EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000003386 (Gene tree)
Gene ID
287847
Gene Symbol
Rbfox3
Alias
Hrnbp3|LOC287847|Neun|RGD1560070
Full Name
RNA binding fox-1 homolog 3
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
22664 bases
Position
chr10:107516995-107539658
Accession
1560070
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000072266Fox-1_CPF12414.82.9e-4611
ENSRNOP00000004524Fox-1_CPF12414.83.6e-4211
ENSRNOP00000072266RRM_1PF00076.228.6e-1911
ENSRNOP00000004524RRM_1PF00076.221.2e-1811
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000004524-1128-ENSRNOP00000004524375 (aa)XP_017452651D4A2H6
ENSRNOT00000089346-1442XM_008768343ENSRNOP00000072266314 (aa)XP_008766567A0A0G2K2J4
Gene Model
Click here to download ENSRNOG00000003386's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000003386's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000003386Rbfox310069.388ENSRNOG00000002827Rbfox17767.378
ENSRNOG00000003386Rbfox39661.561ENSRNOG00000004688Rbfox28258.187
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000003386Rbfox310096.815ENSG00000167281RBFOX310097.152Homo_sapiens
ENSRNOG00000003386Rbfox39371.044ENSAPOG00000015658-8089.655Acanthochromis_polyacanthus
ENSRNOG00000003386Rbfox310081.962ENSAPOG00000021630rbfox3b8179.402Acanthochromis_polyacanthus
ENSRNOG00000003386Rbfox39788.854ENSAMEG00000014170RBFOX38287.926Ailuropoda_melanoleuca
ENSRNOG00000003386Rbfox310077.532ENSACIG00000010817rbfox3b8687.500Amphilophus_citrinellus
ENSRNOG00000003386Rbfox39569.811ENSACIG00000003768-7273.282Amphilophus_citrinellus
ENSRNOG00000003386Rbfox310081.962ENSAOCG00000012358rbfox3b8179.402Amphiprion_ocellaris
ENSRNOG00000003386Rbfox39576.821ENSAOCG00000010786-7284.848Amphiprion_ocellaris
ENSRNOG00000003386Rbfox310072.468ENSAPEG00000019081rbfox3b7487.500Amphiprion_percula
ENSRNOG00000003386Rbfox39570.679ENSAPEG00000015891-7189.655Amphiprion_percula
ENSRNOG00000003386Rbfox310072.543ENSATEG00000019945rbfox3b9572.205Anabas_testudineus
ENSRNOG00000003386Rbfox39577.228ENSATEG00000023101-9274.503Anabas_testudineus
ENSRNOG00000003386Rbfox310088.608ENSACAG00000016093RBFOX38387.375Anolis_carolinensis
ENSRNOG00000003386Rbfox310095.860ENSANAG00000023457RBFOX310095.860Aotus_nancymaae
ENSRNOG00000003386Rbfox310080.757ENSACLG00000025552-8178.477Astatotilapia_calliptera
ENSRNOG00000003386Rbfox310081.013ENSACLG00000020011rbfox3b9578.738Astatotilapia_calliptera
ENSRNOG00000003386Rbfox39580.921ENSAMXG00000037246rbfox3a9080.921Astyanax_mexicanus
ENSRNOG00000003386Rbfox310076.025ENSAMXG00000042841rbfox3b8573.510Astyanax_mexicanus
ENSRNOG00000003386Rbfox39284.971ENSBTAG00000006280RBFOX39584.104Bos_taurus
ENSRNOG00000003386Rbfox39394.236ENSCJAG00000009563RBFOX39693.642Callithrix_jacchus
ENSRNOG00000003386Rbfox37696.250ENSCAFG00000005547RBFOX38596.250Canis_familiaris
ENSRNOG00000003386Rbfox310097.067ENSCAFG00020008126RBFOX310097.067Canis_lupus_dingo
ENSRNOG00000003386Rbfox39893.989ENSCHIG00000009124RBFOX39893.169Capra_hircus
