EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002408 (Gene tree)
Gene ID: 305340
Gene Symbol: Rbm47
Alias: LOC305340|MGC94215|RGD1359713
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 27544 bases
Position: chr14:43810119-43837662
Accession: 1359713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000003327	RRM_1	PF00076.22	3.8e-37	1	3
ENSRNOP00000003327	RRM_1	PF00076.22	3.8e-37	2	3
ENSRNOP00000003327	RRM_1	PF00076.22	3.8e-37	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000003327	-	2344	XM_006250949	ENSRNOP00000003327	590 (aa)	XP_006251011	Q66H68

Gene Model

Click here to download ENSRNOG00000002408's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002408's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000002408	Rbm47	52	54.516	ENSRNOG00000000204	Syncrip	80	45.952
ENSRNOG00000002408	Rbm47	54	73.101	ENSRNOG00000025823	Rbm46	59	73.101
ENSRNOG00000002408	Rbm47	52	55.484	ENSRNOG00000011910	Hnrnpr	71	45.374
ENSRNOG00000002408	Rbm47	77	57.082	ENSRNOG00000033195	A1cf	75	57.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002408	Rbm47	100	93.613	ENSG00000163694	RBM47	100	95.392	Homo_sapiens
ENSRNOG00000002408	Rbm47	100	77.462	ENSAPOG00000011062	rbm47	100	79.695	Acanthochromis_polyacanthus
ENSRNOG00000002408	Rbm47	100	93.445	ENSAMEG00000009672	RBM47	100	93.782	Ailuropoda_melanoleuca
ENSRNOG00000002408	Rbm47	100	76.500	ENSACIG00000011531	rbm47	100	75.500	Amphilophus_citrinellus
ENSRNOG00000002408	Rbm47	100	77.500	ENSAOCG00000022245	rbm47	100	79.695	Amphiprion_ocellaris
ENSRNOG00000002408	Rbm47	100	77.295	ENSAPEG00000018304	rbm47	100	79.695	Amphiprion_percula
ENSRNOG00000002408	Rbm47	100	77.124	ENSATEG00000018400	rbm47	100	75.163	Anabas_testudineus
ENSRNOG00000002408	Rbm47	100	86.824	ENSAPLG00000013974	RBM47	100	86.655	Anas_platyrhynchos
ENSRNOG00000002408	Rbm47	100	85.167	ENSACAG00000011833	RBM47	100	85.000	Anolis_carolinensis
ENSRNOG00000002408	Rbm47	100	93.950	ENSANAG00000029440	RBM47	100	93.613	Aotus_nancymaae
ENSRNOG00000002408	Rbm47	100	75.941	ENSACLG00000016902	rbm47	100	80.256	Astatotilapia_calliptera
ENSRNOG00000002408	Rbm47	100	74.754	ENSAMXG00000021794	rbm47	100	74.262	Astyanax_mexicanus
ENSRNOG00000002408	Rbm47	100	94.772	ENSBTAG00000002356	RBM47	100	94.435	Bos_taurus
ENSRNOG00000002408	Rbm47	100	93.624	ENSCJAG00000019385	RBM47	100	93.289	Callithrix_jacchus
ENSRNOG00000002408	Rbm47	96	92.807	ENSCAFG00000015898	RBM47	100	91.414	Canis_familiaris
ENSRNOG00000002408	Rbm47	83	93.699	ENSCAFG00020010558	RBM47	94	94.203	Canis_lupus_dingo
ENSRNOG00000002408	Rbm47	100	94.772	ENSCHIG00000026214	RBM47	100	94.266	Capra_hircus
ENSRNOG00000002408	Rbm47	90	82.520	ENSTSYG00000033612	RBM47	93	87.611	Carlito_syrichta
ENSRNOG00000002408	Rbm47	100	86.364	ENSCAPG00000008426	RBM47	100	86.577	Cavia_aperea
ENSRNOG00000002408	Rbm47	100	92.593	ENSCPOG00000014100	RBM47	100	94.180	Cavia_porcellus
ENSRNOG00000002408	Rbm47	100	93.624	ENSCCAG00000030129	-	100	93.289	Cebus_capucinus
