EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002827 (Gene tree)
Gene ID: 302920
Gene Symbol: Rbfox1
Alias: A2bp1|Boll|LOC302920
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 341932 bases
Position: chr10:8312961-8654892
Accession: 1311210
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000059781	Fox-1_C	PF12414.8	1.4e-42	1	1
ENSRNOP00000070788	Fox-1_C	PF12414.8	5.9e-38	1	1
ENSRNOP00000070788	RRM_1	PF00076.22	2.4e-18	1	1
ENSRNOP00000059781	RRM_1	PF00076.22	3.5e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000066534	-	4153	XM_006245774	ENSRNOP00000059781	416 (aa)	XP_006245836	D3ZSL1
ENSRNOT00000082332	-	1930	-	ENSRNOP00000070788	376 (aa)	-	A0A0G2JYU0

Gene Model

Click here to download ENSRNOG00000002827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002827's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000002827	Rbfox1	77	67.378	ENSRNOG00000003386	Rbfox3	100	69.388
ENSRNOG00000002827	Rbfox1	94	62.990	ENSRNOG00000004688	Rbfox2	93	60.644

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002827	Rbfox1	100	95.215	ENSG00000078328	RBFOX1	100	97.264	Homo_sapiens
ENSRNOG00000002827	Rbfox1	97	73.697	ENSAPOG00000003197	rbfox1	99	75.243	Acanthochromis_polyacanthus
ENSRNOG00000002827	Rbfox1	59	94.595	ENSAMEG00000008605	RBFOX1	100	93.200	Ailuropoda_melanoleuca
ENSRNOG00000002827	Rbfox1	55	74.519	ENSACIG00000005478	rbfox1	68	64.189	Amphilophus_citrinellus
ENSRNOG00000002827	Rbfox1	79	69.401	ENSAOCG00000008283	rbfox1	99	69.085	Amphiprion_ocellaris
ENSRNOG00000002827	Rbfox1	90	70.635	ENSAPEG00000010636	rbfox1	100	70.526	Amphiprion_percula
ENSRNOG00000002827	Rbfox1	79	68.025	ENSATEG00000007513	rbfox1	99	67.712	Anabas_testudineus
ENSRNOG00000002827	Rbfox1	94	93.606	ENSAPLG00000013263	RBFOX1	98	93.606	Anas_platyrhynchos
ENSRNOG00000002827	Rbfox1	93	87.755	ENSACAG00000004013	RBFOX1	98	87.755	Anolis_carolinensis
ENSRNOG00000002827	Rbfox1	100	91.948	ENSANAG00000029527	RBFOX1	98	95.153	Aotus_nancymaae
ENSRNOG00000002827	Rbfox1	60	87.500	ENSAMXG00000002431	rbfox1	65	87.500	Astyanax_mexicanus
ENSRNOG00000002827	Rbfox1	100	96.286	ENSBTAG00000007210	RBFOX1	100	96.286	Bos_taurus
ENSRNOG00000002827	Rbfox1	100	96.643	ENSCJAG00000017351	RBFOX1	100	96.643	Callithrix_jacchus
ENSRNOG00000002827	Rbfox1	100	95.215	ENSCAFG00000019082	RBFOX1	100	95.215	Canis_familiaris
ENSRNOG00000002827	Rbfox1	97	83.379	ENSCAFG00020024881	RBFOX1	83	96.284	Canis_lupus_dingo
ENSRNOG00000002827	Rbfox1	100	96.286	ENSCHIG00000023549	RBFOX1	100	96.286	Capra_hircus
ENSRNOG00000002827	Rbfox1	97	95.082	ENSTSYG00000005334	RBFOX1	100	95.373	Carlito_syrichta
ENSRNOG00000002827	Rbfox1	100	94.737	ENSCAPG00000017669	RBFOX1	100	97.165	Cavia_aperea
ENSRNOG00000002827	Rbfox1	100	94.737	ENSCPOG00000011314	RBFOX1	99	96.667	Cavia_porcellus
ENSRNOG00000002827	Rbfox1	100	94.737	ENSCCAG00000023031	RBFOX1	100	94.737	Cebus_capucinus
ENSRNOG00000002827	Rbfox1	100	95.215	ENSCATG00000033816	RBFOX1	100	95.215	Cercocebus_atys
ENSRNOG00000002827	Rbfox1	100	94.976	ENSCLAG00000012761	RBFOX1	100	94.976	Chinchilla_lanigera
