EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002275 (Gene tree)
Gene ID: 289582
Gene Symbol: Fip1l1
Alias: LOC289582|MGC93674
Full Name: factor interacting with PAPOLA and CPSF1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 57975 bases
Position: chr14:36150399-36208373
Accession: 1309336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000049728	Fip1	PF05182.13	8e-25	1	1
ENSRNOP00000072529	Fip1	PF05182.13	8.9e-25	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000088448	-	2162	XM_006250882	ENSRNOP00000072529	581 (aa)	XP_006250944	A0A0G2K376
ENSRNOT00000045050	-	1894	-	ENSRNOP00000049728	536 (aa)	-	Q5U317

Gene Model

Click here to download ENSRNOG00000002275's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002275	Fip1l1	72	78.947	ENSACIG00000001454	fip1l1b	73	67.196	Amphilophus_citrinellus
ENSRNOG00000002275	Fip1l1	99	55.369	ENSAOCG00000021043	fip1l1b	84	58.281	Amphiprion_ocellaris
ENSRNOG00000002275	Fip1l1	99	55.369	ENSAPEG00000022229	fip1l1b	84	58.281	Amphiprion_percula
ENSRNOG00000002275	Fip1l1	99	59.397	ENSATEG00000021757	fip1l1b	83	59.913	Anabas_testudineus
ENSRNOG00000002275	Fip1l1	91	75.045	ENSAPLG00000003042	-	98	74.955	Anas_platyrhynchos
ENSRNOG00000002275	Fip1l1	90	84.103	ENSACAG00000010556	-	97	80.492	Anolis_carolinensis
ENSRNOG00000002275	Fip1l1	99	58.273	ENSACLG00000010418	fip1l1b	83	59.041	Astatotilapia_calliptera
ENSRNOG00000002275	Fip1l1	56	55.657	ENSAMXG00000011126	fip1l1b	74	61.258	Astyanax_mexicanus
ENSRNOG00000002275	Fip1l1	59	39.818	ENSAMXG00000031045	fip1l1a	54	50.526	Astyanax_mexicanus
ENSRNOG00000002275	Fip1l1	100	87.136	ENSBTAG00000020653	FIP1L1	100	90.128	Bos_taurus
ENSRNOG00000002275	Fip1l1	100	86.469	ENSCHIG00000025903	-	100	88.596	Capra_hircus
ENSRNOG00000002275	Fip1l1	91	83.491	ENSCAPG00000009569	-	98	88.713	Cavia_aperea
ENSRNOG00000002275	Fip1l1	96	96.768	ENSCPOG00000010770	-	100	95.871	Cavia_porcellus
ENSRNOG00000002275	Fip1l1	100	83.721	ENSCPBG00000025019	-	94	89.881	Chrysemys_picta_bellii
ENSRNOG00000002275	Fip1l1	100	98.795	ENSCGRG00001018568	Fip1l1	100	98.795	Cricetulus_griseus_chok1gshd
ENSRNOG00000002275	Fip1l1	100	98.795	ENSCGRG00000000208	Fip1l1	100	98.795	Cricetulus_griseus_crigri
ENSRNOG00000002275	Fip1l1	99	57.324	ENSCSEG00000006583	fip1l1b	83	60.746	Cynoglossus_semilaevis
ENSRNOG00000002275	Fip1l1	99	58.707	ENSCVAG00000023435	fip1l1b	83	58.696	Cyprinodon_variegatus
ENSRNOG00000002275	Fip1l1	90	75.325	ENSETEG00000018271	-	100	75.325	Echinops_telfairi
ENSRNOG00000002275	Fip1l1	100	91.667	ENSEASG00005019566	-	100	91.061	Equus_asinus_asinus
ENSRNOG00000002275	Fip1l1	75	87.255	ENSEEUG00000004965	-	71	87.010	Erinaceus_europaeus
ENSRNOG00000002275	Fip1l1	97	58.258	ENSFHEG00000003843	fip1l1b	70	59.221	Fundulus_heteroclitus
