EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000003600 (Gene tree)
Gene ID
360992
Gene Symbol
Pnpt1
Alias
LOC360992
Full Name
polyribonucleotide nucleotidyltransferase 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
31176 bases
Position
chr14:113530470-113561645
Accession
1307987
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000004919KH_1PF00013.292.2e-0811
ENSRNOP00000004919RNase_PHPF01138.214.7e-4012
ENSRNOP00000004919RNase_PHPF01138.214.7e-4022
ENSRNOP00000004919PNPasePF03726.143.5e-0811
ENSRNOP00000004919S1PF00575.232.8e-0611
ENSRNOP00000004919RNase_PH_CPF03725.157e-1711
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000004919-3441-ENSRNOP00000004919784 (aa)-G3V6G7
Gene Model
Click here to download ENSRNOG00000003600's gene model file
Pathways
Pathway IDPathway NameSource
rno03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000003600's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000003600Pnpt19991.816ENSG00000138035PNPT19791.963Homo_sapiens
ENSRNOG00000003600Pnpt19577.036ENSAPOG00000005581PNPT19877.222Acanthochromis_polyacanthus
ENSRNOG00000003600Pnpt19991.085ENSAMEG00000003772PNPT19791.689Ailuropoda_melanoleuca
ENSRNOG00000003600Pnpt19277.655ENSACIG00000010140PNPT19878.431Amphilophus_citrinellus
ENSRNOG00000003600Pnpt19776.601ENSAOCG00000020109PNPT19877.454Amphiprion_ocellaris
ENSRNOG00000003600Pnpt19575.774ENSAPEG00000002299PNPT19876.639Amphiprion_percula
ENSRNOG00000003600Pnpt19379.150ENSATEG00000011164PNPT19579.150Anabas_testudineus
ENSRNOG00000003600Pnpt19381.497ENSAPLG00000002885PNPT19982.069Anas_platyrhynchos
ENSRNOG00000003600Pnpt19978.310ENSACAG00000003692PNPT19581.217Anolis_carolinensis
ENSRNOG00000003600Pnpt19991.226ENSANAG00000023709PNPT19791.436Aotus_nancymaae
ENSRNOG00000003600Pnpt19776.863ENSACLG00000024267PNPT19877.586Astatotilapia_calliptera
ENSRNOG00000003600Pnpt19377.793ENSAMXG00000042321PNPT19978.670Astyanax_mexicanus
ENSRNOG00000003600Pnpt19989.651ENSBTAG00000008909PNPT19789.828Bos_taurus
ENSRNOG00000003600Pnpt19141.851WBGene00015266BE0003N10.19641.851Caenorhabditis_elegans
ENSRNOG00000003600Pnpt19991.097ENSCJAG00000009740PNPT19791.304Callithrix_jacchus
ENSRNOG00000003600Pnpt19986.026ENSCAFG00000002891PNPT19786.257Canis_familiaris
ENSRNOG00000003600Pnpt19991.462ENSCAFG00020026841PNPT19791.810Canis_lupus_dingo
ENSRNOG00000003600Pnpt19986.028ENSCHIG00000025034PNPT19686.129Capra_hircus
ENSRNOG00000003600Pnpt19991.484ENSTSYG00000006536PNPT19791.942Carlito_syrichta
ENSRNOG00000003600Pnpt19269.697ENSCAPG00000013300PNPT19970.914Cavia_aperea
ENSRNOG00000003600Pnpt19989.032ENSCPOG00000011008PNPT19789.432Cavia_porcellus
ENSRNOG00000003600Pnpt19990.581ENSCCAG00000037909PNPT19790.909Cebus_capucinus
ENSRNOG00000003600Pnpt19989.898ENSCATG00000031551PNPT19790.119Cercocebus_atys