ENSRNOG00000002827	Rbfox1	100	94.960	ENSCSAG00000008739	RBFOX1	100	94.960	Chlorocebus_sabaeus
ENSRNOG00000002827	Rbfox1	100	73.206	ENSCHOG00000012843	RBFOX1	100	73.206	Choloepus_hoffmanni
ENSRNOG00000002827	Rbfox1	100	90.186	ENSCPBG00000026626	RBFOX1	100	90.186	Chrysemys_picta_bellii
ENSRNOG00000002827	Rbfox1	100	95.215	ENSCANG00000033125	RBFOX1	100	95.215	Colobus_angolensis_palliatus
ENSRNOG00000002827	Rbfox1	100	97.122	ENSCGRG00001013729	Rbfox1	100	97.122	Cricetulus_griseus_chok1gshd
ENSRNOG00000002827	Rbfox1	100	97.122	ENSCGRG00000003272	Rbfox1	100	97.122	Cricetulus_griseus_crigri
ENSRNOG00000002827	Rbfox1	90	71.033	ENSCSEG00000008840	rbfox1	100	71.033	Cynoglossus_semilaevis
ENSRNOG00000002827	Rbfox1	94	80.357	ENSDARG00000014746	rbfox1	100	85.366	Danio_rerio
ENSRNOG00000002827	Rbfox1	99	93.447	ENSDNOG00000043612	RBFOX1	99	93.447	Dasypus_novemcinctus
ENSRNOG00000002827	Rbfox1	94	95.153	ENSDORG00000010024	Rbfox1	97	95.141	Dipodomys_ordii
ENSRNOG00000002827	Rbfox1	100	76.259	ENSETEG00000003771	RBFOX1	100	76.259	Echinops_telfairi
ENSRNOG00000002827	Rbfox1	97	97.820	ENSEASG00005011599	RBFOX1	98	95.663	Equus_asinus_asinus
ENSRNOG00000002827	Rbfox1	97	97.548	ENSECAG00000012667	RBFOX1	100	94.430	Equus_caballus
ENSRNOG00000002827	Rbfox1	81	65.975	ENSELUG00000013096	rbfox1	100	51.741	Esox_lucius
ENSRNOG00000002827	Rbfox1	98	97.561	ENSFCAG00000025322	RBFOX1	100	94.695	Felis_catus
ENSRNOG00000002827	Rbfox1	86	91.049	ENSFALG00000004027	RBFOX1	97	93.498	Ficedula_albicollis
ENSRNOG00000002827	Rbfox1	100	95.215	ENSFDAG00000007388	RBFOX1	100	95.215	Fukomys_damarensis
ENSRNOG00000002827	Rbfox1	100	89.952	ENSGALG00000034325	RBFOX1	100	89.952	Gallus_gallus
ENSRNOG00000002827	Rbfox1	100	91.512	ENSGAGG00000023681	RBFOX1	100	93.899	Gopherus_agassizii
ENSRNOG00000002827	Rbfox1	100	95.215	ENSGGOG00000016871	-	100	95.215	Gorilla_gorilla
ENSRNOG00000002827	Rbfox1	100	94.976	ENSHGLG00000016944	RBFOX1	100	94.976	Heterocephalus_glaber_female
ENSRNOG00000002827	Rbfox1	100	94.976	ENSHGLG00100003272	RBFOX1	100	94.976	Heterocephalus_glaber_male
ENSRNOG00000002827	Rbfox1	85	68.485	ENSHCOG00000016419	rbfox1	91	70.605	Hippocampus_comes
ENSRNOG00000002827	Rbfox1	100	77.660	ENSIPUG00000015215	rbfox1	100	82.979	Ictalurus_punctatus
ENSRNOG00000002827	Rbfox1	100	93.780	ENSSTOG00000000322	RBFOX1	98	96.410	Ictidomys_tridecemlineatus
ENSRNOG00000002827	Rbfox1	100	92.326	ENSJJAG00000002575	Rbfox1	100	92.326	Jaculus_jaculus
ENSRNOG00000002827	Rbfox1	94	72.111	ENSLBEG00000014659	rbfox1	98	72.040	Labrus_bergylta
ENSRNOG00000002827	Rbfox1	94	85.787	ENSLOCG00000006675	rbfox1	99	85.787	Lepisosteus_oculatus
ENSRNOG00000002827	Rbfox1	74	98.377	ENSLAFG00000011480	RBFOX1	100	98.377	Loxodonta_africana
ENSRNOG00000002827	Rbfox1	100	94.976	ENSMFAG00000036447	RBFOX1	100	94.976	Macaca_fascicularis
ENSRNOG00000002827	Rbfox1	100	94.976	ENSMMUG00000003458	RBFOX1	100	94.976	Macaca_mulatta
ENSRNOG00000002827	Rbfox1	100	94.976	ENSMNEG00000032034	RBFOX1	100	94.976	Macaca_nemestrina
