EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002319 (Gene tree)
Gene ID: 60381
Gene Symbol: Tsn
Alias: -
Full Name: translin
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 15194 bases
Position: chr13:34238717-34253910
Accession: 621107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000063499	Translin	PF01997.16	8.6e-57	1	1
ENSRNOP00000042839	Translin	PF01997.16	2.8e-51	1	1
ENSRNOP00000075985	Translin	PF01997.16	2.9e-51	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068524	-	3053	XM_008769496	ENSRNOP00000063499	228 (aa)	XP_008767718	Q71SY3
ENSRNOT00000092847	-	879	-	ENSRNOP00000075985	282 (aa)	-	A0A1B0GWQ7
ENSRNOT00000044095	-	865	-	ENSRNOP00000042839	278 (aa)	-	E9PT79

Gene Model

Click here to download ENSRNOG00000002319's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002319's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002319	Tsn	100	99.123	ENSG00000211460	TSN	100	99.123	Homo_sapiens
ENSRNOG00000002319	Tsn	100	78.509	ENSAPOG00000002063	tsn	100	78.509	Acanthochromis_polyacanthus
ENSRNOG00000002319	Tsn	100	98.684	ENSAMEG00000005055	TSN	100	98.684	Ailuropoda_melanoleuca
ENSRNOG00000002319	Tsn	100	79.386	ENSACIG00000021694	tsn	100	79.386	Amphilophus_citrinellus
ENSRNOG00000002319	Tsn	100	78.509	ENSAOCG00000015574	tsn	100	80.097	Amphiprion_ocellaris
ENSRNOG00000002319	Tsn	100	78.509	ENSAPEG00000001677	tsn	100	78.509	Amphiprion_percula
ENSRNOG00000002319	Tsn	99	77.333	ENSATEG00000004115	tsn	99	77.333	Anabas_testudineus
ENSRNOG00000002319	Tsn	60	30.519	ENSAPLG00000013433	-	53	30.519	Anas_platyrhynchos
ENSRNOG00000002319	Tsn	94	84.932	ENSACAG00000004757	TSN	99	84.932	Anolis_carolinensis
ENSRNOG00000002319	Tsn	100	99.561	ENSANAG00000026842	TSN	100	99.561	Aotus_nancymaae
ENSRNOG00000002319	Tsn	100	79.386	ENSACLG00000020831	tsn	100	79.386	Astatotilapia_calliptera
ENSRNOG00000002319	Tsn	100	78.070	ENSAMXG00000035417	tsn	100	78.070	Astyanax_mexicanus
ENSRNOG00000002319	Tsn	100	98.684	ENSBTAG00000006059	TSN	100	98.684	Bos_taurus
ENSRNOG00000002319	Tsn	50	89.381	ENSCJAG00000008511	-	88	89.381	Callithrix_jacchus
ENSRNOG00000002319	Tsn	100	99.123	ENSCJAG00000044533	-	100	99.123	Callithrix_jacchus
ENSRNOG00000002319	Tsn	100	99.561	ENSCJAG00000047222	-	100	99.561	Callithrix_jacchus
ENSRNOG00000002319	Tsn	99	98.678	ENSCAFG00000004700	TSN	94	98.678	Canis_familiaris
ENSRNOG00000002319	Tsn	100	98.684	ENSCAFG00020011747	TSN	100	98.684	Canis_lupus_dingo
ENSRNOG00000002319	Tsn	100	98.684	ENSCHIG00000010715	TSN	100	98.684	Capra_hircus
ENSRNOG00000002319	Tsn	100	98.246	ENSTSYG00000004395	TSN	100	98.246	Carlito_syrichta
ENSRNOG00000002319	Tsn	90	80.097	ENSCAPG00000015595	TSN	81	80.097	Cavia_aperea
ENSRNOG00000002319	Tsn	100	99.123	ENSCPOG00000035645	TSN	100	99.123	Cavia_porcellus
