EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000002980 (Gene tree)
Gene ID: 100360406
Gene Symbol: Tsr1
Alias: LOC100360406
Full Name: TSR1%2C ribosome maturation factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 11460 bases
Position: chr10:61746059-61757518
Accession: 2322150
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000003992	AARP2CN	PF08142.12	1.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000092464	-	2026	-	-	- (aa)	-	-
ENSRNOT00000092256	-	1550	-	ENSRNOP00000075885	65 (aa)	-	A0A0U1RS06
ENSRNOT00000092387	-	704	-	-	- (aa)	-	-
ENSRNOT00000003992	-	3314	XM_002724518	ENSRNOP00000003992	804 (aa)	XP_002724564	D3ZEM8
ENSRNOT00000092475	-	1399	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000002980's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000002980's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000002980	Tsr1	100	84.348	ENSG00000167721	TSR1	100	84.099	Homo_sapiens
ENSRNOG00000002980	Tsr1	99	54.633	ENSAPOG00000020891	tsr1	99	55.114	Acanthochromis_polyacanthus
ENSRNOG00000002980	Tsr1	100	84.049	ENSAMEG00000007599	TSR1	99	83.067	Ailuropoda_melanoleuca
ENSRNOG00000002980	Tsr1	99	56.458	ENSACIG00000007090	tsr1	99	55.407	Amphilophus_citrinellus
ENSRNOG00000002980	Tsr1	99	54.272	ENSAOCG00000023284	tsr1	99	54.776	Amphiprion_ocellaris
ENSRNOG00000002980	Tsr1	94	55.045	ENSAPEG00000008452	tsr1	100	55.584	Amphiprion_percula
ENSRNOG00000002980	Tsr1	99	53.469	ENSATEG00000021961	tsr1	99	54.112	Anabas_testudineus
ENSRNOG00000002980	Tsr1	92	69.396	ENSAPLG00000013422	TSR1	100	68.993	Anas_platyrhynchos
ENSRNOG00000002980	Tsr1	70	57.586	ENSACAG00000000859	TSR1	92	57.759	Anolis_carolinensis
ENSRNOG00000002980	Tsr1	100	85.572	ENSANAG00000031071	TSR1	100	84.453	Aotus_nancymaae
ENSRNOG00000002980	Tsr1	99	54.556	ENSACLG00000007595	tsr1	99	55.018	Astatotilapia_calliptera
ENSRNOG00000002980	Tsr1	50	48.068	ENSAMXG00000008470	tsr1	87	48.309	Astyanax_mexicanus
ENSRNOG00000002980	Tsr1	100	87.081	ENSBTAG00000004225	TSR1	100	87.578	Bos_taurus
ENSRNOG00000002980	Tsr1	97	38.770	WBGene00006497	tag-151	96	38.346	Caenorhabditis_elegans
ENSRNOG00000002980	Tsr1	100	84.950	ENSCJAG00000012456	TSR1	100	83.831	Callithrix_jacchus
ENSRNOG00000002980	Tsr1	100	84.243	ENSCAFG00000002106	-	100	84.243	Canis_familiaris
ENSRNOG00000002980	Tsr1	90	83.631	ENSCAFG00000019273	-	100	84.954	Canis_familiaris
ENSRNOG00000002980	Tsr1	100	84.139	ENSCAFG00020009728	TSR1	100	84.139	Canis_lupus_dingo
ENSRNOG00000002980	Tsr1	100	87.329	ENSCHIG00000023935	TSR1	100	87.826	Capra_hircus
ENSRNOG00000002980	Tsr1	100	84.950	ENSTSYG00000005468	TSR1	100	83.955	Carlito_syrichta
