EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000003762 (Gene tree)
Gene ID: 317575
Gene Symbol: Smarca1
Alias: LOC317575|RGD1561046
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 71395 bases
Position: chrX:134647703-134719097
Accession: 1561046
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060122	ResIII	PF04851.15	1.2e-11	1	1
ENSRNOP00000060122	DEAD	PF00270.29	7e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068478	-	3948	XM_006257525	ENSRNOP00000060122	1057 (aa)	XP_006257587	D3ZIE5

Gene Model

Click here to download ENSRNOG00000003762's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000003762's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000003762	Smarca1	51	46.614	ENSRNOG00000047104	Hells	64	46.614
ENSRNOG00000003762	Smarca1	51	46.614	ENSRNOG00000047692	LOC100911660	65	46.614
ENSRNOG00000003762	Smarca1	93	84.451	ENSRNOG00000018149	Smarca5	98	84.608
ENSRNOG00000003762	Smarca1	54	44.082	ENSRNOG00000017669	Chd1l	62	44.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000003762	Smarca1	100	96.408	ENSG00000102038	SMARCA1	100	96.408	Homo_sapiens
ENSRNOG00000003762	Smarca1	92	82.480	ENSAPOG00000016035	smarca5	98	83.151	Acanthochromis_polyacanthus
ENSRNOG00000003762	Smarca1	100	94.486	ENSAMEG00000015218	SMARCA1	100	94.673	Ailuropoda_melanoleuca
ENSRNOG00000003762	Smarca1	85	82.946	ENSACIG00000016982	smarca5	99	83.036	Amphilophus_citrinellus
ENSRNOG00000003762	Smarca1	92	82.480	ENSAOCG00000015578	smarca5	95	81.515	Amphiprion_ocellaris
ENSRNOG00000003762	Smarca1	92	82.480	ENSAPEG00000011117	smarca5	99	83.137	Amphiprion_percula
ENSRNOG00000003762	Smarca1	93	82.179	ENSATEG00000012894	smarca5	97	80.597	Anabas_testudineus
ENSRNOG00000003762	Smarca1	93	91.548	ENSAPLG00000013149	SMARCA1	100	91.548	Anas_platyrhynchos
ENSRNOG00000003762	Smarca1	97	88.749	ENSACAG00000011376	SMARCA1	95	90.509	Anolis_carolinensis
ENSRNOG00000003762	Smarca1	98	91.522	ENSANAG00000023098	SMARCA1	100	91.399	Aotus_nancymaae
ENSRNOG00000003762	Smarca1	96	80.177	ENSACLG00000025356	smarca5	95	82.056	Astatotilapia_calliptera
ENSRNOG00000003762	Smarca1	97	79.922	ENSAMXG00000005709	smarca5	94	82.974	Astyanax_mexicanus
ENSRNOG00000003762	Smarca1	88	87.527	ENSAMXG00000011227	smarca1	99	89.091	Astyanax_mexicanus
ENSRNOG00000003762	Smarca1	99	95.279	ENSBTAG00000002292	SMARCA1	99	94.286	Bos_taurus
ENSRNOG00000003762	Smarca1	93	62.828	WBGene00002169	isw-1	97	62.828	Caenorhabditis_elegans
ENSRNOG00000003762	Smarca1	100	96.219	ENSCJAG00000002868	SMARCA1	100	96.219	Callithrix_jacchus
ENSRNOG00000003762	Smarca1	100	86.698	ENSCAFG00000018673	SMARCA1	100	86.884	Canis_familiaris
ENSRNOG00000003762	Smarca1	100	96.503	ENSCAFG00020001751	SMARCA1	100	96.503	Canis_lupus_dingo
ENSRNOG00000003762	Smarca1	100	95.476	ENSCHIG00000009837	SMARCA1	100	95.570	Capra_hircus