ENSRNOG00000003600Pnpt19968.286ENSCATG00000036442-9968.865Cercocebus_atys
ENSRNOG00000003600Pnpt19990.452ENSCLAG00000006240PNPT19790.885Chinchilla_lanigera
ENSRNOG00000003600Pnpt19991.188ENSCSAG00000014324PNPT19791.447Chlorocebus_sabaeus
ENSRNOG00000003600Pnpt19379.863ENSCHOG00000007360PNPT110079.863Choloepus_hoffmanni
ENSRNOG00000003600Pnpt19980.552ENSCPBG00000020856PNPT19483.200Chrysemys_picta_bellii
ENSRNOG00000003600Pnpt19990.921ENSCANG00000034019PNPT19791.173Colobus_angolensis_palliatus
ENSRNOG00000003600Pnpt19971.022ENSCANG00000028159-9771.014Colobus_angolensis_palliatus
ENSRNOG00000003600Pnpt110092.911ENSCGRG00001012245Pnpt19794.125Cricetulus_griseus_chok1gshd
ENSRNOG00000003600Pnpt110093.495ENSCGRG00000007624Pnpt19894.003Cricetulus_griseus_crigri
ENSRNOG00000003600Pnpt19174.262ENSCSEG00000000809PNPT19974.262Cynoglossus_semilaevis
ENSRNOG00000003600Pnpt17780.072ENSCVAG00000010037PNPT19680.072Cyprinodon_variegatus
ENSRNOG00000003600Pnpt110090.051ENSDNOG00000046753PNPT19890.130Dasypus_novemcinctus
ENSRNOG00000003600Pnpt19990.815ENSDORG00000011409Pnpt19891.514Dipodomys_ordii
ENSRNOG00000003600Pnpt19356.793FBgn0039846PNPase9556.793Drosophila_melanogaster
ENSRNOG00000003600Pnpt110066.624ENSETEG00000001582-9866.884Echinops_telfairi
ENSRNOG00000003600Pnpt19155.278ENSEBUG00000010305PNPT19455.139Eptatretus_burgeri
ENSRNOG00000003600Pnpt19991.591ENSEASG00005001974PNPT19791.942Equus_asinus_asinus
ENSRNOG00000003600Pnpt19991.721ENSECAG00000020058PNPT19793.305Equus_caballus
ENSRNOG00000003600Pnpt19980.928ENSEEUG00000015610PNPT19781.486Erinaceus_europaeus
ENSRNOG00000003600Pnpt19676.478ENSELUG00000004795PNPT19777.200Esox_lucius
ENSRNOG00000003600Pnpt19991.203ENSFCAG00000013236PNPT19791.413Felis_catus
ENSRNOG00000003600Pnpt19380.605ENSFALG00000011214PNPT19881.311Ficedula_albicollis
ENSRNOG00000003600Pnpt19990.537ENSFDAG00000017446PNPT19989.831Fukomys_damarensis
ENSRNOG00000003600Pnpt19676.247ENSFHEG00000006495PNPT19878.285Fundulus_heteroclitus
ENSRNOG00000003600Pnpt19275.620ENSGMOG00000006805PNPT19575.620Gadus_morhua
ENSRNOG00000003600Pnpt19481.275ENSGALG00000043545PNPT19181.981Gallus_gallus
ENSRNOG00000003600Pnpt19576.831ENSGAFG00000019681PNPT19877.424Gambusia_affinis
ENSRNOG00000003600Pnpt19575.397ENSGACG00000010840PNPT19875.397Gasterosteus_aculeatus
ENSRNOG00000003600Pnpt19977.032ENSGGOG00000041496-9777.339Gorilla_gorilla
ENSRNOG00000003600Pnpt19991.560ENSGGOG00000006867PNPT19791.700Gorilla_gorilla
ENSRNOG00000003600Pnpt19776.601ENSHBUG00000013041PNPT19877.321Haplochromis_burtoni
ENSRNOG00000003600Pnpt19990.686ENSHGLG00000007480PNPT19791.017Heterocephalus_glaber_female
ENSRNOG00000003600Pnpt18982.092ENSHGLG00000010054-9086.265Heterocephalus_glaber_female
ENSRNOG00000003600Pnpt19990.686ENSHGLG00100010920PNPT19791.017Heterocephalus_glaber_male