ENSRNOG00000003386Rbfox39697.784ENSTSYG00000029617RBFOX310097.784Carlito_syrichta
ENSRNOG00000003386Rbfox35496.450ENSCAPG00000010217RBFOX310096.450Cavia_aperea
ENSRNOG00000003386Rbfox310096.809ENSCPOG00000021703RBFOX310096.809Cavia_porcellus
ENSRNOG00000003386Rbfox310095.860ENSCCAG00000028450RBFOX310095.860Cebus_capucinus
ENSRNOG00000003386Rbfox310096.815ENSCATG00000018349RBFOX310096.815Cercocebus_atys
ENSRNOG00000003386Rbfox310097.333ENSCLAG00000006449RBFOX310097.333Chinchilla_lanigera
ENSRNOG00000003386Rbfox310097.134ENSCSAG00000002355RBFOX310097.134Chlorocebus_sabaeus
ENSRNOG00000003386Rbfox39588.629ENSCPBG00000010904RBFOX39587.960Chrysemys_picta_bellii
ENSRNOG00000003386Rbfox310097.600ENSCANG00000043120RBFOX310097.600Colobus_angolensis_palliatus
ENSRNOG00000003386Rbfox310099.200ENSCGRG00001019476Rbfox310099.200Cricetulus_griseus_chok1gshd
ENSRNOG00000003386Rbfox310099.200ENSCGRG00000003268Rbfox310099.200Cricetulus_griseus_crigri
ENSRNOG00000003386Rbfox310065.517ENSCSEG00000020606RBFOX38365.972Cynoglossus_semilaevis
ENSRNOG00000003386Rbfox310078.549ENSCSEG00000015567RBFOX37187.097Cynoglossus_semilaevis
ENSRNOG00000003386Rbfox310081.962ENSCVAG00000006882rbfox3b8179.402Cyprinodon_variegatus
ENSRNOG00000003386Rbfox310071.746ENSDARG00000074310rbfox3b9671.111Danio_rerio
ENSRNOG00000003386Rbfox39579.934ENSDARG00000010083rbfox3a9479.032Danio_rerio
ENSRNOG00000003386Rbfox38779.635ENSDNOG00000039391RBFOX39077.353Dasypus_novemcinctus
ENSRNOG00000003386Rbfox39685.278ENSDORG00000005352Rbfox39683.333Dipodomys_ordii
ENSRNOG00000003386Rbfox38460.727ENSEBUG00000013559RBFOX37162.109Eptatretus_burgeri
ENSRNOG00000003386Rbfox310070.732ENSEBUG00000002129RBFOX38873.163Eptatretus_burgeri
ENSRNOG00000003386Rbfox310097.134ENSEASG00005005059RBFOX310097.134Equus_asinus_asinus
ENSRNOG00000003386Rbfox310096.815ENSECAG00000023811RBFOX310096.815Equus_caballus
ENSRNOG00000003386Rbfox39881.967ENSEEUG00000013974RBFOX39880.055Erinaceus_europaeus
ENSRNOG00000003386Rbfox310080.696ENSELUG00000017963rbfox3b9568.106Esox_lucius
ENSRNOG00000003386Rbfox36162.827ENSELUG00000009807-5067.647Esox_lucius
ENSRNOG00000003386Rbfox39793.443ENSFCAG00000002555RBFOX39792.459Felis_catus
ENSRNOG00000003386Rbfox39572.508ENSFALG00000012288RBFOX38173.716Ficedula_albicollis
ENSRNOG00000003386Rbfox310092.287ENSFDAG00000007489RBFOX310092.287Fukomys_damarensis
ENSRNOG00000003386Rbfox310072.468ENSFHEG00000008550rbfox3b9569.435Fundulus_heteroclitus
ENSRNOG00000003386Rbfox310063.325ENSGMOG00000019304-9966.265Gadus_morhua
ENSRNOG00000003386Rbfox39590.635ENSGALG00000032889RBFOX38389.632Gallus_gallus
ENSRNOG00000003386Rbfox39779.870ENSGAFG00000005025rbfox3b8679.070Gambusia_affinis
ENSRNOG00000003386Rbfox39673.151ENSGACG00000002138-9671.233Gasterosteus_aculeatus
ENSRNOG00000003386Rbfox39588.629ENSGAGG00000020025RBFOX39587.960Gopherus_agassizii
ENSRNOG00000003386Rbfox310097.333ENSGGOG00000012546RBFOX310097.333Gorilla_gorilla
