EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002912 (Gene tree)
Gene ID: 360464
Gene Symbol: Parn
Alias: LOC360464|RGD1565449
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 152856 bases
Position: chr10:1308414-1461269
Accession: 1565449
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000072539	R3H	PF01424.22	1.7e-05	1	1
ENSRNOP00000073884	R3H	PF01424.22	1.7e-05	1	1
ENSRNOP00000072539	RNA_bind	PF08675.11	1.7e-33	1	1
ENSRNOP00000073884	RNA_bind	PF08675.11	1.7e-33	1	1
ENSRNOP00000072539	CAF1	PF04857.20	1.9e-88	1	1
ENSRNOP00000073884	CAF1	PF04857.20	1.9e-88	1	1
ENSRNOP00000070962	CAF1	PF04857.20	4.7e-26	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000084447	-	3366	-	ENSRNOP00000072539	642 (aa)	-	A0A0G2K6N8
ENSRNOT00000093463	-	639	-	-	- (aa)	-	-
ENSRNOT00000078421	-	2935	-	ENSRNOP00000073884	642 (aa)	-	A0A0G2K6N8
ENSRNOT00000093414	-	575	-	-	- (aa)	-	-
ENSRNOT00000083125	-	541	-	ENSRNOP00000070962	101 (aa)	-	A0A0G2JZ98

Gene Model

Click here to download ENSRNOG00000002912's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000002912	Parn	79	40.741	ENSRNOG00000023140	Pnldc1	89	30.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002912	Parn	98	88.889	ENSG00000140694	PARN	100	93.220	Homo_sapiens
ENSRNOG00000002912	Parn	96	66.327	ENSAPOG00000019730	-	100	64.706	Acanthochromis_polyacanthus
ENSRNOG00000002912	Parn	98	87.879	ENSAMEG00000011208	PARN	100	82.648	Ailuropoda_melanoleuca
ENSRNOG00000002912	Parn	86	71.327	ENSACIG00000000619	parn	86	71.327	Amphilophus_citrinellus
ENSRNOG00000002912	Parn	96	78.571	ENSAOCG00000003465	parn	78	76.217	Amphiprion_ocellaris
ENSRNOG00000002912	Parn	96	78.571	ENSAPEG00000010661	parn	95	73.535	Amphiprion_percula
ENSRNOG00000002912	Parn	96	78.571	ENSATEG00000004661	parn	83	73.565	Anabas_testudineus
ENSRNOG00000002912	Parn	98	84.848	ENSAPLG00000013914	PARN	99	78.495	Anas_platyrhynchos
ENSRNOG00000002912	Parn	98	79.798	ENSACAG00000004973	PARN	100	75.151	Anolis_carolinensis
ENSRNOG00000002912	Parn	98	88.889	ENSANAG00000031516	PARN	100	93.220	Aotus_nancymaae
ENSRNOG00000002912	Parn	96	79.592	ENSACLG00000004742	parn	84	73.702	Astatotilapia_calliptera
ENSRNOG00000002912	Parn	96	79.381	ENSAMXG00000012390	parn	87	74.200	Astyanax_mexicanus
ENSRNOG00000002912	Parn	98	87.879	ENSBTAG00000018097	PARN	100	82.353	Bos_taurus
ENSRNOG00000002912	Parn	98	87.879	ENSCJAG00000015866	PARN	100	93.220	Callithrix_jacchus
ENSRNOG00000002912	Parn	98	85.859	ENSCAFG00000018795	PARN	100	82.317	Canis_familiaris
ENSRNOG00000002912	Parn	82	39.286	ENSCAFG00020017742	PNLDC1	97	30.000	Canis_lupus_dingo
ENSRNOG00000002912	Parn	98	86.869	ENSCAFG00020024126	PARN	100	82.622	Canis_lupus_dingo
ENSRNOG00000002912	Parn	98	86.869	ENSCHIG00000018143	PARN	100	83.384	Capra_hircus
ENSRNOG00000002912	Parn	98	67.677	ENSCAPG00000007984	PARN	78	59.420	Cavia_aperea
ENSRNOG00000002912	Parn	97	87.755	ENSCPOG00000002263	PARN	100	81.887	Cavia_porcellus
ENSRNOG00000002912	Parn	98	88.889	ENSCCAG00000030367	PARN	100	93.220	Cebus_capucinus
ENSRNOG00000002912	Parn	98	88.889	ENSCATG00000041368	PARN	100	93.220	Cercocebus_atys