ENSRNOG00000002319	Tsn	66	84.868	ENSCCAG00000034886	-	84	84.868	Cebus_capucinus
ENSRNOG00000002319	Tsn	100	99.123	ENSCCAG00000026371	TSN	100	99.123	Cebus_capucinus
ENSRNOG00000002319	Tsn	100	99.123	ENSCATG00000032155	TSN	100	99.123	Cercocebus_atys
ENSRNOG00000002319	Tsn	100	99.123	ENSCLAG00000006171	TSN	100	99.123	Chinchilla_lanigera
ENSRNOG00000002319	Tsn	100	99.123	ENSCSAG00000016712	TSN	100	99.123	Chlorocebus_sabaeus
ENSRNOG00000002319	Tsn	66	87.417	ENSCPBG00000013741	-	80	87.417	Chrysemys_picta_bellii
ENSRNOG00000002319	Tsn	97	76.126	ENSCPBG00000018116	-	97	76.126	Chrysemys_picta_bellii
ENSRNOG00000002319	Tsn	95	45.161	ENSCING00000012612	-	99	45.161	Ciona_intestinalis
ENSRNOG00000002319	Tsn	97	43.498	ENSCSAVG00000009485	-	99	43.498	Ciona_savignyi
ENSRNOG00000002319	Tsn	100	99.123	ENSCANG00000041881	TSN	100	99.123	Colobus_angolensis_palliatus
ENSRNOG00000002319	Tsn	100	100.000	ENSCGRG00001018233	Tsn	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000002319	Tsn	100	100.000	ENSCGRG00000008331	Tsn	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000002319	Tsn	100	75.877	ENSCSEG00000005825	tsn	100	75.877	Cynoglossus_semilaevis
ENSRNOG00000002319	Tsn	98	70.536	ENSCVAG00000022024	tsn	99	70.982	Cyprinodon_variegatus
ENSRNOG00000002319	Tsn	98	79.911	ENSDARG00000041830	tsn	99	79.911	Danio_rerio
ENSRNOG00000002319	Tsn	100	98.246	ENSDNOG00000025740	TSN	100	98.246	Dasypus_novemcinctus
ENSRNOG00000002319	Tsn	100	99.123	ENSDORG00000026251	-	100	99.123	Dipodomys_ordii
ENSRNOG00000002319	Tsn	95	52.778	FBgn0033528	trsn	91	52.778	Drosophila_melanogaster
ENSRNOG00000002319	Tsn	100	98.684	ENSEASG00005004774	TSN	100	98.684	Equus_asinus_asinus
ENSRNOG00000002319	Tsn	100	98.684	ENSECAG00000015930	TSN	100	98.684	Equus_caballus
ENSRNOG00000002319	Tsn	76	98.276	ENSEEUG00000013935	TSN	100	98.276	Erinaceus_europaeus
ENSRNOG00000002319	Tsn	100	79.386	ENSELUG00000007669	tsn	100	79.386	Esox_lucius
ENSRNOG00000002319	Tsn	100	98.684	ENSFCAG00000027149	TSN	100	98.684	Felis_catus
ENSRNOG00000002319	Tsn	75	74.118	ENSFCAG00000022306	-	96	74.118	Felis_catus
ENSRNOG00000002319	Tsn	91	86.124	ENSFALG00000013247	TSN	96	83.258	Ficedula_albicollis
ENSRNOG00000002319	Tsn	100	99.123	ENSFDAG00000012302	TSN	100	99.123	Fukomys_damarensis
ENSRNOG00000002319	Tsn	100	78.070	ENSFHEG00000015531	tsn	100	78.070	Fundulus_heteroclitus
ENSRNOG00000002319	Tsn	98	77.679	ENSGMOG00000009247	tsn	99	77.679	Gadus_morhua
ENSRNOG00000002319	Tsn	100	86.463	ENSGALG00000011652	TSN	100	86.463	Gallus_gallus
ENSRNOG00000002319	Tsn	100	78.070	ENSGAFG00000003816	tsn	100	78.070	Gambusia_affinis
ENSRNOG00000002319	Tsn	97	78.378	ENSGACG00000000235	tsn	97	78.378	Gasterosteus_aculeatus
ENSRNOG00000002319	Tsn	100	99.123	ENSGGOG00000002216	TSN	100	99.123	Gorilla_gorilla
ENSRNOG00000002319	Tsn	100	78.509	ENSHBUG00000002340	tsn	85	78.509	Haplochromis_burtoni