ENSRNOG00000003386Rbfox310080.442ENSHBUG00000023098-8678.477Haplochromis_burtoni
ENSRNOG00000003386Rbfox310081.013ENSHBUG00000018099rbfox3b8179.070Haplochromis_burtoni
ENSRNOG00000003386Rbfox310096.032ENSHGLG00000008679RBFOX310096.032Heterocephalus_glaber_female
ENSRNOG00000003386Rbfox39892.141ENSHGLG00100014739RBFOX39892.141Heterocephalus_glaber_male
ENSRNOG00000003386Rbfox310070.978ENSHCOG00000001863RBFOX38278.788Hippocampus_comes
ENSRNOG00000003386Rbfox39675.415ENSHCOG00000007444RBFOX37675.585Hippocampus_comes
ENSRNOG00000003386Rbfox310064.451ENSIPUG00000021966rbfox3b8874.262Ictalurus_punctatus
ENSRNOG00000003386Rbfox39579.276ENSIPUG00000012010rbfox3a9079.276Ictalurus_punctatus
ENSRNOG00000003386Rbfox38196.429ENSSTOG00000026817RBFOX310096.429Ictidomys_tridecemlineatus
ENSRNOG00000003386Rbfox310097.067ENSJJAG00000014167Rbfox310097.067Jaculus_jaculus
ENSRNOG00000003386Rbfox310081.962ENSKMAG00000006726rbfox3b8179.402Kryptolebias_marmoratus
ENSRNOG00000003386Rbfox310081.646ENSLBEG00000004030rbfox3b8684.375Labrus_bergylta
ENSRNOG00000003386Rbfox39582.450ENSLBEG00000022508-8179.801Labrus_bergylta
ENSRNOG00000003386Rbfox39575.229ENSLACG00000018409-8374.540Latimeria_chalumnae
ENSRNOG00000003386Rbfox39584.106ENSLOCG00000012267rbfox3a9084.106Lepisosteus_oculatus
ENSRNOG00000003386Rbfox39893.716ENSLAFG00000016623RBFOX39893.169Loxodonta_africana
ENSRNOG00000003386Rbfox39696.953ENSMFAG00000002247RBFOX310096.953Macaca_fascicularis
ENSRNOG00000003386Rbfox310096.815ENSMMUG00000023028RBFOX310096.815Macaca_mulatta
ENSRNOG00000003386Rbfox310097.134ENSMNEG00000041147RBFOX310097.134Macaca_nemestrina
ENSRNOG00000003386Rbfox310096.815ENSMLEG00000025686RBFOX310096.815Mandrillus_leucophaeus
ENSRNOG00000003386Rbfox310076.752ENSMAMG00000019810rbfox3b8687.500Mastacembelus_armatus
ENSRNOG00000003386Rbfox39576.238ENSMAMG00000020600-8573.290Mastacembelus_armatus
ENSRNOG00000003386Rbfox39559.215ENSMZEG00005003055-5988.148Maylandia_zebra
ENSRNOG00000003386Rbfox310081.013ENSMZEG00005000781rbfox3b8179.070Maylandia_zebra
ENSRNOG00000003386Rbfox36190.625ENSMGAG00000005600RBFOX37390.625Meleagris_gallopavo
ENSRNOG00000003386Rbfox310097.872ENSMAUG00000013543Rbfox310097.872Mesocricetus_auratus
ENSRNOG00000003386Rbfox310096.000ENSMICG00000014898RBFOX310096.000Microcebus_murinus
ENSRNOG00000003386Rbfox310098.667ENSMOCG00000015373Rbfox310098.667Microtus_ochrogaster
ENSRNOG00000003386Rbfox310080.189ENSMMOG00000020193rbfox3b8178.548Mola_mola
ENSRNOG00000003386Rbfox39590.635ENSMODG00000002089RBFOX38389.632Monodelphis_domestica
ENSRNOG00000003386Rbfox310081.013ENSMALG00000020407rbfox3b8178.405Monopterus_albus
ENSRNOG00000003386Rbfox310082.334ENSMALG00000018270-8390.625Monopterus_albus
ENSRNOG00000003386Rbfox310099.200MGP_CAROLIEiJ_G0017487Rbfox3100100.000Mus_caroli
ENSRNOG00000003386Rbfox310098.933ENSMUSG00000025576Rbfox310099.408Mus_musculus
ENSRNOG00000003386Rbfox3100100.000MGP_PahariEiJ_G0018614Rbfox3100100.000Mus_pahari