ENSRNOG00000002980	Tsr1	93	83.936	ENSCPOG00000014833	TSR1	99	84.203	Cavia_porcellus
ENSRNOG00000002980	Tsr1	93	85.389	ENSCCAG00000028962	TSR1	98	84.182	Cebus_capucinus
ENSRNOG00000002980	Tsr1	100	84.720	ENSCATG00000044262	TSR1	100	84.348	Cercocebus_atys
ENSRNOG00000002980	Tsr1	100	84.701	ENSCLAG00000005567	TSR1	100	84.701	Chinchilla_lanigera
ENSRNOG00000002980	Tsr1	100	84.845	ENSCSAG00000013788	TSR1	100	84.720	Chlorocebus_sabaeus
ENSRNOG00000002980	Tsr1	99	69.327	ENSCPBG00000020363	TSR1	97	69.345	Chrysemys_picta_bellii
ENSRNOG00000002980	Tsr1	97	45.786	ENSCING00000020658	-	99	45.250	Ciona_intestinalis
ENSRNOG00000002980	Tsr1	97	44.845	ENSCSAVG00000001875	-	99	44.975	Ciona_savignyi
ENSRNOG00000002980	Tsr1	100	74.876	ENSCANG00000033056	TSR1	100	87.774	Colobus_angolensis_palliatus
ENSRNOG00000002980	Tsr1	100	90.672	ENSCGRG00001023942	Tsr1	100	90.796	Cricetulus_griseus_chok1gshd
ENSRNOG00000002980	Tsr1	100	82.338	ENSCGRG00000013015	Tsr1	100	84.080	Cricetulus_griseus_crigri
ENSRNOG00000002980	Tsr1	99	53.735	ENSCSEG00000013009	tsr1	99	54.293	Cynoglossus_semilaevis
ENSRNOG00000002980	Tsr1	99	54.928	ENSCVAG00000000506	tsr1	99	55.218	Cyprinodon_variegatus
ENSRNOG00000002980	Tsr1	99	53.846	ENSDARG00000007744	tsr1	99	54.279	Danio_rerio
ENSRNOG00000002980	Tsr1	100	83.831	ENSDNOG00000004715	TSR1	100	84.751	Dasypus_novemcinctus
ENSRNOG00000002980	Tsr1	97	74.583	ENSDORG00000023234	-	100	74.198	Dipodomys_ordii
ENSRNOG00000002980	Tsr1	100	85.093	ENSDORG00000016371	-	100	85.093	Dipodomys_ordii
ENSRNOG00000002980	Tsr1	97	43.618	FBgn0037073	Tsr1	96	43.247	Drosophila_melanogaster
ENSRNOG00000002980	Tsr1	92	88.197	ENSETEG00000017534	TSR1	92	88.197	Echinops_telfairi
ENSRNOG00000002980	Tsr1	96	52.375	ENSEBUG00000013731	TSR1	98	52.051	Eptatretus_burgeri
ENSRNOG00000002980	Tsr1	100	86.087	ENSEASG00005009302	TSR1	97	86.211	Equus_asinus_asinus
ENSRNOG00000002980	Tsr1	100	85.714	ENSECAG00000009114	TSR1	100	85.839	Equus_caballus
ENSRNOG00000002980	Tsr1	99	53.892	ENSELUG00000020984	tsr1	95	54.051	Esox_lucius
ENSRNOG00000002980	Tsr1	100	84.969	ENSFCAG00000006313	TSR1	100	84.720	Felis_catus
ENSRNOG00000002980	Tsr1	99	68.681	ENSFALG00000006532	TSR1	99	69.297	Ficedula_albicollis
ENSRNOG00000002980	Tsr1	100	84.950	ENSFDAG00000006038	TSR1	100	84.701	Fukomys_damarensis
ENSRNOG00000002980	Tsr1	99	53.245	ENSFHEG00000003626	tsr1	99	53.606	Fundulus_heteroclitus
ENSRNOG00000002980	Tsr1	99	52.812	ENSGMOG00000010336	tsr1	99	53.301	Gadus_morhua
ENSRNOG00000002980	Tsr1	99	53.222	ENSGAFG00000012993	tsr1	99	53.865	Gambusia_affinis
ENSRNOG00000002980	Tsr1	99	53.431	ENSGACG00000010843	tsr1	99	53.140	Gasterosteus_aculeatus