ENSRNOG00000002275	Fip1l1	99	50.931	ENSGMOG00000004913	fip1l1b	74	52.370	Gadus_morhua
ENSRNOG00000002275	Fip1l1	65	32.500	ENSGMOG00000012065	-	53	41.053	Gadus_morhua
ENSRNOG00000002275	Fip1l1	100	80.037	ENSGALG00000013943	-	100	79.670	Gallus_gallus
ENSRNOG00000002275	Fip1l1	81	63.537	ENSGAFG00000008253	fip1l1b	82	58.672	Gambusia_affinis
ENSRNOG00000002275	Fip1l1	99	52.310	ENSGACG00000015946	fip1l1b	86	55.577	Gasterosteus_aculeatus
ENSRNOG00000002275	Fip1l1	100	83.721	ENSGAGG00000009763	-	93	89.881	Gopherus_agassizii
ENSRNOG00000002275	Fip1l1	99	58.273	ENSHBUG00000013978	fip1l1b	87	57.442	Haplochromis_burtoni
ENSRNOG00000002275	Fip1l1	99	58.750	ENSHCOG00000015834	fip1l1b	70	59.653	Hippocampus_comes
ENSRNOG00000002275	Fip1l1	96	53.160	ENSIPUG00000022454	fip1l1b	88	48.868	Ictalurus_punctatus
ENSRNOG00000002275	Fip1l1	99	56.383	ENSKMAG00000021938	fip1l1b	83	58.170	Kryptolebias_marmoratus
ENSRNOG00000002275	Fip1l1	99	55.294	ENSLBEG00000028819	fip1l1b	83	60.241	Labrus_bergylta
ENSRNOG00000002275	Fip1l1	100	66.906	ENSLACG00000011991	fip1l1a	97	62.136	Latimeria_chalumnae
ENSRNOG00000002275	Fip1l1	99	57.596	ENSLOCG00000014127	fip1l1b	92	58.582	Lepisosteus_oculatus
ENSRNOG00000002275	Fip1l1	99	56.607	ENSMAMG00000004535	fip1l1b	83	58.952	Mastacembelus_armatus
ENSRNOG00000002275	Fip1l1	99	58.273	ENSMZEG00005023828	fip1l1b	83	59.041	Maylandia_zebra
ENSRNOG00000002275	Fip1l1	90	85.685	ENSMGAG00000011885	-	97	85.685	Meleagris_gallopavo
ENSRNOG00000002275	Fip1l1	100	93.460	ENSMAUG00000010526	Fip1l1	100	93.460	Mesocricetus_auratus
ENSRNOG00000002275	Fip1l1	100	98.321	ENSMOCG00000008020	Fip1l1	100	98.321	Microtus_ochrogaster
ENSRNOG00000002275	Fip1l1	84	85.968	ENSMODG00000020654	-	93	85.178	Monodelphis_domestica
ENSRNOG00000002275	Fip1l1	82	56.531	ENSMALG00000000838	fip1l1b	79	61.386	Monopterus_albus
ENSRNOG00000002275	Fip1l1	100	100.000	MGP_CAROLIEiJ_G0027304	Fip1l1	100	100.000	Mus_caroli
ENSRNOG00000002275	Fip1l1	100	100.000	ENSMUSG00000029227	Fip1l1	100	100.000	Mus_musculus
ENSRNOG00000002275	Fip1l1	100	100.000	MGP_PahariEiJ_G0017085	Fip1l1	100	100.000	Mus_pahari
ENSRNOG00000002275	Fip1l1	100	100.000	MGP_SPRETEiJ_G0028299	Fip1l1	100	100.000	Mus_spretus
ENSRNOG00000002275	Fip1l1	100	98.321	ENSNGAG00000008849	Fip1l1	100	98.321	Nannospalax_galili
ENSRNOG00000002275	Fip1l1	99	56.879	ENSNBRG00000017832	fip1l1b	84	57.287	Neolamprologus_brichardi
ENSRNOG00000002275	Fip1l1	54	55.255	ENSMEUG00000012782	-	69	89.655	Notamacropus_eugenii
ENSRNOG00000002275	Fip1l1	99	56.514	ENSONIG00000008785	fip1l1b	84	56.883	Oreochromis_niloticus
ENSRNOG00000002275	Fip1l1	91	77.184	ENSOANG00000003384	-	98	75.179	Ornithorhynchus_anatinus