ENSRNOG00000003600Pnpt19977.102ENSHGLG00100007397-9580.414Heterocephalus_glaber_male
ENSRNOG00000003600Pnpt19464.315ENSHCOG00000002817PNPT19864.966Hippocampus_comes
ENSRNOG00000003600Pnpt19378.219ENSIPUG00000014624PNPT19878.889Ictalurus_punctatus
ENSRNOG00000003600Pnpt19990.932ENSSTOG00000006304PNPT19691.667Ictidomys_tridecemlineatus
ENSRNOG00000003600Pnpt110090.561ENSJJAG00000019227Pnpt19891.253Jaculus_jaculus
ENSRNOG00000003600Pnpt19676.821ENSKMAG00000017389PNPT19876.821Kryptolebias_marmoratus
ENSRNOG00000003600Pnpt19477.853ENSLBEG00000027692PNPT19776.944Labrus_bergylta
ENSRNOG00000003600Pnpt18881.792ENSLACG00000011059PNPT19981.792Latimeria_chalumnae
ENSRNOG00000003600Pnpt19577.303ENSLOCG00000015375PNPT19377.943Lepisosteus_oculatus
ENSRNOG00000003600Pnpt19982.262ENSLAFG00000021462PNPT19782.330Loxodonta_africana
ENSRNOG00000003600Pnpt19991.049ENSMFAG00000001927PNPT19791.436Macaca_fascicularis
ENSRNOG00000003600Pnpt17993.541ENSMMUG00000007003PNPT19993.541Macaca_mulatta
ENSRNOG00000003600Pnpt19393.132ENSMNEG00000038589PNPT19993.065Macaca_nemestrina
ENSRNOG00000003600Pnpt19988.107ENSMLEG00000038706PNPT19788.274Mandrillus_leucophaeus
ENSRNOG00000003600Pnpt19967.263ENSMLEG00000028524-9667.062Mandrillus_leucophaeus
ENSRNOG00000003600Pnpt19970.992ENSMAMG00000021954PNPT19574.119Mastacembelus_armatus
ENSRNOG00000003600Pnpt19776.863ENSMZEG00005027363PNPT19877.586Maylandia_zebra
ENSRNOG00000003600Pnpt19381.011ENSMGAG00000001952PNPT19881.717Meleagris_gallopavo
ENSRNOG00000003600Pnpt110092.911ENSMAUG00000013652Pnpt19794.125Mesocricetus_auratus
ENSRNOG00000003600Pnpt19990.932ENSMICG00000009369PNPT19691.534Microcebus_murinus
ENSRNOG00000003600Pnpt19992.912ENSMOCG00000002820Pnpt19793.734Microtus_ochrogaster
ENSRNOG00000003600Pnpt19174.550ENSMMOG00000007480PNPT19874.965Mola_mola
ENSRNOG00000003600Pnpt19982.798ENSMODG00000001984PNPT19584.584Monodelphis_domestica
ENSRNOG00000003600Pnpt19676.882ENSMALG00000018484PNPT19876.718Monopterus_albus
ENSRNOG00000003600Pnpt110096.684MGP_CAROLIEiJ_G0016153Pnpt110096.684Mus_caroli
ENSRNOG00000003600Pnpt19896.349ENSMUSG00000020464Pnpt19796.570Mus_musculus
ENSRNOG00000003600Pnpt19896.364MGP_PahariEiJ_G0016737Pnpt19896.480Mus_pahari
ENSRNOG00000003600Pnpt110096.301MGP_SPRETEiJ_G0016996Pnpt110096.933Mus_spretus
ENSRNOG00000003600Pnpt19991.097ENSMPUG00000002353PNPT19791.436Mustela_putorius_furo
ENSRNOG00000003600Pnpt19990.206ENSMLUG00000003886PNPT19791.099Myotis_lucifugus
ENSRNOG00000003600Pnpt19993.273ENSNGAG00000020856-9793.404Nannospalax_galili
ENSRNOG00000003600Pnpt16975.875ENSNBRG00000012517PNPT18775.875Neolamprologus_brichardi
ENSRNOG00000003600Pnpt19988.747ENSNLEG00000009354PNPT19788.933Nomascus_leucogenys
ENSRNOG00000003600Pnpt19180.815ENSNLEG00000003327-9680.723Nomascus_leucogenys
