EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000003455 (Gene tree)
Gene ID: 287095
Gene Symbol: Zfp13
Alias: LOC287095
Full Name: zinc finger protein 13
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 8142 bases
Position: chr10:12908643-12916784
Accession: 1304577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	1	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	2	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	3	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	4	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	5	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	6	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	7	8
ENSRNOP00000004589	zf-C2H2	PF00096.26	7.6e-46	8	8
ENSRNOP00000004589	zf-met	PF12874.7	0.00044	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000004589	-	2125	-	ENSRNOP00000004589	399 (aa)	-	D3ZT76

Gene Model

Click here to download ENSRNOG00000003455's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000003455's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000003455	Zfp13	58	43.103	ENSRNOG00000028628	LOC100911196	79	43.103
ENSRNOG00000003455	Zfp13	62	47.012	ENSRNOG00000027923	Mynn	50	47.917
ENSRNOG00000003455	Zfp13	56	55.556	ENSRNOG00000019059	Zfp1	84	55.556
ENSRNOG00000003455	Zfp13	66	51.485	ENSRNOG00000061533	AABR07001926.3	90	51.485
ENSRNOG00000003455	Zfp13	65	54.222	ENSRNOG00000014331	Zfp810	86	54.222
ENSRNOG00000003455	Zfp13	60	47.312	ENSRNOG00000023679	Prdm5	76	47.945
ENSRNOG00000003455	Zfp13	87	50.988	ENSRNOG00000019416	Zfp61	89	55.556
ENSRNOG00000003455	Zfp13	60	54.667	ENSRNOG00000042777	Zfp28	63	54.667
ENSRNOG00000003455	Zfp13	60	43.066	ENSRNOG00000013586	Snai3	68	43.382
ENSRNOG00000003455	Zfp13	57	46.154	ENSRNOG00000007576	Zfp597	65	32.620
ENSRNOG00000003455	Zfp13	58	50.649	ENSRNOG00000002713	Zfp672	89	53.000
ENSRNOG00000003455	Zfp13	72	55.357	ENSRNOG00000014712	Zfp39	60	55.357
ENSRNOG00000003455	Zfp13	75	51.351	ENSRNOG00000015188	AABR07053681.1	87	53.614
ENSRNOG00000003455	Zfp13	64	55.556	ENSRNOG00000043341	Zfp51	93	55.556
ENSRNOG00000003455	Zfp13	65	51.739	ENSRNOG00000024056	Zfp17	75	53.182
ENSRNOG00000003455	Zfp13	80	53.394	ENSRNOG00000049259	LOC102549842	93	51.802
ENSRNOG00000003455	Zfp13	66	30.045	ENSRNOG00000016874	Zfp521	52	37.349
ENSRNOG00000003455	Zfp13	60	34.314	ENSRNOG00000016279	Zfp865	65	35.377
ENSRNOG00000003455	Zfp13	58	43.878	ENSRNOG00000013460	Zfp319	86	39.442
ENSRNOG00000003455	Zfp13	70	42.647	ENSRNOG00000047699	Snai2	83	42.647
ENSRNOG00000003455	Zfp13	75	54.464	ENSRNOG00000052406	LOC102552527	93	54.464
ENSRNOG00000003455	Zfp13	61	42.925	ENSRNOG00000008239	Repin1	85	42.925
ENSRNOG00000003455	Zfp13	77	59.111	ENSRNOG00000030517	Zfp879	77	59.111
ENSRNOG00000003455	Zfp13	94	52.889	ENSRNOG00000025937	Zfp26	87	52.889
ENSRNOG00000003455	Zfp13	64	48.889	ENSRNOG00000022431	Zfp867	81	48.673
ENSRNOG00000003455	Zfp13	62	50.222	ENSRNOG00000016417	Zfp136	87	50.222
ENSRNOG00000003455	Zfp13	63	38.667	ENSRNOG00000011137	Zbtb41	51	38.667
ENSRNOG00000003455	Zfp13	62	58.222	ENSRNOG00000032625	AC118165.1	100	58.824
ENSRNOG00000003455	Zfp13	61	47.475	ENSRNOG00000006684	Zfp317	90	49.065
ENSRNOG00000003455	Zfp13	59	56.923	ENSRNOG00000029490	Znf768	51	55.941
ENSRNOG00000003455	Zfp13	77	39.286	ENSRNOG00000055761	Zfp574	74	39.181
ENSRNOG00000003455	Zfp13	75	55.319	ENSRNOG00000048394	Zfp560	74	55.319
ENSRNOG00000003455	Zfp13	60	54.626	ENSRNOG00000030308	Zfp251	67	57.778

