EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSRNOG00000002429 (Gene tree)
Gene ID: -
Gene Symbol: Rtl3
Alias: LOC317221|RGD1564805|Zcchc5
Full Name: retrotransposon Gag like 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 1869 bases
Position: chrX:77954484-77956352
Accession: 1564805
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000003296	zf-CCHC	PF00098.23	0.00028	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000003296	-	1671	XM_006257179	ENSRNOP00000003296	556 (aa)	XP_006257241	D3ZH95

Gene Model

Click here to download ENSRNOG00000002429's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002429's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002429	Rtl3	99	45.745	ENSG00000179300	RTL3	99	50.089	Homo_sapiens
ENSRNOG00000002429	Rtl3	97	57.933	ENSTSYG00000008776	RTL3	100	57.933	Carlito_syrichta
ENSRNOG00000002429	Rtl3	100	75.806	ENSCGRG00001015952	Rtl3	100	75.806	Cricetulus_griseus_chok1gshd
ENSRNOG00000002429	Rtl3	100	56.637	ENSDORG00000029995	Rtl3	100	55.929	Dipodomys_ordii
ENSRNOG00000002429	Rtl3	100	51.494	ENSECAG00000029496	RTL3	100	51.318	Equus_caballus
ENSRNOG00000002429	Rtl3	100	56.283	ENSSTOG00000027152	RTL3	100	56.283	Ictidomys_tridecemlineatus
ENSRNOG00000002429	Rtl3	100	52.289	ENSJJAG00000014790	-	100	51.408	Jaculus_jaculus
ENSRNOG00000002429	Rtl3	100	74.731	ENSMAUG00000011823	Rtl3	100	74.731	Mesocricetus_auratus
ENSRNOG00000002429	Rtl3	100	53.805	ENSMICG00000004901	RTL3	100	53.915	Microcebus_murinus
ENSRNOG00000002429	Rtl3	100	74.153	ENSMOCG00000017247	Rtl3	100	74.153	Microtus_ochrogaster
ENSRNOG00000002429	Rtl3	100	86.871	MGP_CAROLIEiJ_G0033333	Rtl3	100	86.871	Mus_caroli
ENSRNOG00000002429	Rtl3	100	88.309	ENSMUSG00000047686	Rtl3	100	88.309	Mus_musculus
ENSRNOG00000002429	Rtl3	100	87.950	MGP_PahariEiJ_G0031869	Rtl3	100	87.950	Mus_pahari
ENSRNOG00000002429	Rtl3	100	88.129	MGP_SPRETEiJ_G0034497	Rtl3	100	88.129	Mus_spretus
ENSRNOG00000002429	Rtl3	100	63.830	ENSNGAG00000002851	Rtl3	100	63.298	Nannospalax_galili
ENSRNOG00000002429	Rtl3	100	57.043	ENSOCUG00000025689	RTL3	100	57.043	Oryctolagus_cuniculus
ENSRNOG00000002429	Rtl3	100	51.504	ENSPCOG00000016711	RTL3	100	55.595	Propithecus_coquereli
ENSRNOG00000002429	Rtl3	100	47.452	ENSTBEG00000002464	RTL3	100	47.276	Tupaia_belangeri