ENSRNOG00000002319	Tsn	100	99.123	ENSHGLG00000007038	TSN	100	99.123	Heterocephalus_glaber_female
ENSRNOG00000002319	Tsn	100	99.123	ENSHGLG00100000069	TSN	100	99.123	Heterocephalus_glaber_male
ENSRNOG00000002319	Tsn	98	78.027	ENSHCOG00000001756	tsn	99	78.027	Hippocampus_comes
ENSRNOG00000002319	Tsn	100	78.509	ENSIPUG00000021370	tsn	100	78.509	Ictalurus_punctatus
ENSRNOG00000002319	Tsn	100	99.123	ENSSTOG00000000972	TSN	100	99.123	Ictidomys_tridecemlineatus
ENSRNOG00000002319	Tsn	100	99.123	ENSJJAG00000006730	Tsn	100	99.123	Jaculus_jaculus
ENSRNOG00000002319	Tsn	100	78.509	ENSKMAG00000004996	tsn	100	78.509	Kryptolebias_marmoratus
ENSRNOG00000002319	Tsn	98	78.125	ENSLBEG00000012620	tsn	99	78.125	Labrus_bergylta
ENSRNOG00000002319	Tsn	98	59.031	ENSLACG00000005246	TSN	99	59.031	Latimeria_chalumnae
ENSRNOG00000002319	Tsn	98	79.464	ENSLOCG00000002191	tsn	97	79.464	Lepisosteus_oculatus
ENSRNOG00000002319	Tsn	100	91.342	ENSLAFG00000032428	TSN	100	91.342	Loxodonta_africana
ENSRNOG00000002319	Tsn	100	99.123	ENSMFAG00000044217	TSN	100	99.123	Macaca_fascicularis
ENSRNOG00000002319	Tsn	100	99.123	ENSMMUG00000021119	TSN	100	99.123	Macaca_mulatta
ENSRNOG00000002319	Tsn	100	99.123	ENSMNEG00000040632	TSN	100	99.123	Macaca_nemestrina
ENSRNOG00000002319	Tsn	54	99.194	ENSMLEG00000038656	TSN	96	99.194	Mandrillus_leucophaeus
ENSRNOG00000002319	Tsn	100	78.070	ENSMAMG00000019536	tsn	100	78.070	Mastacembelus_armatus
ENSRNOG00000002319	Tsn	100	79.386	ENSMZEG00005018715	tsn	85	79.386	Maylandia_zebra
ENSRNOG00000002319	Tsn	76	86.207	ENSMGAG00000011956	TSN	89	86.207	Meleagris_gallopavo
ENSRNOG00000002319	Tsn	92	98.095	ENSMAUG00000018800	Tsn	100	99.515	Mesocricetus_auratus
ENSRNOG00000002319	Tsn	100	99.123	ENSMICG00000015793	TSN	100	99.123	Microcebus_murinus
ENSRNOG00000002319	Tsn	100	99.123	ENSMOCG00000013248	Tsn	100	99.123	Microtus_ochrogaster
ENSRNOG00000002319	Tsn	90	77.670	ENSMMOG00000019661	tsn	100	77.670	Mola_mola
ENSRNOG00000002319	Tsn	100	93.013	ENSMODG00000000147	TSN	100	93.013	Monodelphis_domestica
ENSRNOG00000002319	Tsn	100	78.070	ENSMALG00000001827	tsn	100	78.070	Monopterus_albus
ENSRNOG00000002319	Tsn	100	99.561	ENSMUSG00000026374	Tsn	100	99.561	Mus_musculus
ENSRNOG00000002319	Tsn	100	99.561	MGP_PahariEiJ_G0027742	Tsn	100	99.561	Mus_pahari
ENSRNOG00000002319	Tsn	100	99.561	MGP_SPRETEiJ_G0015313	Tsn	100	99.561	Mus_spretus
ENSRNOG00000002319	Tsn	100	98.684	ENSMPUG00000001056	TSN	100	98.684	Mustela_putorius_furo
ENSRNOG00000002319	Tsn	54	31.206	ENSMLUG00000028551	-	83	31.206	Myotis_lucifugus
ENSRNOG00000002319	Tsn	90	98.058	ENSMLUG00000012656	TSN	100	98.058	Myotis_lucifugus
ENSRNOG00000002319	Tsn	100	99.561	ENSNGAG00000010353	Tsn	100	99.561	Nannospalax_galili
ENSRNOG00000002319	Tsn	100	78.947	ENSNBRG00000001193	tsn	100	78.947	Neolamprologus_brichardi