ENSRNOG00000002912	Parn	97	87.755	ENSCLAG00000015406	PARN	99	81.583	Chinchilla_lanigera
ENSRNOG00000002912	Parn	98	88.889	ENSCSAG00000008142	PARN	100	84.018	Chlorocebus_sabaeus
ENSRNOG00000002912	Parn	98	86.869	ENSCHOG00000007014	PARN	100	66.872	Choloepus_hoffmanni
ENSRNOG00000002912	Parn	98	84.848	ENSCPBG00000006609	PARN	93	82.205	Chrysemys_picta_bellii
ENSRNOG00000002912	Parn	88	45.161	ENSCING00000010142	-	99	43.715	Ciona_intestinalis
ENSRNOG00000002912	Parn	100	73.254	ENSCANG00000028849	-	100	93.220	Colobus_angolensis_palliatus
ENSRNOG00000002912	Parn	98	62.626	ENSCANG00000023734	-	100	74.091	Colobus_angolensis_palliatus
ENSRNOG00000002912	Parn	100	94.059	ENSCGRG00001012096	Parn	100	89.269	Cricetulus_griseus_chok1gshd
ENSRNOG00000002912	Parn	100	94.059	ENSCGRG00000004939	Parn	100	89.269	Cricetulus_griseus_crigri
ENSRNOG00000002912	Parn	96	77.551	ENSCSEG00000002064	parn	100	60.181	Cynoglossus_semilaevis
ENSRNOG00000002912	Parn	96	77.551	ENSCVAG00000014848	parn	100	64.296	Cyprinodon_variegatus
ENSRNOG00000002912	Parn	98	73.737	ENSDARG00000102634	parn	100	63.238	Danio_rerio
ENSRNOG00000002912	Parn	98	86.869	ENSDNOG00000000833	PARN	98	88.129	Dasypus_novemcinctus
ENSRNOG00000002912	Parn	97	75.510	ENSDORG00000027812	-	100	77.727	Dipodomys_ordii
ENSRNOG00000002912	Parn	98	86.869	ENSETEG00000014828	-	69	83.270	Echinops_telfairi
ENSRNOG00000002912	Parn	98	88.889	ENSEASG00005011400	PARN	100	84.299	Equus_asinus_asinus
ENSRNOG00000002912	Parn	98	88.889	ENSECAG00000017792	PARN	100	84.146	Equus_caballus
ENSRNOG00000002912	Parn	98	66.667	ENSEEUG00000010370	PARN	86	73.303	Erinaceus_europaeus
ENSRNOG00000002912	Parn	98	74.747	ENSELUG00000013139	parn	74	72.174	Esox_lucius
ENSRNOG00000002912	Parn	98	85.859	ENSFCAG00000044961	PARN	100	94.915	Felis_catus
ENSRNOG00000002912	Parn	98	82.828	ENSFALG00000003911	PARN	98	77.538	Ficedula_albicollis
ENSRNOG00000002912	Parn	97	88.776	ENSFDAG00000009234	PARN	100	81.555	Fukomys_damarensis
ENSRNOG00000002912	Parn	89	65.494	ENSFHEG00000013738	parn	92	74.576	Fundulus_heteroclitus
ENSRNOG00000002912	Parn	96	74.490	ENSGMOG00000003231	parn	99	74.033	Gadus_morhua
ENSRNOG00000002912	Parn	98	84.848	ENSGALG00000003091	PARN	100	77.439	Gallus_gallus
ENSRNOG00000002912	Parn	96	77.551	ENSGAFG00000011061	parn	100	63.610	Gambusia_affinis
ENSRNOG00000002912	Parn	96	77.551	ENSGACG00000019501	parn	100	66.462	Gasterosteus_aculeatus
ENSRNOG00000002912	Parn	98	87.879	ENSGGOG00000025224	PARN	96	93.220	Gorilla_gorilla
ENSRNOG00000002912	Parn	96	79.592	ENSHBUG00000017906	parn	92	73.609	Haplochromis_burtoni
ENSRNOG00000002912	Parn	97	89.796	ENSHGLG00000010886	PARN	100	81.860	Heterocephalus_glaber_female
ENSRNOG00000002912	Parn	97	89.796	ENSHGLG00100014659	PARN	100	81.860	Heterocephalus_glaber_male
ENSRNOG00000002912	Parn	96	79.592	ENSHCOG00000008683	parn	92	70.980	Hippocampus_comes
ENSRNOG00000002912	Parn	96	75.258	ENSIPUG00000012401	parn	84	61.996	Ictalurus_punctatus
ENSRNOG00000002912	Parn	97	90.816	ENSSTOG00000007519	PARN	100	83.079	Ictidomys_tridecemlineatus
ENSRNOG00000002912	Parn	97	90.816	ENSJJAG00000023049	Parn	100	83.821	Jaculus_jaculus