ENSRNOG00000003762	Smarca1	95	96.700	ENSTSYG00000004240	SMARCA1	98	96.029	Carlito_syrichta
ENSRNOG00000003762	Smarca1	100	93.985	ENSCPOG00000013601	SMARCA1	100	94.079	Cavia_porcellus
ENSRNOG00000003762	Smarca1	98	93.353	ENSCCAG00000030817	SMARCA1	100	93.195	Cebus_capucinus
ENSRNOG00000003762	Smarca1	100	95.327	ENSCATG00000015921	SMARCA1	99	96.329	Cercocebus_atys
ENSRNOG00000003762	Smarca1	98	95.376	ENSCLAG00000002171	SMARCA1	100	95.274	Chinchilla_lanigera
ENSRNOG00000003762	Smarca1	100	96.408	ENSCSAG00000008460	SMARCA1	100	96.408	Chlorocebus_sabaeus
ENSRNOG00000003762	Smarca1	95	91.409	ENSCPBG00000001146	SMARCA1	94	91.767	Chrysemys_picta_bellii
ENSRNOG00000003762	Smarca1	93	72.048	ENSCING00000004110	swi/snf	98	72.048	Ciona_intestinalis
ENSRNOG00000003762	Smarca1	92	72.382	ENSCSAVG00000004620	-	100	73.385	Ciona_savignyi
ENSRNOG00000003762	Smarca1	100	96.314	ENSCANG00000007183	SMARCA1	100	96.314	Colobus_angolensis_palliatus
ENSRNOG00000003762	Smarca1	100	97.167	ENSCGRG00001010776	Smarca1	100	97.167	Cricetulus_griseus_chok1gshd
ENSRNOG00000003762	Smarca1	92	96.640	ENSCGRG00000015301	Smarca1	98	96.640	Cricetulus_griseus_crigri
ENSRNOG00000003762	Smarca1	92	82.480	ENSCSEG00000000328	smarca5	95	81.717	Cynoglossus_semilaevis
ENSRNOG00000003762	Smarca1	93	82.077	ENSCVAG00000008668	smarca5	99	82.686	Cyprinodon_variegatus
ENSRNOG00000003762	Smarca1	94	84.501	ENSDARG00000012776	smarca1	98	84.501	Danio_rerio
ENSRNOG00000003762	Smarca1	94	81.598	ENSDARG00000052348	smarca5	95	81.598	Danio_rerio
ENSRNOG00000003762	Smarca1	98	94.493	ENSDNOG00000004315	SMARCA1	99	94.493	Dasypus_novemcinctus
ENSRNOG00000003762	Smarca1	98	95.261	ENSDORG00000009270	Smarca1	99	95.261	Dipodomys_ordii
ENSRNOG00000003762	Smarca1	92	72.727	FBgn0011604	Iswi	98	71.823	Drosophila_melanogaster
ENSRNOG00000003762	Smarca1	77	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSRNOG00000003762	Smarca1	93	80.184	ENSEBUG00000001239	smarca5	96	80.184	Eptatretus_burgeri
ENSRNOG00000003762	Smarca1	94	92.277	ENSEASG00005008218	SMARCA1	100	92.727	Equus_asinus_asinus
ENSRNOG00000003762	Smarca1	100	96.418	ENSECAG00000012106	SMARCA1	100	96.418	Equus_caballus
ENSRNOG00000003762	Smarca1	75	97.351	ENSEEUG00000014927	SMARCA1	82	97.351	Erinaceus_europaeus
ENSRNOG00000003762	Smarca1	96	85.039	ENSELUG00000010515	smarca1	98	86.306	Esox_lucius
ENSRNOG00000003762	Smarca1	100	96.500	ENSFCAG00000018496	SMARCA1	100	96.500	Felis_catus
ENSRNOG00000003762	Smarca1	86	91.785	ENSFALG00000000209	SMARCA1	98	91.886	Ficedula_albicollis
ENSRNOG00000003762	Smarca1	93	95.257	ENSFDAG00000009818	SMARCA1	97	95.257	Fukomys_damarensis
ENSRNOG00000003762	Smarca1	93	82.383	ENSFHEG00000007687	smarca5	94	81.818	Fundulus_heteroclitus