ENSRNOG00000002980	Tsr1	99	69.799	ENSGAGG00000025619	-	99	69.317	Gopherus_agassizii
ENSRNOG00000002980	Tsr1	100	84.224	ENSGGOG00000001704	TSR1	100	84.472	Gorilla_gorilla
ENSRNOG00000002980	Tsr1	99	54.556	ENSHBUG00000017904	tsr1	100	55.882	Haplochromis_burtoni
ENSRNOG00000002980	Tsr1	100	85.217	ENSHGLG00000012806	-	100	85.093	Heterocephalus_glaber_female
ENSRNOG00000002980	Tsr1	97	75.450	ENSHGLG00000015688	-	99	74.550	Heterocephalus_glaber_female
ENSRNOG00000002980	Tsr1	100	85.217	ENSHGLG00100015392	TSR1	100	85.093	Heterocephalus_glaber_male
ENSRNOG00000002980	Tsr1	99	55.569	ENSHCOG00000001432	tsr1	99	56.188	Hippocampus_comes
ENSRNOG00000002980	Tsr1	99	54.337	ENSIPUG00000004618	tsr1	99	55.422	Ictalurus_punctatus
ENSRNOG00000002980	Tsr1	100	84.263	ENSSTOG00000011819	TSR1	100	84.882	Ictidomys_tridecemlineatus
ENSRNOG00000002980	Tsr1	92	80.352	ENSJJAG00000019505	Tsr1	95	80.352	Jaculus_jaculus
ENSRNOG00000002980	Tsr1	99	53.430	ENSKMAG00000005763	tsr1	99	53.083	Kryptolebias_marmoratus
ENSRNOG00000002980	Tsr1	99	53.837	ENSLBEG00000021823	tsr1	99	54.031	Labrus_bergylta
ENSRNOG00000002980	Tsr1	99	64.496	ENSLACG00000002197	TSR1	99	64.128	Latimeria_chalumnae
ENSRNOG00000002980	Tsr1	90	57.675	ENSLOCG00000006491	TSR1	97	57.973	Lepisosteus_oculatus
ENSRNOG00000002980	Tsr1	100	84.969	ENSMFAG00000021330	TSR1	100	84.596	Macaca_fascicularis
ENSRNOG00000002980	Tsr1	100	84.596	ENSMMUG00000017519	TSR1	100	84.472	Macaca_mulatta
ENSRNOG00000002980	Tsr1	100	84.596	ENSMNEG00000031382	TSR1	100	84.224	Macaca_nemestrina
ENSRNOG00000002980	Tsr1	100	84.596	ENSMLEG00000036733	TSR1	100	84.472	Mandrillus_leucophaeus
ENSRNOG00000002980	Tsr1	99	53.699	ENSMAMG00000017918	tsr1	99	54.251	Mastacembelus_armatus
ENSRNOG00000002980	Tsr1	99	54.567	ENSMZEG00005007477	tsr1	99	53.461	Maylandia_zebra
ENSRNOG00000002980	Tsr1	99	68.187	ENSMGAG00000005576	TSR1	99	68.557	Meleagris_gallopavo
ENSRNOG00000002980	Tsr1	100	86.087	ENSMICG00000012943	TSR1	100	86.211	Microcebus_murinus
ENSRNOG00000002980	Tsr1	100	89.441	ENSMOCG00000022764	Tsr1	100	90.062	Microtus_ochrogaster
ENSRNOG00000002980	Tsr1	99	53.584	ENSMMOG00000014280	tsr1	99	54.268	Mola_mola
ENSRNOG00000002980	Tsr1	100	77.019	ENSMODG00000010658	TSR1	100	77.019	Monodelphis_domestica
ENSRNOG00000002980	Tsr1	99	53.230	ENSMALG00000011681	tsr1	99	54.382	Monopterus_albus
ENSRNOG00000002980	Tsr1	100	94.154	MGP_CAROLIEiJ_G0016727	Tsr1	100	92.786	Mus_caroli
ENSRNOG00000002980	Tsr1	100	94.403	ENSMUSG00000038335	Tsr1	100	93.035	Mus_musculus
ENSRNOG00000002980	Tsr1	100	94.403	MGP_PahariEiJ_G0017864	Tsr1	100	93.035	Mus_pahari
ENSRNOG00000002980	Tsr1	100	94.527	MGP_SPRETEiJ_G0017570	Tsr1	100	93.159	Mus_spretus