ENSRNOG00000002912	Parn	96	78.571	ENSKMAG00000009462	parn	84	72.279	Kryptolebias_marmoratus
ENSRNOG00000002912	Parn	96	81.633	ENSLBEG00000009167	parn	89	72.617	Labrus_bergylta
ENSRNOG00000002912	Parn	96	81.443	ENSLACG00000004207	PARN	100	75.236	Latimeria_chalumnae
ENSRNOG00000002912	Parn	96	82.474	ENSLOCG00000000715	parn	84	75.304	Lepisosteus_oculatus
ENSRNOG00000002912	Parn	98	87.879	ENSLAFG00000015036	PARN	100	83.359	Loxodonta_africana
ENSRNOG00000002912	Parn	79	40.741	ENSLAFG00000030189	PNLDC1	89	31.098	Loxodonta_africana
ENSRNOG00000002912	Parn	98	88.889	ENSMFAG00000044852	PARN	100	93.220	Macaca_fascicularis
ENSRNOG00000002912	Parn	98	88.889	ENSMMUG00000018849	PARN	100	93.220	Macaca_mulatta
ENSRNOG00000002912	Parn	80	38.889	ENSMMUG00000004181	PNLDC1	72	30.126	Macaca_mulatta
ENSRNOG00000002912	Parn	98	88.889	ENSMNEG00000045108	PARN	100	93.220	Macaca_nemestrina
ENSRNOG00000002912	Parn	98	88.889	ENSMLEG00000031743	PARN	100	93.220	Mandrillus_leucophaeus
ENSRNOG00000002912	Parn	96	76.531	ENSMAMG00000006939	parn	83	71.502	Mastacembelus_armatus
ENSRNOG00000002912	Parn	96	79.592	ENSMZEG00005013590	parn	95	71.979	Maylandia_zebra
ENSRNOG00000002912	Parn	98	84.848	ENSMGAG00000001004	PARN	98	75.851	Meleagris_gallopavo
ENSRNOG00000002912	Parn	100	96.040	ENSMAUG00000008025	Parn	100	83.410	Mesocricetus_auratus
ENSRNOG00000002912	Parn	76	37.975	ENSMAUG00000012298	Pnldc1	68	34.932	Mesocricetus_auratus
ENSRNOG00000002912	Parn	97	88.776	ENSMICG00000016053	PARN	100	94.915	Microcebus_murinus
ENSRNOG00000002912	Parn	100	94.059	ENSMOCG00000022211	Parn	100	94.867	Microtus_ochrogaster
ENSRNOG00000002912	Parn	96	78.571	ENSMMOG00000011333	parn	89	71.786	Mola_mola
ENSRNOG00000002912	Parn	98	85.859	ENSMODG00000004915	PARN	99	88.508	Monodelphis_domestica
ENSRNOG00000002912	Parn	96	78.571	ENSMALG00000019426	parn	93	75.000	Monopterus_albus
ENSRNOG00000002912	Parn	100	97.030	MGP_CAROLIEiJ_G0020466	Parn	100	92.212	Mus_caroli
ENSRNOG00000002912	Parn	79	40.741	ENSMUSG00000073460	Pnldc1	97	31.385	Mus_musculus
ENSRNOG00000002912	Parn	100	97.030	ENSMUSG00000022685	Parn	100	95.122	Mus_musculus
ENSRNOG00000002912	Parn	100	97.030	MGP_PahariEiJ_G0016172	Parn	100	92.056	Mus_pahari
ENSRNOG00000002912	Parn	100	97.030	MGP_SPRETEiJ_G0021361	Parn	100	92.368	Mus_spretus
ENSRNOG00000002912	Parn	98	87.879	ENSMPUG00000014464	PARN	100	83.079	Mustela_putorius_furo
ENSRNOG00000002912	Parn	98	86.869	ENSMLUG00000005414	PARN	100	88.664	Myotis_lucifugus
ENSRNOG00000002912	Parn	98	76.768	ENSNGAG00000024082	-	100	81.364	Nannospalax_galili
ENSRNOG00000002912	Parn	96	79.592	ENSNBRG00000006805	parn	93	73.285	Neolamprologus_brichardi
ENSRNOG00000002912	Parn	98	88.889	ENSNLEG00000010241	PARN	100	93.220	Nomascus_leucogenys
ENSRNOG00000002912	Parn	91	69.167	ENSMEUG00000008178	-	91	69.167	Notamacropus_eugenii
ENSRNOG00000002912	Parn	97	90.816	ENSOPRG00000012187	PARN	100	78.120	Ochotona_princeps
ENSRNOG00000002912	Parn	100	75.000	ENSODEG00000001617	PARN	100	75.000	Octodon_degus
ENSRNOG00000002912	Parn	96	79.592	ENSONIG00000000151	parn	100	67.273	Oreochromis_niloticus