ENSRNOG00000003762	Smarca1	93	89.707	ENSGALG00000008431	SMARCA1	97	91.095	Gallus_gallus
ENSRNOG00000003762	Smarca1	93	82.179	ENSGAFG00000017731	smarca5	95	81.616	Gambusia_affinis
ENSRNOG00000003762	Smarca1	92	92.181	ENSGAGG00000023575	SMARCA1	100	92.181	Gopherus_agassizii
ENSRNOG00000003762	Smarca1	69	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSRNOG00000003762	Smarca1	100	94.707	ENSHGLG00000003080	SMARCA1	100	94.896	Heterocephalus_glaber_female
ENSRNOG00000003762	Smarca1	94	95.105	ENSHGLG00100001102	SMARCA1	100	95.105	Heterocephalus_glaber_male
ENSRNOG00000003762	Smarca1	92	82.515	ENSHCOG00000005458	smarca5	97	80.796	Hippocampus_comes
ENSRNOG00000003762	Smarca1	95	84.440	ENSIPUG00000016905	Smarca1	99	86.108	Ictalurus_punctatus
ENSRNOG00000003762	Smarca1	92	82.462	ENSIPUG00000005229	SMARCA5	96	82.462	Ictalurus_punctatus
ENSRNOG00000003762	Smarca1	100	96.030	ENSSTOG00000014524	SMARCA1	100	96.030	Ictidomys_tridecemlineatus
ENSRNOG00000003762	Smarca1	100	95.669	ENSJJAG00000002593	Smarca1	100	95.669	Jaculus_jaculus
ENSRNOG00000003762	Smarca1	92	82.618	ENSKMAG00000003777	smarca5	95	81.919	Kryptolebias_marmoratus
ENSRNOG00000003762	Smarca1	88	82.922	ENSLBEG00000013295	SMARCA1	100	84.197	Labrus_bergylta
ENSRNOG00000003762	Smarca1	94	81.717	ENSLBEG00000018112	smarca5	95	81.717	Labrus_bergylta
ENSRNOG00000003762	Smarca1	96	88.055	ENSLACG00000016697	SMARCA1	99	88.845	Latimeria_chalumnae
ENSRNOG00000003762	Smarca1	94	87.964	ENSLOCG00000014591	smarca1	97	87.964	Lepisosteus_oculatus
ENSRNOG00000003762	Smarca1	95	95.427	ENSLAFG00000000896	SMARCA1	100	95.427	Loxodonta_africana
ENSRNOG00000003762	Smarca1	100	96.408	ENSMFAG00000002117	SMARCA1	99	96.329	Macaca_fascicularis
ENSRNOG00000003762	Smarca1	100	95.327	ENSMMUG00000008818	SMARCA1	99	96.963	Macaca_mulatta
ENSRNOG00000003762	Smarca1	100	95.327	ENSMNEG00000041768	SMARCA1	99	96.329	Macaca_nemestrina
ENSRNOG00000003762	Smarca1	100	96.314	ENSMLEG00000043198	SMARCA1	100	96.314	Mandrillus_leucophaeus
ENSRNOG00000003762	Smarca1	93	82.383	ENSMAMG00000014294	smarca5	95	81.818	Mastacembelus_armatus
ENSRNOG00000003762	Smarca1	96	80.177	ENSMZEG00005009369	smarca5	95	82.056	Maylandia_zebra
ENSRNOG00000003762	Smarca1	95	89.458	ENSMGAG00000007042	SMARCA1	100	89.458	Meleagris_gallopavo
ENSRNOG00000003762	Smarca1	98	97.308	ENSMAUG00000008133	Smarca1	99	97.308	Mesocricetus_auratus
ENSRNOG00000003762	Smarca1	98	96.143	ENSMICG00000015768	SMARCA1	100	95.743	Microcebus_murinus
ENSRNOG00000003762	Smarca1	100	97.272	ENSMOCG00000009464	Smarca1	100	97.272	Microtus_ochrogaster
ENSRNOG00000003762	Smarca1	94	80.000	ENSMMOG00000005547	smarca5	99	80.000	Mola_mola
ENSRNOG00000003762	Smarca1	98	88.760	ENSMODG00000013187	-	99	88.760	Monodelphis_domestica
ENSRNOG00000003762	Smarca1	92	82.106	ENSMALG00000002081	smarca5	97	81.687	Monopterus_albus