ENSRNOG00000003600Pnpt19988.107ENSOPRG00000010232-9788.436Ochotona_princeps
ENSRNOG00000003600Pnpt19990.065ENSODEG00000012137PNPT19790.621Octodon_degus
ENSRNOG00000003600Pnpt19975.479ENSONIG00000000983PNPT19677.497Oreochromis_niloticus
ENSRNOG00000003600Pnpt19085.917ENSOANG00000011178PNPT19886.580Ornithorhynchus_anatinus
ENSRNOG00000003600Pnpt19991.495ENSOCUG00000006889PNPT19692.074Oryctolagus_cuniculus
ENSRNOG00000003600Pnpt19974.904ENSORLG00000004335PNPT19576.323Oryzias_latipes
ENSRNOG00000003600Pnpt19975.032ENSORLG00015018951PNPT19978.779Oryzias_latipes_hsok
ENSRNOG00000003600Pnpt19988.706ENSOGAG00000009840PNPT19789.239Otolemur_garnettii
ENSRNOG00000003600Pnpt19989.535ENSOARG00000002164PNPT19789.710Ovis_aries
ENSRNOG00000003600Pnpt19092.563ENSPPAG00000024705PNPT19792.480Pan_paniscus
ENSRNOG00000003600Pnpt19974.457ENSPPAG00000040514-9674.769Pan_paniscus
ENSRNOG00000003600Pnpt19991.721ENSPPRG00000001366PNPT19791.942Panthera_pardus
ENSRNOG00000003600Pnpt19991.850ENSPTIG00000014915PNPT19792.074Panthera_tigris_altaica
ENSRNOG00000003600Pnpt19974.386ENSPTRG00000051411-9874.308Pan_troglodytes
ENSRNOG00000003600Pnpt19991.560ENSPTRG00000011934PNPT19791.700Pan_troglodytes
ENSRNOG00000003600Pnpt19991.432ENSPANG00000022846PNPT19791.700Papio_anubis
ENSRNOG00000003600Pnpt19577.658ENSPKIG00000021612PNPT19975.800Paramormyrops_kingsleyae
ENSRNOG00000003600Pnpt19682.823ENSPSIG00000013120PNPT19783.065Pelodiscus_sinensis
ENSRNOG00000003600Pnpt110092.630ENSPEMG00000004284Pnpt19793.430Peromyscus_maniculatus_bairdii
ENSRNOG00000003600Pnpt19273.554ENSPMAG00000008932PNPT19873.554Petromyzon_marinus
ENSRNOG00000003600Pnpt19983.676ENSPCIG00000010236PNPT19684.544Phascolarctos_cinereus
ENSRNOG00000003600Pnpt19576.964ENSPFOG00000010229PNPT19876.964Poecilia_formosa
ENSRNOG00000003600Pnpt19577.097ENSPLAG00000009008PNPT19877.097Poecilia_latipinna
ENSRNOG00000003600Pnpt19676.247ENSPMEG00000004192PNPT19878.644Poecilia_mexicana
ENSRNOG00000003600Pnpt19277.473ENSPREG00000003072PNPT19878.243Poecilia_reticulata
ENSRNOG00000003600Pnpt19991.049ENSPPYG00000012399PNPT19791.173Pongo_abelii
ENSRNOG00000003600Pnpt19281.137ENSPCAG00000010806PNPT19981.137Procavia_capensis
ENSRNOG00000003600Pnpt19280.663ENSPCOG00000015664PNPT19980.587Propithecus_coquereli
ENSRNOG00000003600Pnpt17986.215ENSPVAG00000005379PNPT18677.662Pteropus_vampyrus
ENSRNOG00000003600Pnpt19376.786ENSPNYG00000000363PNPT19577.361Pundamilia_nyererei
ENSRNOG00000003600Pnpt19580.267ENSPNAG00000010891PNPT19680.863Pygocentrus_nattereri
ENSRNOG00000003600Pnpt19991.049ENSRBIG00000043016PNPT19791.304Rhinopithecus_bieti
ENSRNOG00000003600Pnpt19990.921ENSRROG00000040537PNPT19791.173Rhinopithecus_roxellana
ENSRNOG00000003600Pnpt19988.903ENSSBOG00000032574PNPT19993.237Saimiri_boliviensis_boliviensis