ENSRNOG00000002408	Rbm47	99	65.476	ENSCCAG00000024397	-	99	64.796	Cebus_capucinus
ENSRNOG00000002408	Rbm47	100	93.782	ENSCATG00000042064	RBM47	100	93.782	Cercocebus_atys
ENSRNOG00000002408	Rbm47	100	91.919	ENSCLAG00000001684	RBM47	100	93.386	Chinchilla_lanigera
ENSRNOG00000002408	Rbm47	100	93.782	ENSCSAG00000017060	RBM47	100	93.782	Chlorocebus_sabaeus
ENSRNOG00000002408	Rbm47	88	88.608	ENSCHOG00000011731	RBM47	88	88.090	Choloepus_hoffmanni
ENSRNOG00000002408	Rbm47	100	88.462	ENSCPBG00000013831	RBM47	100	88.462	Chrysemys_picta_bellii
ENSRNOG00000002408	Rbm47	100	94.286	ENSCANG00000019997	RBM47	100	93.782	Colobus_angolensis_palliatus
ENSRNOG00000002408	Rbm47	100	72.542	ENSCGRG00001020102	-	100	72.542	Cricetulus_griseus_chok1gshd
ENSRNOG00000002408	Rbm47	100	97.133	ENSCGRG00001000623	-	100	97.133	Cricetulus_griseus_chok1gshd
ENSRNOG00000002408	Rbm47	100	96.290	ENSCGRG00000007762	-	100	98.101	Cricetulus_griseus_crigri
ENSRNOG00000002408	Rbm47	100	67.164	ENSCGRG00000014760	-	100	71.864	Cricetulus_griseus_crigri
ENSRNOG00000002408	Rbm47	100	74.667	ENSCSEG00000004545	rbm47	100	73.500	Cynoglossus_semilaevis
ENSRNOG00000002408	Rbm47	100	75.042	ENSCVAG00000020144	rbm47	100	79.188	Cyprinodon_variegatus
ENSRNOG00000002408	Rbm47	100	76.151	ENSDARG00000061985	rbm47	100	75.329	Danio_rerio
ENSRNOG00000002408	Rbm47	100	92.399	ENSDNOG00000046854	RBM47	100	92.736	Dasypus_novemcinctus
ENSRNOG00000002408	Rbm47	100	92.462	ENSDORG00000010144	Rbm47	100	92.295	Dipodomys_ordii
ENSRNOG00000002408	Rbm47	100	92.617	ENSETEG00000009194	RBM47	100	92.617	Echinops_telfairi
ENSRNOG00000002408	Rbm47	95	59.483	ENSEBUG00000011912	rbm47	95	60.243	Eptatretus_burgeri
ENSRNOG00000002408	Rbm47	100	93.761	ENSEASG00005008443	RBM47	100	93.761	Equus_asinus_asinus
ENSRNOG00000002408	Rbm47	100	93.761	ENSECAG00000004400	RBM47	100	93.761	Equus_caballus
ENSRNOG00000002408	Rbm47	75	92.208	ENSEEUG00000001194	RBM47	75	93.074	Erinaceus_europaeus
ENSRNOG00000002408	Rbm47	100	73.096	ENSELUG00000006148	rbm47	100	79.849	Esox_lucius
ENSRNOG00000002408	Rbm47	100	94.266	ENSFCAG00000012399	RBM47	100	93.929	Felis_catus
ENSRNOG00000002408	Rbm47	100	89.076	ENSFALG00000002861	RBM47	100	88.908	Ficedula_albicollis
ENSRNOG00000002408	Rbm47	100	91.077	ENSFDAG00000016326	RBM47	100	90.572	Fukomys_damarensis
ENSRNOG00000002408	Rbm47	100	76.589	ENSFHEG00000007938	rbm47	100	74.415	Fundulus_heteroclitus
ENSRNOG00000002408	Rbm47	100	73.659	ENSGMOG00000014802	rbm47	100	72.520	Gadus_morhua
ENSRNOG00000002408	Rbm47	64	90.426	ENSGALG00000014267	RBM47	99	90.426	Gallus_gallus
ENSRNOG00000002408	Rbm47	64	82.713	ENSGAFG00000020571	rbm47	98	81.383	Gambusia_affinis
ENSRNOG00000002408	Rbm47	100	73.290	ENSGACG00000016223	rbm47	100	77.665	Gasterosteus_aculeatus
ENSRNOG00000002408	Rbm47	100	88.629	ENSGAGG00000020051	RBM47	100	88.629	Gopherus_agassizii
ENSRNOG00000002408	Rbm47	100	93.782	ENSGGOG00000001367	RBM47	100	93.782	Gorilla_gorilla