ENSRNOG00000002980	Tsr1	82	85.084	ENSMPUG00000013000	TSR1	100	84.932	Mustela_putorius_furo
ENSRNOG00000002980	Tsr1	100	86.460	ENSMLUG00000003505	TSR1	100	86.584	Myotis_lucifugus
ENSRNOG00000002980	Tsr1	99	54.272	ENSNBRG00000020728	tsr1	99	54.710	Neolamprologus_brichardi
ENSRNOG00000002980	Tsr1	100	77.667	ENSNLEG00000017184	TSR1	100	79.104	Nomascus_leucogenys
ENSRNOG00000002980	Tsr1	100	71.340	ENSMEUG00000015828	TSR1	100	71.871	Notamacropus_eugenii
ENSRNOG00000002980	Tsr1	99	55.314	ENSONIG00000013131	tsr1	99	55.407	Oreochromis_niloticus
ENSRNOG00000002980	Tsr1	96	72.108	ENSOANG00000008637	TSR1	100	71.594	Ornithorhynchus_anatinus
ENSRNOG00000002980	Tsr1	100	84.596	ENSOCUG00000014256	TSR1	100	84.720	Oryctolagus_cuniculus
ENSRNOG00000002980	Tsr1	99	53.293	ENSORLG00000004926	tsr1	99	54.327	Oryzias_latipes
ENSRNOG00000002980	Tsr1	99	53.357	ENSORLG00020008792	tsr1	99	54.327	Oryzias_latipes_hni
ENSRNOG00000002980	Tsr1	99	53.174	ENSORLG00015013838	tsr1	99	54.207	Oryzias_latipes_hsok
ENSRNOG00000002980	Tsr1	99	53.550	ENSOMEG00000004830	tsr1	99	54.994	Oryzias_melastigma
ENSRNOG00000002980	Tsr1	100	84.464	ENSOGAG00000004492	TSR1	100	83.724	Otolemur_garnettii
ENSRNOG00000002980	Tsr1	100	87.453	ENSOARG00000015437	TSR1	97	87.950	Ovis_aries
ENSRNOG00000002980	Tsr1	100	84.472	ENSPPAG00000036355	TSR1	100	84.224	Pan_paniscus
ENSRNOG00000002980	Tsr1	100	84.969	ENSPPRG00000015519	-	100	84.720	Panthera_pardus
ENSRNOG00000002980	Tsr1	100	85.093	ENSPTIG00000010608	TSR1	100	84.845	Panthera_tigris_altaica
ENSRNOG00000002980	Tsr1	100	84.472	ENSPTRG00000008547	TSR1	100	84.224	Pan_troglodytes
ENSRNOG00000002980	Tsr1	100	81.491	ENSPANG00000024463	TSR1	100	80.994	Papio_anubis
ENSRNOG00000002980	Tsr1	99	54.198	ENSPKIG00000013972	tsr1	99	53.903	Paramormyrops_kingsleyae
ENSRNOG00000002980	Tsr1	88	69.252	ENSPSIG00000018258	TSR1	100	68.970	Pelodiscus_sinensis
ENSRNOG00000002980	Tsr1	99	55.583	ENSPMGG00000011577	tsr1	99	55.556	Periophthalmus_magnuspinnatus
ENSRNOG00000002980	Tsr1	100	89.925	ENSPEMG00000018033	Tsr1	100	89.925	Peromyscus_maniculatus_bairdii
ENSRNOG00000002980	Tsr1	100	76.303	ENSPCIG00000009357	TSR1	98	76.114	Phascolarctos_cinereus
ENSRNOG00000002980	Tsr1	99	53.771	ENSPFOG00000004483	TSR1	99	54.501	Poecilia_formosa
ENSRNOG00000002980	Tsr1	99	53.752	ENSPLAG00000022320	tsr1	99	54.367	Poecilia_latipinna
ENSRNOG00000002980	Tsr1	99	53.516	ENSPMEG00000004577	tsr1	99	53.606	Poecilia_mexicana
ENSRNOG00000002980	Tsr1	97	53.742	ENSPREG00000010354	tsr1	95	54.265	Poecilia_reticulata
ENSRNOG00000002980	Tsr1	100	76.885	ENSPPYG00000007792	TSR1	100	76.267	Pongo_abelii
ENSRNOG00000002980	Tsr1	53	88.372	ENSPCAG00000012973	-	72	88.372	Procavia_capensis