ENSRNOG00000003600Pnpt16287.064ENSSHAG00000014040PNPT19887.216Sarcophilus_harrisii
ENSRNOG00000003600Pnpt19270.248ENSSFOG00015017596PNPT19470.793Scleropages_formosus
ENSRNOG00000003600Pnpt19576.146ENSSMAG00000018471PNPT19876.250Scophthalmus_maximus
ENSRNOG00000003600Pnpt19577.793ENSSDUG00000018584PNPT19578.474Seriola_dumerili
ENSRNOG00000003600Pnpt19478.726ENSSLDG00000023385PNPT19877.684Seriola_lalandi_dorsalis
ENSRNOG00000003600Pnpt18783.501ENSSARG00000012819PNPT18583.501Sorex_araneus
ENSRNOG00000003600Pnpt19977.679ENSSPUG00000011785PNPT19679.122Sphenodon_punctatus
ENSRNOG00000003600Pnpt19674.541ENSSPAG00000016880PNPT19875.451Stegastes_partitus
ENSRNOG00000003600Pnpt19990.815ENSSSCG00000031882PNPT19791.149Sus_scrofa
ENSRNOG00000003600Pnpt19380.796ENSTGUG00000006908PNPT19881.363Taeniopygia_guttata
ENSRNOG00000003600Pnpt19575.267ENSTRUG00000005495PNPT19775.066Takifugu_rubripes
ENSRNOG00000003600Pnpt19376.849ENSTNIG00000007460PNPT19976.630Tetraodon_nigroviridis
ENSRNOG00000003600Pnpt19960.746ENSTBEG00000010788PNPT19760.738Tupaia_belangeri
ENSRNOG00000003600Pnpt19392.318ENSTTRG00000000029PNPT19992.510Tursiops_truncatus
ENSRNOG00000003600Pnpt19292.722ENSUAMG00000017133PNPT19992.493Ursus_americanus
ENSRNOG00000003600Pnpt19991.332ENSUMAG00000018844PNPT19591.678Ursus_maritimus
ENSRNOG00000003600Pnpt19982.171ENSVPAG00000007097PNPT19682.299Vicugna_pacos
ENSRNOG00000003600Pnpt19991.203ENSVVUG00000010034PNPT19791.546Vulpes_vulpes
ENSRNOG00000003600Pnpt19479.595ENSXETG00000006075pnpt19380.411Xenopus_tropicalis
ENSRNOG00000003600Pnpt19278.472ENSXCOG00000013381PNPT19778.472Xiphophorus_couchianus
ENSRNOG00000003600Pnpt19576.831ENSXMAG00000016907PNPT19878.750Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:00001753'-5'-exoribonuclease activity21873635.IBAFunction
GO:00001753'-5'-exoribonuclease activity-ISOFunction
GO:0000957mitochondrial RNA catabolic process21873635.IBAProcess
GO:0000957mitochondrial RNA catabolic process-ISOProcess
GO:0000958mitochondrial mRNA catabolic process21873635.IBAProcess
GO:0000958mitochondrial mRNA catabolic process-ISOProcess
GO:0000962positive regulation of mitochondrial RNA catabolic process-IEAProcess
GO:0000962positive regulation of mitochondrial RNA catabolic process-ISOProcess
GO:0000963mitochondrial RNA processing21873635.IBAProcess
GO:0000964mitochondrial RNA 5'-end processing-IEAProcess
GO:0000964mitochondrial RNA 5'-end processing-ISOProcess
GO:0000965mitochondrial RNA 3'-end processing21873635.IBAProcess
GO:0000965mitochondrial RNA 3'-end processing-ISOProcess
GO:0004654polyribonucleotide nucleotidyltransferase activity21873635.IBAFunction
GO:0004654polyribonucleotide nucleotidyltransferase activity7295810.IDAFunction
GO:0004654polyribonucleotide nucleotidyltransferase activity-ISOFunction
