EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002104 (Gene tree)
Gene ID: 245924
Gene Symbol: Scaf4
Alias: LOC245924|Sfrs15|Srsf15
Full Name: SR-related CTD-associated factor 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 56361 bases
Position: chr11:30371713-30428073
Accession: 727896
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000002881	RRM_1	PF00076.22	2.2e-09	1	1
ENSRNOP00000047258	RRM_1	PF00076.22	3.3e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000002881	-	2760	-	ENSRNOP00000002881	919 (aa)	-	F1M994
ENSRNOT00000047741	-	4304	XM_006248024	ENSRNOP00000047258	1200 (aa)	-	F1LSM7

Gene Model

Click here to download ENSRNOG00000002104's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002104's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002104	Scaf4	95	86.923	ENSG00000156304	SCAF4	98	86.997	Homo_sapiens
ENSRNOG00000002104	Scaf4	57	56.667	ENSAPOG00000019615	scaf4b	55	73.418	Acanthochromis_polyacanthus
ENSRNOG00000002104	Scaf4	59	84.535	ENSAMEG00000014987	SCAF4	95	83.333	Ailuropoda_melanoleuca
ENSRNOG00000002104	Scaf4	99	74.611	ENSAPLG00000002509	SCAF4	63	90.295	Anas_platyrhynchos
ENSRNOG00000002104	Scaf4	95	86.154	ENSANAG00000037494	SCAF4	98	86.667	Aotus_nancymaae
ENSRNOG00000002104	Scaf4	56	64.504	ENSACLG00000024833	scaf4b	55	75.316	Astatotilapia_calliptera
ENSRNOG00000002104	Scaf4	99	85.090	ENSBTAG00000018855	SCAF4	98	86.096	Bos_taurus
ENSRNOG00000002104	Scaf4	95	85.897	ENSCJAG00000008993	SCAF4	98	88.000	Callithrix_jacchus
ENSRNOG00000002104	Scaf4	94	83.684	ENSCAFG00000008863	SCAF4	98	84.932	Canis_familiaris
ENSRNOG00000002104	Scaf4	94	83.733	ENSCAFG00020026019	SCAF4	98	83.333	Canis_lupus_dingo
ENSRNOG00000002104	Scaf4	99	84.359	ENSCHIG00000008385	SCAF4	98	85.333	Capra_hircus
ENSRNOG00000002104	Scaf4	91	86.503	ENSTSYG00000011344	SCAF4	96	86.503	Carlito_syrichta
ENSRNOG00000002104	Scaf4	99	82.432	ENSCPOG00000012443	SCAF4	98	87.668	Cavia_porcellus
ENSRNOG00000002104	Scaf4	95	85.897	ENSCCAG00000033727	SCAF4	98	88.000	Cebus_capucinus
ENSRNOG00000002104	Scaf4	98	85.897	ENSCATG00000030379	SCAF4	98	85.600	Cercocebus_atys
ENSRNOG00000002104	Scaf4	97	84.000	ENSCLAG00000006298	SCAF4	98	84.896	Chinchilla_lanigera
ENSRNOG00000002104	Scaf4	95	86.410	ENSCSAG00000009438	SCAF4	98	86.400	Chlorocebus_sabaeus
ENSRNOG00000002104	Scaf4	95	86.667	ENSCANG00000029847	SCAF4	98	86.400	Colobus_angolensis_palliatus
ENSRNOG00000002104	Scaf4	99	84.647	ENSCGRG00001020821	Scaf4	100	83.211	Cricetulus_griseus_chok1gshd
ENSRNOG00000002104	Scaf4	99	84.749	ENSCGRG00000014360	Scaf4	100	81.382	Cricetulus_griseus_crigri
ENSRNOG00000002104	Scaf4	98	77.738	ENSDNOG00000019014	SCAF4	76	86.051	Dasypus_novemcinctus
ENSRNOG00000002104	Scaf4	87	75.485	ENSETEG00000000583	SCAF4	97	70.110	Echinops_telfairi
ENSRNOG00000002104	Scaf4	95	85.090	ENSEASG00005007756	SCAF4	98	87.166	Equus_asinus_asinus
ENSRNOG00000002104	Scaf4	95	84.833	ENSECAG00000014248	SCAF4	98	86.898	Equus_caballus
ENSRNOG00000002104	Scaf4	73	95.781	ENSFCAG00000002228	SCAF4	62	89.831	Felis_catus
ENSRNOG00000002104	Scaf4	99	78.978	ENSFDAG00000017780	SCAF4	98	80.800	Fukomys_damarensis
ENSRNOG00000002104	Scaf4	55	61.194	ENSFHEG00000007634	scaf4b	52	79.137	Fundulus_heteroclitus