ENSRNOG00000003762	Smarca1	100	98.117	MGP_CAROLIEiJ_G0033034	Smarca1	100	98.117	Mus_caroli
ENSRNOG00000003762	Smarca1	100	98.211	ENSMUSG00000031099	Smarca1	100	98.211	Mus_musculus
ENSRNOG00000003762	Smarca1	100	98.211	MGP_PahariEiJ_G0031579	Smarca1	100	98.211	Mus_pahari
ENSRNOG00000003762	Smarca1	100	98.305	MGP_SPRETEiJ_G0034192	Smarca1	100	98.305	Mus_spretus
ENSRNOG00000003762	Smarca1	100	95.047	ENSMPUG00000017423	SMARCA1	95	95.234	Mustela_putorius_furo
ENSRNOG00000003762	Smarca1	98	93.916	ENSMLUG00000029614	SMARCA1	100	93.464	Myotis_lucifugus
ENSRNOG00000003762	Smarca1	98	96.731	ENSNGAG00000006492	Smarca1	99	96.731	Nannospalax_galili
ENSRNOG00000003762	Smarca1	93	82.587	ENSNBRG00000004463	smarca5	99	82.157	Neolamprologus_brichardi
ENSRNOG00000003762	Smarca1	98	94.762	ENSNLEG00000015179	SMARCA1	100	94.579	Nomascus_leucogenys
ENSRNOG00000003762	Smarca1	89	81.329	ENSMEUG00000008819	SMARCA1	99	81.329	Notamacropus_eugenii
ENSRNOG00000003762	Smarca1	96	94.250	ENSODEG00000012163	SMARCA1	99	93.977	Octodon_degus
ENSRNOG00000003762	Smarca1	96	80.275	ENSONIG00000009993	smarca5	95	82.157	Oreochromis_niloticus
ENSRNOG00000003762	Smarca1	92	92.284	ENSOANG00000002862	SMARCA1	100	92.284	Ornithorhynchus_anatinus
ENSRNOG00000003762	Smarca1	100	93.851	ENSOCUG00000001047	SMARCA1	100	93.851	Oryctolagus_cuniculus
ENSRNOG00000003762	Smarca1	92	82.515	ENSORLG00000021998	smarca5	96	80.796	Oryzias_latipes
ENSRNOG00000003762	Smarca1	92	82.618	ENSORLG00020017679	smarca5	97	80.896	Oryzias_latipes_hni
ENSRNOG00000003762	Smarca1	92	82.515	ENSORLG00015017210	smarca5	97	80.697	Oryzias_latipes_hsok
ENSRNOG00000003762	Smarca1	92	82.515	ENSOMEG00000000086	smarca5	97	80.697	Oryzias_melastigma
ENSRNOG00000003762	Smarca1	98	94.365	ENSOGAG00000004399	SMARCA1	99	94.556	Otolemur_garnettii
ENSRNOG00000003762	Smarca1	95	95.854	ENSOARG00000014638	SMARCA1	100	97.449	Ovis_aries
ENSRNOG00000003762	Smarca1	100	96.408	ENSPPAG00000034647	SMARCA1	100	96.408	Pan_paniscus
ENSRNOG00000003762	Smarca1	100	96.689	ENSPPRG00000008929	SMARCA1	100	96.689	Panthera_pardus
ENSRNOG00000003762	Smarca1	95	95.084	ENSPTIG00000000915	SMARCA1	98	95.084	Panthera_tigris_altaica
ENSRNOG00000003762	Smarca1	100	96.408	ENSPTRG00000049876	SMARCA1	99	96.329	Pan_troglodytes
ENSRNOG00000003762	Smarca1	100	96.408	ENSPANG00000003871	SMARCA1	100	96.408	Papio_anubis
ENSRNOG00000003762	Smarca1	89	86.287	ENSPKIG00000013411	smarca1	98	86.114	Paramormyrops_kingsleyae
ENSRNOG00000003762	Smarca1	95	90.128	ENSPSIG00000010101	SMARCA1	100	91.872	Pelodiscus_sinensis
ENSRNOG00000003762	Smarca1	98	98.077	ENSPEMG00000017503	Smarca1	99	98.077	Peromyscus_maniculatus_bairdii
ENSRNOG00000003762	Smarca1	95	91.109	ENSPCIG00000015460	SMARCA1	98	91.109	Phascolarctos_cinereus