ENSRNOG00000003386Rbfox310099.467MGP_SPRETEiJ_G0018331Rbfox3100100.000Mus_spretus
ENSRNOG00000003386Rbfox39784.211ENSMPUG00000012319RBFOX38983.333Mustela_putorius_furo
ENSRNOG00000003386Rbfox310098.400ENSNGAG00000018006Rbfox310098.400Nannospalax_galili
ENSRNOG00000003386Rbfox310079.747ENSNBRG00000010102rbfox3b7586.667Neolamprologus_brichardi
ENSRNOG00000003386Rbfox310072.555ENSNBRG00000022885-7887.500Neolamprologus_brichardi
ENSRNOG00000003386Rbfox310067.722ENSNLEG00000000153-8292.857Nomascus_leucogenys
ENSRNOG00000003386Rbfox39265.029ENSMEUG00000004218-7593.103Notamacropus_eugenii
ENSRNOG00000003386Rbfox37697.753ENSOPRG00000016279-7597.753Ochotona_princeps
ENSRNOG00000003386Rbfox310097.333ENSODEG00000009433RBFOX310097.333Octodon_degus
ENSRNOG00000003386Rbfox310081.388ENSONIG00000007282-8779.139Oreochromis_niloticus
ENSRNOG00000003386Rbfox310081.962ENSONIG00000009549rbfox3b9674.521Oreochromis_niloticus
ENSRNOG00000003386Rbfox37780.139ENSOCUG00000014217RBFOX37879.443Oryctolagus_cuniculus
ENSRNOG00000003386Rbfox310081.646ENSORLG00000000905rbfox3b6479.070Oryzias_latipes
ENSRNOG00000003386Rbfox310081.646ENSORLG00020018030rbfox3b8179.070Oryzias_latipes_hni
ENSRNOG00000003386Rbfox310081.329ENSORLG00015009200rbfox3b8684.375Oryzias_latipes_hsok
ENSRNOG00000003386Rbfox37675.581ENSOMEG00000014677rbfox3b7667.078Oryzias_melastigma
ENSRNOG00000003386Rbfox310096.497ENSOGAG00000029595RBFOX38496.497Otolemur_garnettii
ENSRNOG00000003386Rbfox39363.665ENSOARG00000002908RBFOX39254.386Ovis_aries
ENSRNOG00000003386Rbfox39196.864ENSPPAG00000025383RBFOX39996.864Pan_paniscus
ENSRNOG00000003386Rbfox39291.618ENSPPRG00000007819RBFOX39690.751Panthera_pardus
ENSRNOG00000003386Rbfox310097.333ENSPTRG00000009727RBFOX310097.333Pan_troglodytes
ENSRNOG00000003386Rbfox310096.815ENSPANG00000019837RBFOX310096.815Papio_anubis
ENSRNOG00000003386Rbfox310066.981ENSPKIG00000022633-8064.356Paramormyrops_kingsleyae
ENSRNOG00000003386Rbfox39584.768ENSPKIG00000010299rbfox3a7384.314Paramormyrops_kingsleyae
ENSRNOG00000003386Rbfox38480.224ENSPMGG00000008000rbfox3b7780.237Periophthalmus_magnuspinnatus
ENSRNOG00000003386Rbfox310098.933ENSPEMG00000010500Rbfox310098.933Peromyscus_maniculatus_bairdii
ENSRNOG00000003386Rbfox35675.263ENSPMAG00000008689rbfox3b9377.895Petromyzon_marinus
ENSRNOG00000003386Rbfox39689.972ENSPCIG00000005766RBFOX39690.751Phascolarctos_cinereus
ENSRNOG00000003386Rbfox310081.962ENSPFOG00000018294rbfox3b9663.388Poecilia_formosa
ENSRNOG00000003386Rbfox37778.862ENSPLAG00000000481rbfox3b7190.698Poecilia_latipinna
ENSRNOG00000003386Rbfox310072.468ENSPMEG00000022997rbfox3b9569.435Poecilia_mexicana
ENSRNOG00000003386Rbfox310082.019ENSPREG00000012886rbfox3b8679.470Poecilia_reticulata
ENSRNOG00000003386Rbfox39190.592ENSPPYG00000008704RBFOX38490.592Pongo_abelii
ENSRNOG00000003386Rbfox39292.197ENSPCAG00000001401RBFOX39690.173Procavia_capensis
ENSRNOG00000003386Rbfox39795.856ENSPCOG00000012689RBFOX310096.122Propithecus_coquereli
ENSRNOG00000003386Rbfox39287.861ENSPVAG00000015243RBFOX39687.861Pteropus_vampyrus