ENSRNOG00000002275	Fip1l1	99	58.919	ENSORLG00000004397	fip1l1b	83	58.079	Oryzias_latipes
ENSRNOG00000002275	Fip1l1	99	59.279	ENSORLG00020008716	fip1l1b	83	58.297	Oryzias_latipes_hni
ENSRNOG00000002275	Fip1l1	99	59.459	ENSORLG00015006736	fip1l1b	99	54.414	Oryzias_latipes_hsok
ENSRNOG00000002275	Fip1l1	99	45.955	ENSOMEG00000015730	fip1l1b	83	47.537	Oryzias_melastigma
ENSRNOG00000002275	Fip1l1	95	91.573	ENSOARG00000018767	-	100	90.824	Ovis_aries
ENSRNOG00000002275	Fip1l1	100	98.623	ENSPEMG00000002025	Fip1l1	100	98.623	Peromyscus_maniculatus_bairdii
ENSRNOG00000002275	Fip1l1	52	88.197	ENSPCIG00000019318	-	97	87.869	Phascolarctos_cinereus
ENSRNOG00000002275	Fip1l1	99	55.712	ENSPFOG00000014745	fip1l1b	83	58.333	Poecilia_formosa
ENSRNOG00000002275	Fip1l1	99	54.561	ENSPLAG00000010954	fip1l1b	69	59.898	Poecilia_latipinna
ENSRNOG00000002275	Fip1l1	99	55.888	ENSPMEG00000019187	fip1l1b	83	58.333	Poecilia_mexicana
ENSRNOG00000002275	Fip1l1	81	47.450	ENSPREG00000012535	fip1l1b	62	60.791	Poecilia_reticulata
ENSRNOG00000002275	Fip1l1	70	98.214	ENSPVAG00000000716	-	71	98.214	Pteropus_vampyrus
ENSRNOG00000002275	Fip1l1	58	51.862	ENSPNYG00000015976	fip1l1b	58	64.091	Pundamilia_nyererei
ENSRNOG00000002275	Fip1l1	59	43.260	ENSPNAG00000009853	fip1l1a	53	52.128	Pygocentrus_nattereri
ENSRNOG00000002275	Fip1l1	59	55.030	ENSPNAG00000015341	fip1l1b	69	58.147	Pygocentrus_nattereri
ENSRNOG00000002275	Fip1l1	95	85.814	ENSSHAG00000015789	-	98	83.713	Sarcophilus_harrisii
ENSRNOG00000002275	Fip1l1	99	56.964	ENSSMAG00000013444	fip1l1b	83	63.100	Scophthalmus_maximus
ENSRNOG00000002275	Fip1l1	99	57.451	ENSSDUG00000004117	fip1l1b	83	59.259	Seriola_dumerili
ENSRNOG00000002275	Fip1l1	99	57.734	ENSSLDG00000024099	fip1l1b	83	63.755	Seriola_lalandi_dorsalis
ENSRNOG00000002275	Fip1l1	88	92.784	ENSSARG00000001973	-	89	92.784	Sorex_araneus
ENSRNOG00000002275	Fip1l1	52	73.571	ENSSPUG00000017328	-	92	73.929	Sphenodon_punctatus
ENSRNOG00000002275	Fip1l1	99	55.838	ENSSPAG00000017564	fip1l1b	84	57.895	Stegastes_partitus
ENSRNOG00000002275	Fip1l1	90	82.645	ENSTGUG00000007834	-	97	83.471	Taeniopygia_guttata
ENSRNOG00000002275	Fip1l1	99	53.607	ENSTNIG00000004104	fip1l1b	83	50.000	Tetraodon_nigroviridis
ENSRNOG00000002275	Fip1l1	67	90.857	ENSTBEG00000007839	-	79	88.571	Tupaia_belangeri
ENSRNOG00000002275	Fip1l1	91	93.573	ENSUMAG00000002758	-	99	93.182	Ursus_maritimus
ENSRNOG00000002275	Fip1l1	85	96.569	ENSVPAG00000011574	-	90	96.569	Vicugna_pacos
ENSRNOG00000002275	Fip1l1	92	70.722	ENSXETG00000011679	fip1l1	81	73.810	Xenopus_tropicalis
ENSRNOG00000002275	Fip1l1	99	57.754	ENSXMAG00000017620	fip1l1b	83	58.672	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	IEA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	-	IEA	Process