ENSRNOG00000002104	Scaf4	99	75.578	ENSGALG00000033965	SCAF4	63	67.778	Gallus_gallus
ENSRNOG00000002104	Scaf4	53	61.660	ENSGAFG00000019460	scaf4a	55	75.610	Gambusia_affinis
ENSRNOG00000002104	Scaf4	66	54.034	ENSGACG00000020580	scaf4a	53	71.341	Gasterosteus_aculeatus
ENSRNOG00000002104	Scaf4	91	86.923	ENSGGOG00000015557	SCAF4	97	86.933	Gorilla_gorilla
ENSRNOG00000002104	Scaf4	99	83.459	ENSHGLG00000010582	SCAF4	98	84.115	Heterocephalus_glaber_female
ENSRNOG00000002104	Scaf4	97	82.857	ENSHGLG00100009441	SCAF4	98	83.514	Heterocephalus_glaber_male
ENSRNOG00000002104	Scaf4	64	59.591	ENSIPUG00000011285	scaf4	52	75.610	Ictalurus_punctatus
ENSRNOG00000002104	Scaf4	84	86.937	ENSSTOG00000004450	SCAF4	98	84.766	Ictidomys_tridecemlineatus
ENSRNOG00000002104	Scaf4	91	88.487	ENSJJAG00000019447	Scaf4	98	88.102	Jaculus_jaculus
ENSRNOG00000002104	Scaf4	61	55.702	ENSKMAG00000005742	scaf4b	54	75.159	Kryptolebias_marmoratus
ENSRNOG00000002104	Scaf4	78	65.782	ENSLACG00000013913	SCAF4	57	73.234	Latimeria_chalumnae
ENSRNOG00000002104	Scaf4	80	62.972	ENSLOCG00000009162	scaf4a	59	69.792	Lepisosteus_oculatus
ENSRNOG00000002104	Scaf4	94	83.551	ENSLAFG00000010710	SCAF4	100	78.293	Loxodonta_africana
ENSRNOG00000002104	Scaf4	98	85.897	ENSMFAG00000037668	SCAF4	98	85.600	Macaca_fascicularis
ENSRNOG00000002104	Scaf4	98	85.897	ENSMMUG00000001712	SCAF4	98	85.600	Macaca_mulatta
ENSRNOG00000002104	Scaf4	98	85.897	ENSMNEG00000032966	SCAF4	98	85.600	Macaca_nemestrina
ENSRNOG00000002104	Scaf4	97	85.000	ENSMLEG00000039674	SCAF4	98	85.205	Mandrillus_leucophaeus
ENSRNOG00000002104	Scaf4	99	75.000	ENSMGAG00000014515	SCAF4	64	67.222	Meleagris_gallopavo
ENSRNOG00000002104	Scaf4	91	88.122	ENSMAUG00000013307	Scaf4	99	88.122	Mesocricetus_auratus
ENSRNOG00000002104	Scaf4	98	85.347	ENSMICG00000005256	SCAF4	98	87.433	Microcebus_murinus
ENSRNOG00000002104	Scaf4	100	85.323	ENSMOCG00000012087	Scaf4	100	84.890	Microtus_ochrogaster
ENSRNOG00000002104	Scaf4	80	89.124	ENSMODG00000021040	SCAF4	82	84.420	Monodelphis_domestica
ENSRNOG00000002104	Scaf4	100	92.833	MGP_CAROLIEiJ_G0020944	Scaf4	100	92.500	Mus_caroli
ENSRNOG00000002104	Scaf4	100	92.000	ENSMUSG00000022983	Scaf4	100	91.500	Mus_musculus
ENSRNOG00000002104	Scaf4	100	92.033	MGP_PahariEiJ_G0016649	Scaf4	100	89.262	Mus_pahari
ENSRNOG00000002104	Scaf4	100	92.250	MGP_SPRETEiJ_G0021850	Scaf4	100	91.750	Mus_spretus
ENSRNOG00000002104	Scaf4	95	82.166	ENSMPUG00000001078	SCAF4	60	89.831	Mustela_putorius_furo
ENSRNOG00000002104	Scaf4	91	81.096	ENSMLUG00000011472	SCAF4	59	91.667	Myotis_lucifugus
ENSRNOG00000002104	Scaf4	99	87.728	ENSNGAG00000005214	Scaf4	99	80.571	Nannospalax_galili
ENSRNOG00000002104	Scaf4	96	85.323	ENSNLEG00000003569	SCAF4	98	86.933	Nomascus_leucogenys
ENSRNOG00000002104	Scaf4	66	95.359	ENSOPRG00000007016	SCAF4	75	84.973	Ochotona_princeps
ENSRNOG00000002104	Scaf4	95	83.269	ENSODEG00000002718	SCAF4	98	84.375	Octodon_degus
ENSRNOG00000002104	Scaf4	68	55.952	ENSONIG00000004687	scaf4a	50	74.390	Oreochromis_niloticus
ENSRNOG00000002104	Scaf4	94	85.233	ENSOCUG00000008336	SCAF4	98	86.881	Oryctolagus_cuniculus
ENSRNOG00000002104	Scaf4	57	65.116	ENSORLG00000004384	scaf4a	52	46.799	Oryzias_latipes