ENSRNOG00000002408	Rbm47	100	75.856	ENSHBUG00000003520	rbm47	100	80.256	Haplochromis_burtoni
ENSRNOG00000002408	Rbm47	84	85.484	ENSHGLG00000016914	RBM47	100	93.038	Heterocephalus_glaber_female
ENSRNOG00000002408	Rbm47	100	92.230	ENSHGLG00100014028	-	100	93.038	Heterocephalus_glaber_male
ENSRNOG00000002408	Rbm47	100	83.080	ENSHGLG00100003071	-	100	83.249	Heterocephalus_glaber_male
ENSRNOG00000002408	Rbm47	99	76.254	ENSHCOG00000002074	rbm47	99	79.442	Hippocampus_comes
ENSRNOG00000002408	Rbm47	100	77.387	ENSIPUG00000004743	rbm47	100	76.047	Ictalurus_punctatus
ENSRNOG00000002408	Rbm47	100	93.960	ENSSTOG00000004727	RBM47	100	93.960	Ictidomys_tridecemlineatus
ENSRNOG00000002408	Rbm47	100	92.773	ENSJJAG00000013823	Rbm47	100	93.277	Jaculus_jaculus
ENSRNOG00000002408	Rbm47	100	77.333	ENSKMAG00000000084	rbm47	100	78.934	Kryptolebias_marmoratus
ENSRNOG00000002408	Rbm47	100	76.080	ENSLBEG00000008436	rbm47	100	78.061	Labrus_bergylta
ENSRNOG00000002408	Rbm47	100	83.920	ENSLACG00000007196	RBM47	100	83.250	Latimeria_chalumnae
ENSRNOG00000002408	Rbm47	100	80.905	ENSLOCG00000012966	rbm47	95	79.397	Lepisosteus_oculatus
ENSRNOG00000002408	Rbm47	100	93.277	ENSLAFG00000011998	RBM47	100	92.605	Loxodonta_africana
ENSRNOG00000002408	Rbm47	100	93.782	ENSMFAG00000037967	RBM47	100	93.782	Macaca_fascicularis
ENSRNOG00000002408	Rbm47	100	93.782	ENSMMUG00000012036	RBM47	100	94.819	Macaca_mulatta
ENSRNOG00000002408	Rbm47	100	93.613	ENSMNEG00000040774	RBM47	100	93.782	Macaca_nemestrina
ENSRNOG00000002408	Rbm47	100	95.873	ENSMLEG00000041432	RBM47	100	95.873	Mandrillus_leucophaeus
ENSRNOG00000002408	Rbm47	100	76.105	ENSMAMG00000019143	rbm47	100	80.307	Mastacembelus_armatus
ENSRNOG00000002408	Rbm47	100	75.941	ENSMZEG00005023659	rbm47	100	74.959	Maylandia_zebra
ENSRNOG00000002408	Rbm47	100	88.462	ENSMGAG00000012226	RBM47	100	87.960	Meleagris_gallopavo
ENSRNOG00000002408	Rbm47	100	98.480	ENSMAUG00000006493	Rbm47	100	99.367	Mesocricetus_auratus
ENSRNOG00000002408	Rbm47	100	86.509	ENSMICG00000026417	RBM47	100	87.352	Microcebus_murinus
ENSRNOG00000002408	Rbm47	100	98.308	ENSMOCG00000021170	Rbm47	100	98.308	Microtus_ochrogaster
ENSRNOG00000002408	Rbm47	100	76.471	ENSMMOG00000007260	rbm47	100	74.837	Mola_mola
ENSRNOG00000002408	Rbm47	100	90.556	ENSMODG00000007003	RBM47	100	90.051	Monodelphis_domestica
ENSRNOG00000002408	Rbm47	100	80.270	ENSMODG00000020561	-	100	80.101	Monodelphis_domestica
ENSRNOG00000002408	Rbm47	52	81.672	ENSMODG00000015426	-	98	77.848	Monodelphis_domestica
ENSRNOG00000002408	Rbm47	100	76.628	ENSMALG00000005167	rbm47	100	80.256	Monopterus_albus
ENSRNOG00000002408	Rbm47	100	98.983	MGP_CAROLIEiJ_G0027258	Rbm47	100	98.983	Mus_caroli
ENSRNOG00000002408	Rbm47	100	98.983	ENSMUSG00000070780	Rbm47	100	98.983	Mus_musculus
ENSRNOG00000002408	Rbm47	100	99.153	MGP_PahariEiJ_G0017040	Rbm47	100	99.153	Mus_pahari
ENSRNOG00000002408	Rbm47	100	98.475	MGP_SPRETEiJ_G0028253	Rbm47	100	98.475	Mus_spretus
ENSRNOG00000002408	Rbm47	100	94.764	ENSMPUG00000006177	RBM47	94	94.764	Mustela_putorius_furo