GO:0005634nucleus7295810.IDAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion-ISOComponent
GO:0005758mitochondrial intermembrane space-IEAComponent
GO:0005758mitochondrial intermembrane space-ISOComponent
GO:0005789endoplasmic reticulum membrane191106.IDAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0005829cytosol-ISOComponent
GO:0006401RNA catabolic process21873635.IBAProcess
GO:0006401RNA catabolic process-ISOProcess
GO:0006402mRNA catabolic process-ISOProcess
GO:0008266poly(U) RNA binding-IEAFunction
GO:0008266poly(U) RNA binding-ISOFunction
GO:0034046poly(G) binding-IEAFunction
GO:0034046poly(G) binding-ISOFunction
GO:0034599cellular response to oxidative stress-IEAProcess
GO:0034599cellular response to oxidative stress-ISOProcess
GO:0035198miRNA binding-IEAFunction
GO:0035198miRNA binding-ISOFunction
GO:0035458cellular response to interferon-beta-IEAProcess
GO:0035458cellular response to interferon-beta-ISOProcess
GO:0035927RNA import into mitochondrion-ISOProcess
GO:0035928rRNA import into mitochondrion-IEAProcess
GO:0035928rRNA import into mitochondrion-ISOProcess
GO:0042788polysomal ribosome191106.IDAComponent
GO:0043457regulation of cellular respiration-IEAProcess
GO:0043457regulation of cellular respiration-ISOProcess
GO:0043631RNA polyadenylation-ISOProcess
GO:0045025mitochondrial degradosome-IEAComponent
GO:0045025mitochondrial degradosome-ISOComponent
GO:0045926negative regulation of growth-IEAProcess
GO:0045926negative regulation of growth-ISOProcess
GO:0051260protein homooligomerization-ISOProcess
GO:0051591response to cAMP189502.IEPProcess
GO:0060416response to growth hormone7470604.IEPProcess
GO:0061014positive regulation of mRNA catabolic process737213.IDAProcess
GO:0061014positive regulation of mRNA catabolic process-ISOProcess
GO:0070207protein homotrimerization-IEAProcess
GO:0070207protein homotrimerization-ISOProcess
GO:0070584mitochondrion morphogenesis-IEAProcess
GO:0070584mitochondrion morphogenesis-ISOProcess
GO:0071042nuclear polyadenylation-dependent mRNA catabolic process-IEAProcess
GO:0071042nuclear polyadenylation-dependent mRNA catabolic process-ISOProcess
GO:0071850mitotic cell cycle arrest-IEAProcess
GO:0071850mitotic cell cycle arrest-ISOProcess
GO:0090503RNA phosphodiester bond hydrolysis, exonucleolytic-IEAProcess
GO:0097222mitochondrial mRNA polyadenylation-IEAProcess
GO:0097222mitochondrial mRNA polyadenylation-ISOProcess
GO:0097421liver regeneration191106.IEPProcess
GO:2000627positive regulation of miRNA catabolic process-IEAProcess
GO:2000627positive regulation of miRNA catabolic process-ISOProcess
GO:2000772regulation of cellular senescence-IEAProcess
GO:2000772regulation of cellular senescence-ISOProcess

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