ENSRNOG00000003386Rbfox310068.868ENSPNYG00000010414rbfox3b7586.667Pundamilia_nyererei
ENSRNOG00000003386Rbfox310073.418ENSPNYG00000009079-7584.848Pundamilia_nyererei
ENSRNOG00000003386Rbfox310063.608ENSPNAG00000018173rbfox3b7781.818Pygocentrus_nattereri
ENSRNOG00000003386Rbfox39580.592ENSPNAG00000002889rbfox3a8180.592Pygocentrus_nattereri
ENSRNOG00000003386Rbfox310097.134ENSRBIG00000040449RBFOX38797.134Rhinopithecus_bieti
ENSRNOG00000003386Rbfox310097.134ENSRROG00000000766RBFOX310097.134Rhinopithecus_roxellana
ENSRNOG00000003386Rbfox310096.533ENSSBOG00000031591RBFOX310096.533Saimiri_boliviensis_boliviensis
ENSRNOG00000003386Rbfox39582.477ENSSHAG00000016076RBFOX39579.264Sarcophilus_harrisii
ENSRNOG00000003386Rbfox39669.307ENSSFOG00015004716RBFOX38469.868Scleropages_formosus
ENSRNOG00000003386Rbfox39583.444ENSSFOG00015023260rbfox3a8183.444Scleropages_formosus
ENSRNOG00000003386Rbfox310079.560ENSSMAG00000019052-9576.159Scophthalmus_maximus
ENSRNOG00000003386Rbfox310077.177ENSSMAG00000012618rbfox3b7175.472Scophthalmus_maximus
ENSRNOG00000003386Rbfox310072.468ENSSDUG00000023183rbfox3b9569.435Seriola_dumerili
ENSRNOG00000003386Rbfox39574.834ENSSDUG00000015801-7487.500Seriola_dumerili
ENSRNOG00000003386Rbfox310081.962ENSSLDG00000000149rbfox3b8179.402Seriola_lalandi_dorsalis
ENSRNOG00000003386Rbfox39577.483ENSSLDG00000016098-7287.500Seriola_lalandi_dorsalis
ENSRNOG00000003386Rbfox39589.037ENSSPUG00000011733RBFOX39588.372Sphenodon_punctatus
ENSRNOG00000003386Rbfox39071.329ENSSPAG00000004898-7574.118Stegastes_partitus
ENSRNOG00000003386Rbfox310072.468ENSSPAG00000017571rbfox3b7287.500Stegastes_partitus
ENSRNOG00000003386Rbfox38893.051ENSSSCG00000039498RBFOX310093.051Sus_scrofa
ENSRNOG00000003386Rbfox310077.532ENSTRUG00000004894rbfox3b8676.299Takifugu_rubripes
ENSRNOG00000003386Rbfox310072.779ENSTNIG00000011278rbfox3b8270.958Tetraodon_nigroviridis
ENSRNOG00000003386Rbfox39662.778ENSTBEG00000004296-9660.833Tupaia_belangeri
ENSRNOG00000003386Rbfox39288.439ENSTTRG00000003676RBFOX39687.572Tursiops_truncatus
ENSRNOG00000003386Rbfox310095.860ENSUAMG00000004668RBFOX310095.860Ursus_americanus
ENSRNOG00000003386Rbfox310096.497ENSVVUG00000017864RBFOX310096.497Vulpes_vulpes
ENSRNOG00000003386Rbfox310066.962ENSXETG00000020236rbfox39158.462Xenopus_tropicalis
ENSRNOG00000003386Rbfox310080.442ENSXCOG00000018262rbfox3b8584.615Xiphophorus_couchianus
ENSRNOG00000003386Rbfox310081.962ENSXMAG00000012939rbfox3b8179.402Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome-ISOProcess
GO:0003677DNA binding-IEAFunction
GO:0003677DNA binding-ISOFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005737cytoplasm-ISOComponent
GO:0006397mRNA processing-IEAProcess
GO:0007399nervous system development21873635.IBAProcess
GO:0008380RNA splicing-IEAProcess
GO:0043025neuronal cell body-ISOComponent
GO:0043204perikaryon-IEAComponent
GO:0043204perikaryon-ISOComponent

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