ENSRNOG00000002827	Rbfox1	100	95.215	ENSMLEG00000015382	RBFOX1	100	95.215	Mandrillus_leucophaeus
ENSRNOG00000002827	Rbfox1	90	74.235	ENSMAMG00000003142	rbfox1	100	74.745	Mastacembelus_armatus
ENSRNOG00000002827	Rbfox1	77	86.942	ENSMGAG00000008606	RBFOX1	98	86.713	Meleagris_gallopavo
ENSRNOG00000002827	Rbfox1	92	59.008	ENSMAUG00000020570	Rbfox1	96	57.963	Mesocricetus_auratus
ENSRNOG00000002827	Rbfox1	100	96.552	ENSMICG00000034286	RBFOX1	100	96.552	Microcebus_murinus
ENSRNOG00000002827	Rbfox1	100	97.122	ENSMOCG00000020932	Rbfox1	100	99.478	Microtus_ochrogaster
ENSRNOG00000002827	Rbfox1	85	68.634	ENSMMOG00000009716	rbfox1	86	70.501	Mola_mola
ENSRNOG00000002827	Rbfox1	94	94.085	ENSMODG00000005826	RBFOX1	100	94.085	Monodelphis_domestica
ENSRNOG00000002827	Rbfox1	97	74.279	ENSMALG00000003337	rbfox1	98	75.373	Monopterus_albus
ENSRNOG00000002827	Rbfox1	100	97.606	MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.362	Mus_caroli
ENSRNOG00000002827	Rbfox1	100	97.122	ENSMUSG00000008658	Rbfox1	100	97.122	Mus_musculus
ENSRNOG00000002827	Rbfox1	100	97.362	MGP_PahariEiJ_G0016135	Rbfox1	100	97.362	Mus_pahari
ENSRNOG00000002827	Rbfox1	100	97.074	MGP_SPRETEiJ_G0021321	Rbfox1	100	96.882	Mus_spretus
ENSRNOG00000002827	Rbfox1	97	95.368	ENSMPUG00000014822	RBFOX1	93	95.368	Mustela_putorius_furo
ENSRNOG00000002827	Rbfox1	74	99.023	ENSMLUG00000015896	RBFOX1	100	99.023	Myotis_lucifugus
ENSRNOG00000002827	Rbfox1	100	95.933	ENSNGAG00000023276	Rbfox1	100	98.196	Nannospalax_galili
ENSRNOG00000002827	Rbfox1	94	60.577	ENSNBRG00000011084	rbfox1	94	60.577	Neolamprologus_brichardi
ENSRNOG00000002827	Rbfox1	100	94.976	ENSNLEG00000010017	-	100	94.976	Nomascus_leucogenys
ENSRNOG00000002827	Rbfox1	100	77.512	ENSMEUG00000012525	RBFOX1	100	77.512	Notamacropus_eugenii
ENSRNOG00000002827	Rbfox1	100	76.794	ENSOPRG00000006199	-	100	75.598	Ochotona_princeps
ENSRNOG00000002827	Rbfox1	100	94.258	ENSODEG00000013166	RBFOX1	98	96.401	Octodon_degus
ENSRNOG00000002827	Rbfox1	100	92.042	ENSOANG00000002379	RBFOX1	100	92.042	Ornithorhynchus_anatinus
ENSRNOG00000002827	Rbfox1	59	93.274	ENSOCUG00000001205	-	99	93.274	Oryctolagus_cuniculus
ENSRNOG00000002827	Rbfox1	94	97.436	ENSOGAG00000025535	RBFOX1	98	97.436	Otolemur_garnettii
ENSRNOG00000002827	Rbfox1	65	84.774	ENSOARG00000005135	RBFOX1	100	83.200	Ovis_aries
ENSRNOG00000002827	Rbfox1	97	98.087	ENSPPAG00000036238	-	100	98.196	Pan_paniscus
ENSRNOG00000002827	Rbfox1	100	94.976	ENSPPRG00000006546	RBFOX1	100	94.976	Panthera_pardus
ENSRNOG00000002827	Rbfox1	93	86.598	ENSPTIG00000021154	RBFOX1	99	85.604	Panthera_tigris_altaica
ENSRNOG00000002827	Rbfox1	100	95.215	ENSPTRG00000007744	RBFOX1	100	95.215	Pan_troglodytes
ENSRNOG00000002827	Rbfox1	100	95.215	ENSPANG00000026500	RBFOX1	100	95.215	Papio_anubis
ENSRNOG00000002827	Rbfox1	80	82.060	ENSPKIG00000019353	rbfox1	88	82.060	Paramormyrops_kingsleyae
ENSRNOG00000002827	Rbfox1	98	78.495	ENSPKIG00000009667	-	99	79.032	Paramormyrops_kingsleyae
ENSRNOG00000002827	Rbfox1	94	93.350	ENSPSIG00000006523	RBFOX1	98	93.350	Pelodiscus_sinensis