ENSRNOG00000002319	Tsn	100	99.123	ENSNLEG00000032773	TSN	100	99.123	Nomascus_leucogenys
ENSRNOG00000002319	Tsn	100	72.807	ENSMEUG00000006228	TSN	100	72.807	Notamacropus_eugenii
ENSRNOG00000002319	Tsn	61	78.417	ENSOPRG00000004858	-	99	78.417	Ochotona_princeps
ENSRNOG00000002319	Tsn	100	99.123	ENSODEG00000008386	-	100	99.123	Octodon_degus
ENSRNOG00000002319	Tsn	100	79.825	ENSODEG00000005998	-	100	79.825	Octodon_degus
ENSRNOG00000002319	Tsn	100	78.947	ENSONIG00000017060	tsn	100	78.947	Oreochromis_niloticus
ENSRNOG00000002319	Tsn	91	93.237	ENSOANG00000003457	TSN	100	93.237	Ornithorhynchus_anatinus
ENSRNOG00000002319	Tsn	100	98.684	ENSOCUG00000023529	TSN	100	98.684	Oryctolagus_cuniculus
ENSRNOG00000002319	Tsn	100	78.509	ENSORLG00000010049	tsn	100	78.509	Oryzias_latipes
ENSRNOG00000002319	Tsn	98	78.571	ENSORLG00020016476	tsn	99	78.571	Oryzias_latipes_hni
ENSRNOG00000002319	Tsn	63	74.306	ENSORLG00020017000	-	84	74.306	Oryzias_latipes_hni
ENSRNOG00000002319	Tsn	100	78.070	ENSORLG00015019192	tsn	100	78.070	Oryzias_latipes_hsok
ENSRNOG00000002319	Tsn	100	78.509	ENSOMEG00000016335	tsn	100	78.509	Oryzias_melastigma
ENSRNOG00000002319	Tsn	100	99.123	ENSOGAG00000030436	TSN	100	99.123	Otolemur_garnettii
ENSRNOG00000002319	Tsn	100	98.684	ENSOARG00000013339	TSN	100	98.684	Ovis_aries
ENSRNOG00000002319	Tsn	100	99.123	ENSPPAG00000032878	TSN	100	99.123	Pan_paniscus
ENSRNOG00000002319	Tsn	96	65.455	ENSPPRG00000004174	-	94	65.455	Panthera_pardus
ENSRNOG00000002319	Tsn	100	98.684	ENSPPRG00000006531	TSN	99	98.684	Panthera_pardus
ENSRNOG00000002319	Tsn	55	93.651	ENSPTIG00000012953	TSN	88	90.840	Panthera_tigris_altaica
ENSRNOG00000002319	Tsn	100	99.123	ENSPTRG00000012420	TSN	100	99.123	Pan_troglodytes
ENSRNOG00000002319	Tsn	100	99.123	ENSPANG00000000733	TSN	100	99.123	Papio_anubis
ENSRNOG00000002319	Tsn	98	78.125	ENSPKIG00000002005	tsn	99	78.125	Paramormyrops_kingsleyae
ENSRNOG00000002319	Tsn	77	89.143	ENSPSIG00000006064	TSN	96	89.143	Pelodiscus_sinensis
ENSRNOG00000002319	Tsn	96	79.545	ENSPMGG00000015287	tsn	97	79.545	Periophthalmus_magnuspinnatus
ENSRNOG00000002319	Tsn	97	66.968	ENSPMAG00000009161	tsn	95	66.968	Petromyzon_marinus
ENSRNOG00000002319	Tsn	91	95.652	ENSPCIG00000023491	TSN	100	95.631	Phascolarctos_cinereus
ENSRNOG00000002319	Tsn	100	78.509	ENSPFOG00000016063	tsn	100	78.509	Poecilia_formosa
ENSRNOG00000002319	Tsn	100	78.509	ENSPLAG00000010654	tsn	100	78.509	Poecilia_latipinna
ENSRNOG00000002319	Tsn	100	78.070	ENSPMEG00000023570	tsn	100	78.070	Poecilia_mexicana
ENSRNOG00000002319	Tsn	100	78.070	ENSPREG00000003481	tsn	100	78.070	Poecilia_reticulata
ENSRNOG00000002319	Tsn	100	99.123	ENSPPYG00000012774	TSN	100	99.123	Pongo_abelii
ENSRNOG00000002319	Tsn	76	97.126	ENSPCAG00000003549	TSN	100	97.126	Procavia_capensis