ENSRNOG00000002408	Rbm47	100	91.062	ENSMLUG00000000889	RBM47	100	91.400	Myotis_lucifugus
ENSRNOG00000002408	Rbm47	100	93.423	ENSNGAG00000003325	Rbm47	100	93.423	Nannospalax_galili
ENSRNOG00000002408	Rbm47	100	76.307	ENSNBRG00000015092	rbm47	100	75.327	Neolamprologus_brichardi
ENSRNOG00000002408	Rbm47	100	93.445	ENSNLEG00000017151	RBM47	100	93.445	Nomascus_leucogenys
ENSRNOG00000002408	Rbm47	73	86.449	ENSMEUG00000009516	-	99	86.449	Notamacropus_eugenii
ENSRNOG00000002408	Rbm47	75	94.215	ENSOPRG00000016507	-	75	94.215	Ochotona_princeps
ENSRNOG00000002408	Rbm47	100	92.256	ENSODEG00000004873	RBM47	100	92.593	Octodon_degus
ENSRNOG00000002408	Rbm47	100	75.407	ENSONIG00000009061	rbm47	100	73.779	Oreochromis_niloticus
ENSRNOG00000002408	Rbm47	100	86.311	ENSOANG00000008978	RBM47	100	86.811	Ornithorhynchus_anatinus
ENSRNOG00000002408	Rbm47	100	93.603	ENSOCUG00000012034	RBM47	100	93.098	Oryctolagus_cuniculus
ENSRNOG00000002408	Rbm47	100	76.127	ENSORLG00000005847	rbm47	100	79.028	Oryzias_latipes
ENSRNOG00000002408	Rbm47	100	76.294	ENSORLG00020005154	rbm47	100	79.028	Oryzias_latipes_hni
ENSRNOG00000002408	Rbm47	100	76.254	ENSORLG00015000066	rbm47	100	79.028	Oryzias_latipes_hsok
ENSRNOG00000002408	Rbm47	100	77.425	ENSOMEG00000010730	rbm47	100	75.418	Oryzias_melastigma
ENSRNOG00000002408	Rbm47	100	94.932	ENSOGAG00000029367	-	100	94.932	Otolemur_garnettii
ENSRNOG00000002408	Rbm47	100	86.464	ENSOGAG00000025193	-	100	86.464	Otolemur_garnettii
ENSRNOG00000002408	Rbm47	100	86.464	ENSOARG00000012711	RBM47	100	86.294	Ovis_aries
ENSRNOG00000002408	Rbm47	100	93.613	ENSPPAG00000029763	RBM47	100	93.613	Pan_paniscus
ENSRNOG00000002408	Rbm47	100	90.894	ENSPPRG00000012873	RBM47	100	94.415	Panthera_pardus
ENSRNOG00000002408	Rbm47	85	91.434	ENSPTIG00000017046	RBM47	100	91.434	Panthera_tigris_altaica
ENSRNOG00000002408	Rbm47	100	93.782	ENSPTRG00000016006	RBM47	100	93.782	Pan_troglodytes
ENSRNOG00000002408	Rbm47	100	93.782	ENSPANG00000005980	RBM47	100	93.782	Papio_anubis
ENSRNOG00000002408	Rbm47	85	86.197	ENSPKIG00000013431	RBM47	98	79.949	Paramormyrops_kingsleyae
ENSRNOG00000002408	Rbm47	96	76.870	ENSPKIG00000005037	rbm47	100	73.267	Paramormyrops_kingsleyae
ENSRNOG00000002408	Rbm47	90	89.623	ENSPSIG00000017516	RBM47	97	89.623	Pelodiscus_sinensis
ENSRNOG00000002408	Rbm47	100	75.418	ENSPMGG00000018540	rbm47	100	74.415	Periophthalmus_magnuspinnatus
ENSRNOG00000002408	Rbm47	100	98.480	ENSPEMG00000011088	Rbm47	100	98.480	Peromyscus_maniculatus_bairdii
ENSRNOG00000002408	Rbm47	98	78.840	ENSPFOG00000007997	rbm47	100	74.309	Poecilia_formosa
ENSRNOG00000002408	Rbm47	96	79.203	ENSPLAG00000002072	rbm47	100	80.688	Poecilia_latipinna
ENSRNOG00000002408	Rbm47	100	77.963	ENSPMEG00000017492	rbm47	100	78.481	Poecilia_mexicana
ENSRNOG00000002408	Rbm47	98	78.803	ENSPREG00000008456	rbm47	100	80.952	Poecilia_reticulata
ENSRNOG00000002408	Rbm47	98	80.912	ENSPPYG00000014688	RBM47	100	80.574	Pongo_abelii