ENSRNOG00000002827	Rbfox1	100	97.362	ENSPEMG00000017607	Rbfox1	100	97.362	Peromyscus_maniculatus_bairdii
ENSRNOG00000002827	Rbfox1	70	92.069	ENSPCIG00000026887	RBFOX1	100	92.069	Phascolarctos_cinereus
ENSRNOG00000002827	Rbfox1	97	95.913	ENSPPYG00000007079	-	93	95.913	Pongo_abelii
ENSRNOG00000002827	Rbfox1	90	86.772	ENSPCAG00000002630	RBFOX1	100	86.772	Procavia_capensis
ENSRNOG00000002827	Rbfox1	100	94.976	ENSPCOG00000025687	RBFOX1	100	94.976	Propithecus_coquereli
ENSRNOG00000002827	Rbfox1	100	90.670	ENSPVAG00000013467	RBFOX1	100	90.670	Pteropus_vampyrus
ENSRNOG00000002827	Rbfox1	90	81.061	ENSPNAG00000023109	rbfox1	100	81.061	Pygocentrus_nattereri
ENSRNOG00000002827	Rbfox1	100	97.082	ENSRBIG00000044478	RBFOX1	100	98.196	Rhinopithecus_bieti
ENSRNOG00000002827	Rbfox1	100	95.215	ENSRROG00000044411	RBFOX1	100	95.215	Rhinopithecus_roxellana
ENSRNOG00000002827	Rbfox1	97	97.820	ENSSBOG00000033726	RBFOX1	98	97.187	Saimiri_boliviensis_boliviensis
ENSRNOG00000002827	Rbfox1	93	93.299	ENSSHAG00000009257	RBFOX1	98	92.821	Sarcophilus_harrisii
ENSRNOG00000002827	Rbfox1	94	67.595	ENSSFOG00015023675	rbfox1	98	67.342	Scleropages_formosus
ENSRNOG00000002827	Rbfox1	88	68.194	ENSSFOG00015009955	-	87	67.733	Scleropages_formosus
ENSRNOG00000002827	Rbfox1	97	74.822	ENSSMAG00000015505	rbfox1	96	74.408	Scophthalmus_maximus
ENSRNOG00000002827	Rbfox1	94	73.418	ENSSDUG00000016413	rbfox1	99	73.469	Seriola_dumerili
ENSRNOG00000002827	Rbfox1	85	69.040	ENSSLDG00000009353	rbfox1	95	70.517	Seriola_lalandi_dorsalis
ENSRNOG00000002827	Rbfox1	85	80.186	ENSSPUG00000009732	RBFOX1	87	82.353	Sphenodon_punctatus
ENSRNOG00000002827	Rbfox1	93	75.369	ENSSPAG00000009723	rbfox1	100	75.123	Stegastes_partitus
ENSRNOG00000002827	Rbfox1	97	97.275	ENSSSCG00000007917	RBFOX1	100	94.930	Sus_scrofa
ENSRNOG00000002827	Rbfox1	93	93.830	ENSTGUG00000004562	RBFOX1	100	93.830	Taeniopygia_guttata
ENSRNOG00000002827	Rbfox1	94	74.755	ENSTRUG00000020940	rbfox1	99	74.755	Takifugu_rubripes
ENSRNOG00000002827	Rbfox1	64	56.688	ENSTNIG00000002567	rbfox1	100	58.280	Tetraodon_nigroviridis
ENSRNOG00000002827	Rbfox1	81	79.310	ENSTBEG00000009169	-	81	79.310	Tupaia_belangeri
ENSRNOG00000002827	Rbfox1	100	94.498	ENSTTRG00000005700	RBFOX1	100	94.498	Tursiops_truncatus
ENSRNOG00000002827	Rbfox1	99	91.957	ENSUAMG00000024633	RBFOX1	97	93.734	Ursus_americanus
ENSRNOG00000002827	Rbfox1	97	83.379	ENSUMAG00000003579	RBFOX1	97	84.595	Ursus_maritimus
ENSRNOG00000002827	Rbfox1	81	96.104	ENSVPAG00000001284	RBFOX1	81	96.104	Vicugna_pacos
ENSRNOG00000002827	Rbfox1	100	94.695	ENSVVUG00000017311	RBFOX1	100	94.695	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISO	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007399	nervous system development	21873635.	IBA	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0050885	neuromuscular process controlling balance	-	IEA	Process
GO:0050885	neuromuscular process controlling balance	-	ISO	Process
GO:2001014	regulation of skeletal muscle cell differentiation	-	IEA	Process
GO:2001014	regulation of skeletal muscle cell differentiation	-	ISO	Process