ENSRNOG00000002980	Tsr1	100	85.714	ENSPCOG00000017928	TSR1	100	85.590	Propithecus_coquereli
ENSRNOG00000002980	Tsr1	100	85.572	ENSPVAG00000002162	TSR1	100	84.701	Pteropus_vampyrus
ENSRNOG00000002980	Tsr1	99	54.676	ENSPNYG00000016163	tsr1	99	55.139	Pundamilia_nyererei
ENSRNOG00000002980	Tsr1	99	53.754	ENSPNAG00000008659	tsr1	99	54.436	Pygocentrus_nattereri
ENSRNOG00000002980	Tsr1	100	84.720	ENSRBIG00000040016	TSR1	100	84.596	Rhinopithecus_bieti
ENSRNOG00000002980	Tsr1	100	84.720	ENSRROG00000030361	TSR1	100	84.348	Rhinopithecus_roxellana
ENSRNOG00000002980	Tsr1	96	30.779	YDL060W	-	98	30.569	Saccharomyces_cerevisiae
ENSRNOG00000002980	Tsr1	100	85.199	ENSSBOG00000020785	TSR1	100	84.453	Saimiri_boliviensis_boliviensis
ENSRNOG00000002980	Tsr1	100	74.814	ENSSHAG00000011394	TSR1	100	74.566	Sarcophilus_harrisii
ENSRNOG00000002980	Tsr1	99	55.379	ENSSFOG00015005455	tsr1	99	55.501	Scleropages_formosus
ENSRNOG00000002980	Tsr1	99	52.885	ENSSMAG00000009504	tsr1	99	53.125	Scophthalmus_maximus
ENSRNOG00000002980	Tsr1	99	54.272	ENSSDUG00000012074	tsr1	99	54.327	Seriola_dumerili
ENSRNOG00000002980	Tsr1	99	54.567	ENSSLDG00000002031	tsr1	99	54.699	Seriola_lalandi_dorsalis
ENSRNOG00000002980	Tsr1	100	71.925	ENSSARG00000000759	TSR1	100	71.553	Sorex_araneus
ENSRNOG00000002980	Tsr1	99	67.651	ENSSPUG00000007042	TSR1	99	67.159	Sphenodon_punctatus
ENSRNOG00000002980	Tsr1	99	54.122	ENSSPAG00000021951	tsr1	99	54.676	Stegastes_partitus
ENSRNOG00000002980	Tsr1	100	86.211	ENSSSCG00000038534	TSR1	100	86.708	Sus_scrofa
ENSRNOG00000002980	Tsr1	90	71.096	ENSTGUG00000005883	TSR1	100	71.096	Taeniopygia_guttata
ENSRNOG00000002980	Tsr1	99	54.600	ENSTRUG00000004665	tsr1	99	55.231	Takifugu_rubripes
ENSRNOG00000002980	Tsr1	99	55.049	ENSTNIG00000016196	tsr1	99	54.969	Tetraodon_nigroviridis
ENSRNOG00000002980	Tsr1	67	90.000	ENSTBEG00000015275	-	67	90.000	Tupaia_belangeri
ENSRNOG00000002980	Tsr1	100	85.590	ENSTTRG00000001177	TSR1	100	86.087	Tursiops_truncatus
ENSRNOG00000002980	Tsr1	100	84.472	ENSUAMG00000025160	TSR1	100	83.946	Ursus_americanus
ENSRNOG00000002980	Tsr1	97	84.036	ENSUMAG00000009294	TSR1	98	84.735	Ursus_maritimus
ENSRNOG00000002980	Tsr1	84	81.454	ENSVPAG00000000228	TSR1	100	81.157	Vicugna_pacos
ENSRNOG00000002980	Tsr1	100	83.623	ENSVVUG00000021767	TSR1	100	83.623	Vulpes_vulpes
ENSRNOG00000002980	Tsr1	99	59.164	ENSXETG00000023797	tsr1	100	59.338	Xenopus_tropicalis
ENSRNOG00000002980	Tsr1	99	54.335	ENSXCOG00000009635	tsr1	99	55.392	Xiphophorus_couchianus
ENSRNOG00000002980	Tsr1	99	53.670	ENSXMAG00000001397	tsr1	96	54.106	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0034511	U3 snoRNA binding	21873635.	IBA	Function