ENSRNOG00000002319	Tsn	100	99.123	ENSPCOG00000011045	TSN	100	99.123	Propithecus_coquereli
ENSRNOG00000002319	Tsn	100	98.684	ENSPVAG00000016702	TSN	100	98.684	Pteropus_vampyrus
ENSRNOG00000002319	Tsn	100	79.386	ENSPNYG00000012396	tsn	85	79.386	Pundamilia_nyererei
ENSRNOG00000002319	Tsn	100	78.070	ENSPNAG00000018140	tsn	100	78.070	Pygocentrus_nattereri
ENSRNOG00000002319	Tsn	100	99.123	ENSRBIG00000041316	TSN	100	99.123	Rhinopithecus_bieti
ENSRNOG00000002319	Tsn	100	99.123	ENSRROG00000029954	TSN	100	99.123	Rhinopithecus_roxellana
ENSRNOG00000002319	Tsn	82	80.749	ENSSBOG00000015719	-	83	94.040	Saimiri_boliviensis_boliviensis
ENSRNOG00000002319	Tsn	100	99.561	ENSSBOG00000028579	TSN	100	99.561	Saimiri_boliviensis_boliviensis
ENSRNOG00000002319	Tsn	100	95.614	ENSSHAG00000011707	TSN	100	95.614	Sarcophilus_harrisii
ENSRNOG00000002319	Tsn	98	78.027	ENSSFOG00015020668	tsn	98	78.027	Scleropages_formosus
ENSRNOG00000002319	Tsn	100	77.632	ENSSMAG00000005822	tsn	100	77.632	Scophthalmus_maximus
ENSRNOG00000002319	Tsn	100	78.070	ENSSDUG00000011388	tsn	100	78.070	Seriola_dumerili
ENSRNOG00000002319	Tsn	100	78.070	ENSSLDG00000008206	tsn	100	78.070	Seriola_lalandi_dorsalis
ENSRNOG00000002319	Tsn	100	67.105	ENSSARG00000007193	-	100	67.105	Sorex_araneus
ENSRNOG00000002319	Tsn	100	85.526	ENSSPUG00000017518	TSN	100	85.526	Sphenodon_punctatus
ENSRNOG00000002319	Tsn	100	78.509	ENSSPAG00000009283	tsn	100	78.509	Stegastes_partitus
ENSRNOG00000002319	Tsn	100	97.807	ENSSSCG00000015729	TSN	100	97.807	Sus_scrofa
ENSRNOG00000002319	Tsn	100	84.279	ENSTGUG00000004445	TSN	100	84.279	Taeniopygia_guttata
ENSRNOG00000002319	Tsn	97	77.376	ENSTRUG00000013691	tsn	98	77.376	Takifugu_rubripes
ENSRNOG00000002319	Tsn	97	76.923	ENSTNIG00000015707	tsn	97	76.923	Tetraodon_nigroviridis
ENSRNOG00000002319	Tsn	100	98.246	ENSTBEG00000015319	TSN	100	98.246	Tupaia_belangeri
ENSRNOG00000002319	Tsn	100	98.684	ENSTTRG00000005854	TSN	100	98.684	Tursiops_truncatus
ENSRNOG00000002319	Tsn	100	98.684	ENSUAMG00000021618	TSN	100	98.684	Ursus_americanus
ENSRNOG00000002319	Tsn	100	97.368	ENSUMAG00000008516	TSN	100	97.368	Ursus_maritimus
ENSRNOG00000002319	Tsn	57	72.093	ENSVPAG00000009874	-	100	72.093	Vicugna_pacos
ENSRNOG00000002319	Tsn	91	98.068	ENSVVUG00000027555	TSN	99	98.544	Vulpes_vulpes
ENSRNOG00000002319	Tsn	100	76.316	ENSXETG00000000838	tsn	100	76.316	Xenopus_tropicalis
ENSRNOG00000002319	Tsn	54	74.194	ENSXCOG00000018514	tsn	95	74.194	Xiphophorus_couchianus
ENSRNOG00000002319	Tsn	100	78.509	ENSXMAG00000022538	tsn	100	78.509	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	9681436.	IDA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	9681436.	IDA	Function
GO:0044877	protein-containing complex binding	9681436.	IDA	Function
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process