ENSRNOG00000002912	Parn	98	82.828	ENSOANG00000029996	-	93	77.500	Ornithorhynchus_anatinus
ENSRNOG00000002912	Parn	61	77.778	ENSOANG00000020155	-	97	78.030	Ornithorhynchus_anatinus
ENSRNOG00000002912	Parn	97	88.776	ENSOCUG00000000322	PARN	100	82.083	Oryctolagus_cuniculus
ENSRNOG00000002912	Parn	96	65.306	ENSORLG00000024893	-	100	64.091	Oryzias_latipes
ENSRNOG00000002912	Parn	96	79.592	ENSORLG00020010313	parn	85	71.773	Oryzias_latipes_hni
ENSRNOG00000002912	Parn	96	79.592	ENSORLG00015000300	parn	85	71.256	Oryzias_latipes_hsok
ENSRNOG00000002912	Parn	96	78.571	ENSOMEG00000019555	parn	97	63.636	Oryzias_melastigma
ENSRNOG00000002912	Parn	94	88.421	ENSOGAG00000014626	PARN	100	88.391	Otolemur_garnettii
ENSRNOG00000002912	Parn	98	86.869	ENSOARG00000007574	PARN	100	90.688	Ovis_aries
ENSRNOG00000002912	Parn	98	87.879	ENSPPAG00000031438	PARN	100	93.220	Pan_paniscus
ENSRNOG00000002912	Parn	98	85.859	ENSPPRG00000018583	PARN	100	94.915	Panthera_pardus
ENSRNOG00000002912	Parn	98	85.859	ENSPTIG00000012135	PARN	100	94.915	Panthera_tigris_altaica
ENSRNOG00000002912	Parn	98	87.879	ENSPTRG00000007792	PARN	100	93.220	Pan_troglodytes
ENSRNOG00000002912	Parn	98	88.889	ENSPANG00000020099	PARN	100	93.220	Papio_anubis
ENSRNOG00000002912	Parn	94	82.105	ENSPKIG00000022807	parn	91	67.736	Paramormyrops_kingsleyae
ENSRNOG00000002912	Parn	80	41.975	ENSPSIG00000011419	PNLDC1	85	32.374	Pelodiscus_sinensis
ENSRNOG00000002912	Parn	98	82.828	ENSPSIG00000014804	PARN	100	76.975	Pelodiscus_sinensis
ENSRNOG00000002912	Parn	96	79.592	ENSPMGG00000014431	parn	80	69.603	Periophthalmus_magnuspinnatus
ENSRNOG00000002912	Parn	100	93.069	ENSPEMG00000018439	Parn	100	87.850	Peromyscus_maniculatus_bairdii
ENSRNOG00000002912	Parn	96	67.010	ENSPMAG00000003956	parn	99	65.067	Petromyzon_marinus
ENSRNOG00000002912	Parn	98	85.859	ENSPCIG00000001259	PARN	91	89.831	Phascolarctos_cinereus
ENSRNOG00000002912	Parn	96	77.551	ENSPFOG00000012823	parn	100	63.920	Poecilia_formosa
ENSRNOG00000002912	Parn	96	77.551	ENSPLAG00000006395	parn	83	72.978	Poecilia_latipinna
ENSRNOG00000002912	Parn	96	77.551	ENSPMEG00000007711	parn	100	64.062	Poecilia_mexicana
ENSRNOG00000002912	Parn	96	77.551	ENSPREG00000000147	parn	100	63.778	Poecilia_reticulata
ENSRNOG00000002912	Parn	98	88.889	ENSPPYG00000007123	PARN	100	83.308	Pongo_abelii
ENSRNOG00000002912	Parn	98	86.869	ENSPCAG00000001741	PARN	100	73.034	Procavia_capensis
ENSRNOG00000002912	Parn	97	87.755	ENSPCOG00000019292	PARN	100	94.915	Propithecus_coquereli
ENSRNOG00000002912	Parn	98	86.869	ENSPVAG00000002547	PARN	100	79.661	Pteropus_vampyrus
ENSRNOG00000002912	Parn	96	79.592	ENSPNYG00000006835	parn	95	69.056	Pundamilia_nyererei
ENSRNOG00000002912	Parn	96	79.381	ENSPNAG00000018905	parn	84	72.973	Pygocentrus_nattereri
ENSRNOG00000002912	Parn	53	80.627	ENSRBIG00000018726	PARN	100	80.912	Rhinopithecus_bieti
ENSRNOG00000002912	Parn	53	80.627	ENSRROG00000011162	-	100	80.912	Rhinopithecus_roxellana
ENSRNOG00000002912	Parn	98	88.889	ENSSBOG00000034726	PARN	100	93.220	Saimiri_boliviensis_boliviensis
ENSRNOG00000002912	Parn	98	85.859	ENSSHAG00000008493	PARN	94	86.842	Sarcophilus_harrisii
