EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000003354 (Gene tree)
Gene ID: 688518
Gene Symbol: Pabpc5
Alias: LOC688518
Full Name: poly A binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrX:92131209-92132357
Accession: 1587661
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000004462	RRM_5	PF13893.6	4.2e-13	1	3
ENSRNOP00000004462	RRM_5	PF13893.6	4.2e-13	2	3
ENSRNOP00000004462	RRM_5	PF13893.6	4.2e-13	3	3
ENSRNOP00000004462	RRM_1	PF00076.22	6.2e-78	1	4
ENSRNOP00000004462	RRM_1	PF00076.22	6.2e-78	2	4
ENSRNOP00000004462	RRM_1	PF00076.22	6.2e-78	3	4
ENSRNOP00000004462	RRM_1	PF00076.22	6.2e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000004462	-	1149	XM_008773376	ENSRNOP00000004462	382 (aa)	XP_008771598	D4A5H0

Gene Model

Click here to download ENSRNOG00000003354's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000003354's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000003354	Pabpc5	69	35.616	ENSRNOG00000020875	Celf3	55	35.616
ENSRNOG00000003354	Pabpc5	95	56.667	ENSRNOG00000012750	Pabpc1l	64	56.742
ENSRNOG00000003354	Pabpc5	95	59.626	ENSRNOG00000017367	Pabpc6	61	59.673
ENSRNOG00000003354	Pabpc5	96	57.808	ENSRNOG00000029749	Pabpc4l	99	57.703
ENSRNOG00000003354	Pabpc5	95	65.289	ENSRNOG00000008639	Pabpc1	69	65.449
ENSRNOG00000003354	Pabpc5	94	30.065	ENSRNOG00000006853	Elavl2	86	37.037
ENSRNOG00000003354	Pabpc5	95	66.391	ENSRNOG00000015642	Pabpc4	57	66.573
ENSRNOG00000003354	Pabpc5	95	60.556	ENSRNOG00000014527	Pabpc2	59	60.393
ENSRNOG00000003354	Pabpc5	63	33.333	ENSRNOG00000052224	Celf6	51	33.333
ENSRNOG00000003354	Pabpc5	96	64.130	ENSRNOG00000028592	AABR07035074.1	57	64.266