ENSRNOG00000002408	Rbm47	81	94.763	ENSPCAG00000011879	RBM47	81	95.012	Procavia_capensis
ENSRNOG00000002408	Rbm47	100	90.694	ENSPCOG00000023451	RBM47	100	91.096	Propithecus_coquereli
ENSRNOG00000002408	Rbm47	100	92.761	ENSPVAG00000003812	RBM47	100	93.098	Pteropus_vampyrus
ENSRNOG00000002408	Rbm47	100	75.570	ENSPNYG00000022868	rbm47	100	74.756	Pundamilia_nyererei
ENSRNOG00000002408	Rbm47	100	75.777	ENSPNAG00000007940	rbm47	100	75.123	Pygocentrus_nattereri
ENSRNOG00000002408	Rbm47	100	94.286	ENSRBIG00000039601	RBM47	100	93.782	Rhinopithecus_bieti
ENSRNOG00000002408	Rbm47	100	94.286	ENSRROG00000044696	RBM47	100	93.782	Rhinopithecus_roxellana
ENSRNOG00000002408	Rbm47	100	90.051	ENSSBOG00000028475	RBM47	100	94.845	Saimiri_boliviensis_boliviensis
ENSRNOG00000002408	Rbm47	100	90.556	ENSSHAG00000017576	RBM47	100	90.388	Sarcophilus_harrisii
ENSRNOG00000002408	Rbm47	100	72.848	ENSSFOG00015012445	rbm47	100	71.642	Scleropages_formosus
ENSRNOG00000002408	Rbm47	100	73.456	ENSSFOG00015024101	RBM47	100	72.287	Scleropages_formosus
ENSRNOG00000002408	Rbm47	100	74.837	ENSSMAG00000009744	rbm47	100	78.462	Scophthalmus_maximus
ENSRNOG00000002408	Rbm47	100	77.759	ENSSDUG00000022684	rbm47	100	75.920	Seriola_dumerili
ENSRNOG00000002408	Rbm47	100	78.261	ENSSLDG00000003109	rbm47	100	78.392	Seriola_lalandi_dorsalis
ENSRNOG00000002408	Rbm47	84	93.080	ENSSARG00000001735	RBM47	75	93.527	Sorex_araneus
ENSRNOG00000002408	Rbm47	100	85.930	ENSSPUG00000007515	RBM47	100	88.360	Sphenodon_punctatus
ENSRNOG00000002408	Rbm47	100	78.167	ENSSPAG00000001257	rbm47	100	80.203	Stegastes_partitus
ENSRNOG00000002408	Rbm47	100	94.604	ENSSSCG00000008796	RBM47	100	93.929	Sus_scrofa
ENSRNOG00000002408	Rbm47	100	88.571	ENSTGUG00000008705	RBM47	100	88.235	Taeniopygia_guttata
ENSRNOG00000002408	Rbm47	100	75.920	ENSTRUG00000014050	rbm47	100	74.247	Takifugu_rubripes
ENSRNOG00000002408	Rbm47	100	75.123	ENSTNIG00000006127	rbm47	100	74.304	Tetraodon_nigroviridis
ENSRNOG00000002408	Rbm47	77	93.421	ENSTBEG00000001607	RBM47	76	93.421	Tupaia_belangeri
ENSRNOG00000002408	Rbm47	100	93.739	ENSTTRG00000002839	RBM47	100	94.247	Tursiops_truncatus
ENSRNOG00000002408	Rbm47	100	94.257	ENSUAMG00000021346	RBM47	100	94.426	Ursus_americanus
ENSRNOG00000002408	Rbm47	56	93.684	ENSVPAG00000000641	-	57	93.151	Vicugna_pacos
ENSRNOG00000002408	Rbm47	96	94.035	ENSVVUG00000014774	RBM47	100	91.751	Vulpes_vulpes
ENSRNOG00000002408	Rbm47	100	84.317	ENSXETG00000012802	rbm47	100	84.317	Xenopus_tropicalis
ENSRNOG00000002408	Rbm47	89	82.275	ENSXCOG00000000780	rbm47	100	80.952	Xiphophorus_couchianus
ENSRNOG00000002408	Rbm47	100	76.461	ENSXMAG00000009874	rbm47	100	78.426	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002244	hematopoietic progenitor cell differentiation	-	IEA	Process
GO:0002244	hematopoietic progenitor cell differentiation	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0016554	cytidine to uridine editing	-	IEA	Process
GO:0016554	cytidine to uridine editing	-	ISO	Process