ENSRNOG00000002912	Parn	94	83.158	ENSSFOG00015014165	parn	94	72.617	Scleropages_formosus
ENSRNOG00000002912	Parn	96	74.490	ENSSMAG00000000685	parn	100	60.152	Scophthalmus_maximus
ENSRNOG00000002912	Parn	96	78.571	ENSSDUG00000014555	parn	83	73.030	Seriola_dumerili
ENSRNOG00000002912	Parn	96	57.143	ENSSLDG00000007603	-	100	60.000	Seriola_lalandi_dorsalis
ENSRNOG00000002912	Parn	98	89.899	ENSSARG00000014339	PARN	89	90.092	Sorex_araneus
ENSRNOG00000002912	Parn	98	82.828	ENSSPUG00000007719	PARN	100	78.049	Sphenodon_punctatus
ENSRNOG00000002912	Parn	96	78.571	ENSSPAG00000007095	parn	92	69.258	Stegastes_partitus
ENSRNOG00000002912	Parn	98	88.889	ENSSSCG00000007878	PARN	89	82.927	Sus_scrofa
ENSRNOG00000002912	Parn	82	42.169	ENSTGUG00000011418	PNLDC1	69	31.356	Taeniopygia_guttata
ENSRNOG00000002912	Parn	98	82.828	ENSTGUG00000004971	PARN	99	77.266	Taeniopygia_guttata
ENSRNOG00000002912	Parn	96	76.531	ENSTNIG00000008252	parn	93	70.470	Tetraodon_nigroviridis
ENSRNOG00000002912	Parn	97	73.469	ENSTBEG00000010407	PARN	100	71.357	Tupaia_belangeri
ENSRNOG00000002912	Parn	98	86.869	ENSTTRG00000002843	PARN	100	78.274	Tursiops_truncatus
ENSRNOG00000002912	Parn	98	86.869	ENSUAMG00000008283	PARN	90	77.523	Ursus_americanus
ENSRNOG00000002912	Parn	98	86.869	ENSUMAG00000004527	PARN	100	82.927	Ursus_maritimus
ENSRNOG00000002912	Parn	98	87.879	ENSVPAG00000008968	PARN	97	81.987	Vicugna_pacos
ENSRNOG00000002912	Parn	98	85.859	ENSVVUG00000019509	PARN	100	82.470	Vulpes_vulpes
ENSRNOG00000002912	Parn	98	73.737	ENSXETG00000010994	parn	100	79.658	Xenopus_tropicalis
ENSRNOG00000002912	Parn	96	77.551	ENSXCOG00000015990	parn	96	68.685	Xiphophorus_couchianus
ENSRNOG00000002912	Parn	96	76.531	ENSXMAG00000014783	parn	100	63.128	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0000495	box H/ACA snoRNA 3'-end processing	-	IEA	Process
GO:0000495	box H/ACA snoRNA 3'-end processing	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0010587	miRNA catabolic process	-	IEA	Process
GO:0010587	miRNA catabolic process	-	ISO	Process
GO:0019901	protein kinase binding	-	IEA	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0032212	positive regulation of telomere maintenance via telomerase	-	IEA	Process
GO:0032212	positive regulation of telomere maintenance via telomerase	-	ISO	Process
GO:0043169	cation binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0051973	positive regulation of telomerase activity	-	IEA	Process
GO:0051973	positive regulation of telomerase activity	-	ISO	Process
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	-	IEA	Process
GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	-	ISO	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	ISO	Process
GO:0090669	telomerase RNA stabilization	-	IEA	Process
GO:0090669	telomerase RNA stabilization	-	ISO	Process
GO:0110008	ncRNA deadenylation	-	IEA	Process
GO:0110008	ncRNA deadenylation	-	ISO	Process
GO:1904872	regulation of telomerase RNA localization to Cajal body	-	IEA	Process
GO:1904872	regulation of telomerase RNA localization to Cajal body	-	ISO	Process