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000003354	Pabpc5	99	95.538	ENSG00000174740	PABPC5	99	95.538	Homo_sapiens
ENSRNOG00000003354	Pabpc5	99	94.226	ENSAMEG00000020114	PABPC5	100	94.226	Ailuropoda_melanoleuca
ENSRNOG00000003354	Pabpc5	99	95.538	ENSANAG00000005063	PABPC5	99	95.538	Aotus_nancymaae
ENSRNOG00000003354	Pabpc5	100	93.455	ENSBTAG00000019942	PABPC5	100	93.455	Bos_taurus
ENSRNOG00000003354	Pabpc5	99	95.013	ENSCJAG00000003665	PABPC5	99	95.013	Callithrix_jacchus
ENSRNOG00000003354	Pabpc5	100	93.979	ENSCAFG00000017452	PABPC5	100	93.979	Canis_familiaris
ENSRNOG00000003354	Pabpc5	100	93.979	ENSCHIG00000019004	PABPC5	100	93.979	Capra_hircus
ENSRNOG00000003354	Pabpc5	100	94.764	ENSTSYG00000036351	PABPC5	100	94.764	Carlito_syrichta
ENSRNOG00000003354	Pabpc5	99	84.293	ENSCAPG00000010714	PABPC5	100	84.293	Cavia_aperea
ENSRNOG00000003354	Pabpc5	100	91.885	ENSCPOG00000002555	PABPC5	100	91.885	Cavia_porcellus
ENSRNOG00000003354	Pabpc5	99	95.538	ENSCCAG00000032154	PABPC5	99	95.538	Cebus_capucinus
ENSRNOG00000003354	Pabpc5	99	95.801	ENSCATG00000043083	PABPC5	99	95.801	Cercocebus_atys
ENSRNOG00000003354	Pabpc5	100	92.670	ENSCLAG00000000647	PABPC5	100	92.670	Chinchilla_lanigera
ENSRNOG00000003354	Pabpc5	99	95.801	ENSCSAG00000000065	PABPC5	99	95.801	Chlorocebus_sabaeus
ENSRNOG00000003354	Pabpc5	99	95.801	ENSCANG00000011473	PABPC5	99	95.801	Colobus_angolensis_palliatus
ENSRNOG00000003354	Pabpc5	100	92.408	ENSCGRG00000018699	Pabpc5	100	92.408	Cricetulus_griseus_crigri
ENSRNOG00000003354	Pabpc5	100	76.762	ENSETEG00000011832	PABPC5	100	76.762	Echinops_telfairi
ENSRNOG00000003354	Pabpc5	100	94.241	ENSEASG00005014396	PABPC5	100	94.241	Equus_asinus_asinus
ENSRNOG00000003354	Pabpc5	100	94.241	ENSECAG00000003452	PABPC5	100	94.241	Equus_caballus
ENSRNOG00000003354	Pabpc5	100	93.979	ENSFCAG00000004998	PABPC5	100	93.979	Felis_catus
ENSRNOG00000003354	Pabpc5	100	93.194	ENSFDAG00000000126	PABPC5	100	93.194	Fukomys_damarensis
ENSRNOG00000003354	Pabpc5	99	95.538	ENSGGOG00000007622	PABPC5	99	95.538	Gorilla_gorilla
ENSRNOG00000003354	Pabpc5	95	92.661	ENSJJAG00000011960	Pabpc5	100	92.661	Jaculus_jaculus
ENSRNOG00000003354	Pabpc5	99	95.801	ENSMFAG00000024561	PABPC5	99	95.801	Macaca_fascicularis
ENSRNOG00000003354	Pabpc5	99	95.801	ENSMMUG00000011562	PABPC5	99	95.801	Macaca_mulatta
ENSRNOG00000003354	Pabpc5	99	95.801	ENSMNEG00000037604	PABPC5	99	95.801	Macaca_nemestrina
ENSRNOG00000003354	Pabpc5	99	95.801	ENSMLEG00000028318	PABPC5	99	95.801	Mandrillus_leucophaeus
ENSRNOG00000003354	Pabpc5	100	93.979	ENSMICG00000041706	PABPC5	100	93.979	Microcebus_murinus
ENSRNOG00000003354	Pabpc5	100	94.241	ENSMOCG00000001554	Pabpc5	100	94.241	Microtus_ochrogaster
ENSRNOG00000003354	Pabpc5	99	96.316	MGP_CAROLIEiJ_G0033367	Pabpc5	99	96.316	Mus_caroli
ENSRNOG00000003354	Pabpc5	99	96.842	ENSMUSG00000034732	Pabpc5	99	96.842	Mus_musculus
ENSRNOG00000003354	Pabpc5	100	97.120	MGP_PahariEiJ_G0031908	Pabpc5	100	97.120	Mus_pahari
ENSRNOG00000003354	Pabpc5	99	96.842	MGP_SPRETEiJ_G0034533	Pabpc5	99	96.842	Mus_spretus
ENSRNOG00000003354	Pabpc5	100	93.717	ENSMPUG00000018465	PABPC5	100	93.717	Mustela_putorius_furo
ENSRNOG00000003354	Pabpc5	100	93.717	ENSMLUG00000008244	PABPC5	100	93.717	Myotis_lucifugus
ENSRNOG00000003354	Pabpc5	95	93.578	ENSNGAG00000004371	Pabpc5	100	93.578	Nannospalax_galili
ENSRNOG00000003354	Pabpc5	99	95.538	ENSNLEG00000035086	PABPC5	99	95.538	Nomascus_leucogenys
ENSRNOG00000003354	Pabpc5	98	96.833	ENSOPRG00000000856	PABPC5	100	96.833	Ochotona_princeps
ENSRNOG00000003354	Pabpc5	100	94.503	ENSOCUG00000010919	PABPC5	100	94.503	Oryctolagus_cuniculus
ENSRNOG00000003354	Pabpc5	100	94.503	ENSOGAG00000006882	PABPC5	100	94.503	Otolemur_garnettii
ENSRNOG00000003354	Pabpc5	100	94.241	ENSOARG00000010260	PABPC5	100	94.241	Ovis_aries
ENSRNOG00000003354	Pabpc5	99	95.801	ENSPPAG00000007378	PABPC5	99	95.801	Pan_paniscus
ENSRNOG00000003354	Pabpc5	100	93.979	ENSPPRG00000010742	PABPC5	100	93.979	Panthera_pardus
ENSRNOG00000003354	Pabpc5	100	93.979	ENSPTIG00000001480	PABPC5	100	93.979	Panthera_tigris_altaica
ENSRNOG00000003354	Pabpc5	99	95.538	ENSPTRG00000022078	PABPC5	99	95.538	Pan_troglodytes
ENSRNOG00000003354	Pabpc5	99	95.801	ENSPANG00000018282	PABPC5	99	95.801	Papio_anubis
ENSRNOG00000003354	Pabpc5	100	93.717	ENSPEMG00000000171	Pabpc5	100	93.717	Peromyscus_maniculatus_bairdii
ENSRNOG00000003354	Pabpc5	99	95.538	ENSPPYG00000020526	PABPC5	99	95.538	Pongo_abelii
ENSRNOG00000003354	Pabpc5	99	96.000	ENSPCAG00000015577	PABPC5	100	96.000	Procavia_capensis
ENSRNOG00000003354	Pabpc5	100	94.241	ENSPCOG00000000676	PABPC5	100	94.241	Propithecus_coquereli
ENSRNOG00000003354	Pabpc5	100	94.241	ENSPVAG00000006465	PABPC5	100	94.241	Pteropus_vampyrus
ENSRNOG00000003354	Pabpc5	99	95.801	ENSRBIG00000011760	PABPC5	99	95.801	Rhinopithecus_bieti
ENSRNOG00000003354	Pabpc5	99	95.801	ENSRROG00000036708	PABPC5	99	95.801	Rhinopithecus_roxellana
ENSRNOG00000003354	Pabpc5	99	95.276	ENSSBOG00000008658	PABPC5	99	95.276	Saimiri_boliviensis_boliviensis
ENSRNOG00000003354	Pabpc5	100	91.885	ENSSARG00000014012	PABPC5	100	91.885	Sorex_araneus
ENSRNOG00000003354	Pabpc5	100	93.979	ENSSSCG00000040194	PABPC5	100	93.979	Sus_scrofa
ENSRNOG00000003354	Pabpc5	100	95.550	ENSTBEG00000016482	PABPC5	100	95.550	Tupaia_belangeri
ENSRNOG00000003354	Pabpc5	100	93.717	ENSUAMG00000013627	PABPC5	100	93.717	Ursus_americanus
ENSRNOG00000003354	Pabpc5	100	93.455	ENSUMAG00000023934	PABPC5	100	93.455	Ursus_maritimus
ENSRNOG00000003354	Pabpc5	100	94.241	ENSVPAG00000001063	PABPC5	100	94.241	Vicugna_pacos
ENSRNOG00000003354	Pabpc5	100	94.241	ENSVVUG00000013172	PABPC5	100	94.241	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component