100	96.721	ENSMUSG00000036323	Srp72	100	96.721	Mus_musculus
ENSRNOG00000002100	LOC108348180	100	96.434	MGP_PahariEiJ_G0017103	Srp72	100	96.434	Mus_pahari
ENSRNOG00000002100	LOC108348180	100	96.721	MGP_SPRETEiJ_G0028317	Srp72	100	96.721	Mus_spretus
ENSRNOG00000002100	LOC108348180	96	94.712	ENSMPUG00000004828	SRP72	100	93.741	Mustela_putorius_furo
ENSRNOG00000002100	LOC108348180	96	94.109	ENSMLUG00000007344	SRP72	99	93.145	Myotis_lucifugus
ENSRNOG00000002100	LOC108348180	100	94.635	ENSNGAG00000012595	Srp72	100	94.039	Nannospalax_galili
ENSRNOG00000002100	LOC108348180	99	72.006	ENSNBRG00000014492	srp72	99	71.407	Neolamprologus_brichardi
ENSRNOG00000002100	LOC108348180	92	95.192	ENSNLEG00000008806	-	100	94.667	Nomascus_leucogenys
ENSRNOG00000002100	LOC108348180	89	88.288	ENSMEUG00000005164	SRP72	90	87.850	Notamacropus_eugenii
ENSRNOG00000002100	LOC108348180	96	92.056	ENSOPRG00000012521	SRP72	100	91.356	Ochotona_princeps
ENSRNOG00000002100	LOC108348180	98	91.463	ENSODEG00000012214	SRP72	100	90.923	Octodon_degus
ENSRNOG00000002100	LOC108348180	99	75.112	ENSONIG00000001446	srp72	99	74.516	Oreochromis_niloticus
ENSRNOG00000002100	LOC108348180	96	69.385	ENSOANG00000008562	SRP72	97	69.254	Ornithorhynchus_anatinus
ENSRNOG00000002100	LOC108348180	97	94.190	ENSOCUG00000012226	SRP72	100	93.443	Oryctolagus_cuniculus
ENSRNOG00000002100	LOC108348180	99	74.063	ENSORLG00000020418	srp72	99	73.613	Oryzias_latipes
ENSRNOG00000002100	LOC108348180	99	73.613	ENSORLG00020009138	srp72	98	72.264	Oryzias_latipes_hni
ENSRNOG00000002100	LOC108348180	99	73.463	ENSORLG00015018251	srp72	99	73.013	Oryzias_latipes_hsok
ENSRNOG00000002100	LOC108348180	99	72.864	ENSOMEG00000022008	srp72	99	72.714	Oryzias_melastigma
ENSRNOG00000002100	LOC108348180	98	94.351	ENSOGAG00000003578	SRP72	100	93.741	Otolemur_garnettii
ENSRNOG00000002100	LOC108348180	98	94.656	ENSOARG00000004329	SRP72	100	94.039	Ovis_aries
ENSRNOG00000002100	LOC108348180	79	82.386	ENSPPAG00000032490	-	91	74.212	Pan_paniscus
ENSRNOG00000002100	LOC108348180	99	68.381	ENSPPAG00000011428	-	95	69.525	Pan_paniscus
ENSRNOG00000002100	LOC108348180	98	94.962	ENSPPAG00000042265	SRP72	100	94.667	Pan_paniscus
ENSRNOG00000002100	LOC108348180	98	94.962	ENSPPRG00000015991	SRP72	100	94.337	Panthera_pardus
ENSRNOG00000002100	LOC108348180	98	94.962	ENSPTIG00000018786	SRP72	100	94.337	Panthera_tigris_altaica
ENSRNOG00000002100	LOC108348180	82	79.235	ENSPTRG00000043609	-	95	75.956	Pan_troglodytes
ENSRNOG00000002100	LOC108348180	98	94.962	ENSPTRG00000048466	-	100	94.667	Pan_troglodytes
ENSRNOG00000002100	LOC108348180	99	70.242	ENSPTRG00000048100	-	95	71.407	Pan_troglodytes
ENSRNOG00000002100	LOC108348180	94	74.960	ENSPANG00000030230	-	97	75.399	Papio_anubis
ENSRNOG00000002100	LOC108348180	98	94.809	ENSPANG00000005495	SRP72	100	94.188	Papio_anubis
ENSRNOG00000002100	LOC108348180	93	83.866	ENSPSIG00000003003	SRP72	100	83.489	Pelodiscus_sinensis
ENSRNOG00000002100	LOC108348180	100	95.994	ENSPEMG00000012828	-	100	95.994	Peromyscus_maniculatus_bairdii
ENSRNOG00000002100	LOC108348180	90	61.765	ENSPMAG00000008885	-	92	61.244	Petromyzon_marinus
ENSRNOG00000002100	LOC108348180	96	87.461	ENSPCIG00000000732	SRP72	99	86.567	Phascolarctos_cinereus