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000003455	Zfp13	82	79.042	ENSG00000122386	ZNF205	60	79.341	Homo_sapiens
ENSRNOG00000003455	Zfp13	82	79.456	ENSANAG00000026833	ZNF205	63	79.279	Aotus_nancymaae
ENSRNOG00000003455	Zfp13	82	79.341	ENSCJAG00000047263	ZNF205	60	79.341	Callithrix_jacchus
ENSRNOG00000003455	Zfp13	83	78.507	ENSCATG00000031370	ZNF205	60	78.743	Cercocebus_atys
ENSRNOG00000003455	Zfp13	83	77.910	ENSCSAG00000010150	ZNF205	60	78.144	Chlorocebus_sabaeus
ENSRNOG00000003455	Zfp13	83	77.844	ENSCANG00000041423	ZNF205	60	78.378	Colobus_angolensis_palliatus
ENSRNOG00000003455	Zfp13	64	84.436	ENSDORG00000023529	Zfp13	54	81.081	Dipodomys_ordii
ENSRNOG00000003455	Zfp13	87	57.735	ENSETEG00000011456	-	89	59.942	Echinops_telfairi
ENSRNOG00000003455	Zfp13	82	78.743	ENSGGOG00000012036	ZNF205	60	79.042	Gorilla_gorilla
ENSRNOG00000003455	Zfp13	83	79.104	ENSMFAG00000031163	ZNF205	60	79.341	Macaca_fascicularis
ENSRNOG00000003455	Zfp13	83	79.104	ENSMMUG00000009487	ZNF205	60	79.341	Macaca_mulatta
ENSRNOG00000003455	Zfp13	88	79.330	ENSMNEG00000035657	ZNF205	60	79.042	Macaca_nemestrina
ENSRNOG00000003455	Zfp13	83	79.104	ENSMLEG00000029321	ZNF205	60	79.341	Mandrillus_leucophaeus
ENSRNOG00000003455	Zfp13	82	81.548	ENSMICG00000009089	ZNF205	60	81.548	Microcebus_murinus
ENSRNOG00000003455	Zfp13	82	87.842	ENSMOCG00000015466	Zfp13	64	87.842	Microtus_ochrogaster
ENSRNOG00000003455	Zfp13	88	48.179	ENSMLUG00000000013	-	59	50.000	Myotis_lucifugus
ENSRNOG00000003455	Zfp13	82	79.940	ENSNLEG00000009600	ZNF205	61	80.240	Nomascus_leucogenys
ENSRNOG00000003455	Zfp13	83	72.727	ENSOCUG00000010556	-	62	59.756	Oryctolagus_cuniculus
ENSRNOG00000003455	Zfp13	88	78.212	ENSOGAG00000003693	ZNF205	60	77.612	Otolemur_garnettii
ENSRNOG00000003455	Zfp13	82	79.042	ENSPPAG00000029679	ZNF205	60	79.341	Pan_paniscus
ENSRNOG00000003455	Zfp13	82	79.042	ENSPTRG00000046972	-	60	79.341	Pan_troglodytes
ENSRNOG00000003455	Zfp13	82	79.042	ENSPTRG00000007686	ZNF205	60	79.341	Pan_troglodytes
ENSRNOG00000003455	Zfp13	83	79.104	ENSPANG00000034385	ZNF205	60	79.341	Papio_anubis
ENSRNOG00000003455	Zfp13	82	79.940	ENSPPYG00000007034	ZNF205	60	79.940	Pongo_abelii
ENSRNOG00000003455	Zfp13	88	66.667	ENSPCAG00000016123	-	62	66.767	Procavia_capensis
ENSRNOG00000003455	Zfp13	82	80.299	ENSPCOG00000018796	ZNF205	61	80.299	Propithecus_coquereli
ENSRNOG00000003455	Zfp13	83	79.641	ENSRBIG00000044637	ZNF205	60	80.180	Rhinopithecus_bieti
ENSRNOG00000003455	Zfp13	83	79.341	ENSRROG00000018888	ZNF205	60	79.880	Rhinopithecus_roxellana
ENSRNOG00000003455	Zfp13	82	79.042	ENSSBOG00000026984	ZNF205	60	79.042	Saimiri_boliviensis_boliviensis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0010729	positive regulation of hydrogen peroxide biosynthetic process	-	IEA	Process
GO:0010729	positive regulation of hydrogen peroxide biosynthetic process	-	ISO	Process
GO:0016021	integral component of membrane	-	IEA	Component
GO:1901030	positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway	-	IEA	Process
GO:1901030	positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway	-	ISO	Process