ENSRNOG00000002104	Scaf4	65	54.167	ENSORLG00000003420	scaf4b	64	61.538	Oryzias_latipes
ENSRNOG00000002104	Scaf4	99	75.632	ENSOGAG00000014653	SCAF4	57	90.113	Otolemur_garnettii
ENSRNOG00000002104	Scaf4	97	82.895	ENSOARG00000013894	SCAF4	80	86.051	Ovis_aries
ENSRNOG00000002104	Scaf4	95	86.923	ENSPPAG00000028535	SCAF4	98	86.933	Pan_paniscus
ENSRNOG00000002104	Scaf4	73	95.781	ENSPPRG00000000635	SCAF4	62	89.831	Panthera_pardus
ENSRNOG00000002104	Scaf4	94	80.739	ENSPTIG00000021578	SCAF4	80	81.868	Panthera_tigris_altaica
ENSRNOG00000002104	Scaf4	95	86.923	ENSPTRG00000013848	SCAF4	98	86.933	Pan_troglodytes
ENSRNOG00000002104	Scaf4	98	85.897	ENSPANG00000017332	SCAF4	98	85.600	Papio_anubis
ENSRNOG00000002104	Scaf4	63	72.619	ENSPKIG00000022408	scaf4a	72	79.114	Paramormyrops_kingsleyae
ENSRNOG00000002104	Scaf4	74	89.540	ENSPSIG00000014242	SCAF4	61	89.916	Pelodiscus_sinensis
ENSRNOG00000002104	Scaf4	84	82.243	ENSPCIG00000028183	SCAF4	90	78.255	Phascolarctos_cinereus
ENSRNOG00000002104	Scaf4	64	56.168	ENSPFOG00000017156	scaf4a	53	73.780	Poecilia_formosa
ENSRNOG00000002104	Scaf4	54	64.844	ENSPLAG00000001972	scaf4a	61	74.390	Poecilia_latipinna
ENSRNOG00000002104	Scaf4	52	62.814	ENSPLAG00000004403	-	53	71.338	Poecilia_latipinna
ENSRNOG00000002104	Scaf4	52	63.317	ENSPMEG00000006666	-	54	72.611	Poecilia_mexicana
ENSRNOG00000002104	Scaf4	95	86.923	ENSPPYG00000011355	SCAF4	98	86.933	Pongo_abelii
ENSRNOG00000002104	Scaf4	92	74.599	ENSPCAG00000009998	SCAF4	93	82.609	Procavia_capensis
ENSRNOG00000002104	Scaf4	99	85.604	ENSPCOG00000018710	SCAF4	98	85.561	Propithecus_coquereli
ENSRNOG00000002104	Scaf4	99	84.833	ENSPVAG00000005220	SCAF4	61	89.548	Pteropus_vampyrus
ENSRNOG00000002104	Scaf4	54	63.740	ENSPNYG00000010526	scaf4b	55	75.316	Pundamilia_nyererei
ENSRNOG00000002104	Scaf4	94	83.777	ENSRBIG00000040007	SCAF4	98	83.060	Rhinopithecus_bieti
ENSRNOG00000002104	Scaf4	95	86.041	ENSRROG00000029488	SCAF4	98	86.400	Rhinopithecus_roxellana
ENSRNOG00000002104	Scaf4	66	92.118	ENSSHAG00000001581	SCAF4	98	75.668	Sarcophilus_harrisii
ENSRNOG00000002104	Scaf4	60	59.480	ENSSMAG00000003738	scaf4b	54	72.785	Scophthalmus_maximus
ENSRNOG00000002104	Scaf4	51	62.771	ENSSDUG00000012380	scaf4b	54	71.519	Seriola_dumerili
ENSRNOG00000002104	Scaf4	60	62.771	ENSSLDG00000023152	-	54	71.519	Seriola_lalandi_dorsalis
ENSRNOG00000002104	Scaf4	97	82.245	ENSSARG00000009994	SCAF4	98	82.620	Sorex_araneus
ENSRNOG00000002104	Scaf4	95	85.132	ENSSSCG00000021023	SCAF4	98	86.577	Sus_scrofa
ENSRNOG00000002104	Scaf4	60	87.903	ENSTGUG00000013464	SCAF4	62	67.222	Taeniopygia_guttata
ENSRNOG00000002104	Scaf4	55	67.327	ENSTRUG00000009536	-	64	60.664	Takifugu_rubripes
ENSRNOG00000002104	Scaf4	94	84.960	ENSTTRG00000010963	SCAF4	98	86.538	Tursiops_truncatus
ENSRNOG00000002104	Scaf4	95	83.968	ENSUAMG00000008860	SCAF4	98	86.096	Ursus_americanus
ENSRNOG00000002104	Scaf4	94	80.332	ENSUMAG00000016962	SCAF4	98	82.778	Ursus_maritimus
ENSRNOG00000002104	Scaf4	94	83.733	ENSVVUG00000002953	SCAF4	98	85.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006397	mRNA processing	8692929.	IMP	Process
GO:0008022	protein C-terminus binding	8692929.	IPI	Function