ENSRNOG00000002100	LOC108348180	99	74.888	ENSPFOG00000003480	srp72	99	74.401	Poecilia_formosa
ENSRNOG00000002100	LOC108348180	99	75.037	ENSPLAG00000020122	srp72	99	74.551	Poecilia_latipinna
ENSRNOG00000002100	LOC108348180	99	74.589	ENSPMEG00000019988	srp72	99	74.102	Poecilia_mexicana
ENSRNOG00000002100	LOC108348180	99	74.738	ENSPREG00000006218	srp72	99	74.251	Poecilia_reticulata
ENSRNOG00000002100	LOC108348180	93	72.727	ENSPPYG00000009152	-	95	77.165	Pongo_abelii
ENSRNOG00000002100	LOC108348180	100	94.933	ENSPPYG00000014752	-	78	94.784	Pongo_abelii
ENSRNOG00000002100	LOC108348180	98	93.130	ENSPVAG00000005590	SRP72	100	92.548	Pteropus_vampyrus
ENSRNOG00000002100	LOC108348180	99	75.599	ENSPNYG00000001916	srp72	99	75.000	Pundamilia_nyererei
ENSRNOG00000002100	LOC108348180	99	75.635	ENSPNAG00000022424	srp72	99	75.037	Pygocentrus_nattereri
ENSRNOG00000002100	LOC108348180	98	88.685	ENSRBIG00000042069	SRP72	100	89.104	Rhinopithecus_bieti
ENSRNOG00000002100	LOC108348180	98	74.206	ENSRBIG00000029328	-	98	72.931	Rhinopithecus_bieti
ENSRNOG00000002100	LOC108348180	64	71.098	ENSRROG00000042114	-	97	75.093	Rhinopithecus_roxellana
ENSRNOG00000002100	LOC108348180	98	94.809	ENSRROG00000035704	SRP72	100	94.188	Rhinopithecus_roxellana
ENSRNOG00000002100	LOC108348180	97	85.911	ENSSHAG00000000614	SRP72	100	83.531	Sarcophilus_harrisii
ENSRNOG00000002100	LOC108348180	99	76.762	ENSSFOG00015002026	srp72	99	76.162	Scleropages_formosus
ENSRNOG00000002100	LOC108348180	99	73.174	ENSSMAG00000007639	srp72	99	72.985	Scophthalmus_maximus
ENSRNOG00000002100	LOC108348180	99	75.373	ENSSDUG00000007345	srp72	99	75.373	Seriola_dumerili
ENSRNOG00000002100	LOC108348180	99	75.410	ENSSLDG00000021819	srp72	99	75.262	Seriola_lalandi_dorsalis
ENSRNOG00000002100	LOC108348180	93	81.328	ENSSARG00000005804	SRP72	77	88.384	Sorex_araneus
ENSRNOG00000002100	LOC108348180	96	83.333	ENSSPUG00000009740	SRP72	99	82.090	Sphenodon_punctatus
ENSRNOG00000002100	LOC108348180	99	74.551	ENSSPAG00000011565	srp72	99	74.663	Stegastes_partitus
ENSRNOG00000002100	LOC108348180	99	92.006	ENSSSCG00000008900	SRP72	100	91.220	Sus_scrofa
ENSRNOG00000002100	LOC108348180	96	84.006	ENSTGUG00000004767	SRP72	99	82.265	Taeniopygia_guttata
ENSRNOG00000002100	LOC108348180	99	74.363	ENSTRUG00000009831	srp72	99	73.874	Takifugu_rubripes
ENSRNOG00000002100	LOC108348180	99	75.410	ENSTNIG00000013073	srp72	99	74.814	Tetraodon_nigroviridis
ENSRNOG00000002100	LOC108348180	78	96.552	ENSTBEG00000007394	SRP72	90	83.898	Tupaia_belangeri
ENSRNOG00000002100	LOC108348180	92	94.175	ENSTTRG00000010945	SRP72	100	93.533	Tursiops_truncatus
ENSRNOG00000002100	LOC108348180	93	82.988	ENSUAMG00000001701	SRP72	100	92.105	Ursus_americanus
ENSRNOG00000002100	LOC108348180	98	94.809	ENSUMAG00000008151	SRP72	100	94.188	Ursus_maritimus
ENSRNOG00000002100	LOC108348180	98	92.977	ENSVPAG00000000458	SRP72	100	92.399	Vicugna_pacos
ENSRNOG00000002100	LOC108348180	98	95.115	ENSVVUG00000006020	SRP72	100	94.486	Vulpes_vulpes
ENSRNOG00000002100	LOC108348180	95	76.295	ENSXETG00000010205	srp72	100	75.981	Xenopus_tropicalis
ENSRNOG00000002100	LOC108348180	100	74.107	ENSXCOG00000015488	srp72	100	74.107	Xiphophorus_couchianus
ENSRNOG00000002100	LOC108348180	99	74.439	ENSXMAG00000018000	srp72	99	73.958	Xiphophorus_maculatus