ENSRNOG00000003762	Smarca1	92	82.413	ENSPFOG00000007649	smarca5	95	81.616	Poecilia_formosa
ENSRNOG00000003762	Smarca1	92	82.413	ENSPLAG00000003363	smarca5	95	81.616	Poecilia_latipinna
ENSRNOG00000003762	Smarca1	92	82.311	ENSPMEG00000019849	smarca5	95	81.515	Poecilia_mexicana
ENSRNOG00000003762	Smarca1	92	82.311	ENSPREG00000023250	smarca5	95	81.515	Poecilia_reticulata
ENSRNOG00000003762	Smarca1	98	93.834	ENSPPYG00000020703	SMARCA1	100	93.667	Pongo_abelii
ENSRNOG00000003762	Smarca1	76	89.189	ENSPCOG00000020722	SMARCA1	94	91.483	Propithecus_coquereli
ENSRNOG00000003762	Smarca1	90	94.337	ENSPVAG00000003805	SMARCA1	94	94.337	Pteropus_vampyrus
ENSRNOG00000003762	Smarca1	56	83.014	ENSPNYG00000012299	smarca5	92	81.867	Pundamilia_nyererei
ENSRNOG00000003762	Smarca1	100	96.314	ENSRROG00000034167	SMARCA1	100	96.314	Rhinopithecus_roxellana
ENSRNOG00000003762	Smarca1	93	97.551	ENSSBOG00000020641	SMARCA1	100	97.551	Saimiri_boliviensis_boliviensis
ENSRNOG00000003762	Smarca1	92	86.023	ENSSHAG00000013518	SMARCA1	99	86.023	Sarcophilus_harrisii
ENSRNOG00000003762	Smarca1	96	80.394	ENSSFOG00015016794	smarca5	100	82.680	Scleropages_formosus
ENSRNOG00000003762	Smarca1	96	85.503	ENSSFOG00015009043	smarca1	98	86.587	Scleropages_formosus
ENSRNOG00000003762	Smarca1	93	81.560	ENSSMAG00000004801	smarca5	95	81.560	Scophthalmus_maximus
ENSRNOG00000003762	Smarca1	93	82.179	ENSSDUG00000020690	smarca5	96	81.616	Seriola_dumerili
ENSRNOG00000003762	Smarca1	93	82.179	ENSSLDG00000025190	smarca5	96	81.616	Seriola_lalandi_dorsalis
ENSRNOG00000003762	Smarca1	85	87.706	ENSSARG00000000842	SMARCA1	92	87.706	Sorex_araneus
ENSRNOG00000003762	Smarca1	92	90.686	ENSSPUG00000000590	SMARCA1	95	90.593	Sphenodon_punctatus
ENSRNOG00000003762	Smarca1	93	82.077	ENSSPAG00000002894	smarca5	97	83.151	Stegastes_partitus
ENSRNOG00000003762	Smarca1	98	96.050	ENSSSCG00000012649	SMARCA1	99	96.050	Sus_scrofa
ENSRNOG00000003762	Smarca1	93	91.344	ENSTGUG00000003899	-	100	91.344	Taeniopygia_guttata
ENSRNOG00000003762	Smarca1	93	82.688	ENSTRUG00000014094	smarca5	95	82.121	Takifugu_rubripes
ENSRNOG00000003762	Smarca1	92	82.275	ENSTNIG00000017717	smarca5	94	81.414	Tetraodon_nigroviridis
ENSRNOG00000003762	Smarca1	92	88.675	ENSTBEG00000014973	SMARCA1	99	88.675	Tupaia_belangeri
ENSRNOG00000003762	Smarca1	92	92.675	ENSTTRG00000006168	SMARCA1	99	92.675	Tursiops_truncatus
ENSRNOG00000003762	Smarca1	100	95.841	ENSUAMG00000020201	SMARCA1	100	96.030	Ursus_americanus
ENSRNOG00000003762	Smarca1	95	90.954	ENSUMAG00000004073	SMARCA1	99	96.897	Ursus_maritimus
ENSRNOG00000003762	Smarca1	72	97.585	ENSVPAG00000010492	-	79	97.585	Vicugna_pacos
ENSRNOG00000003762	Smarca1	95	97.200	ENSVVUG00000008878	SMARCA1	99	97.492	Vulpes_vulpes
ENSRNOG00000003762	Smarca1	94	88.153	ENSXETG00000001526	smarca1	99	88.153	Xenopus_tropicalis
ENSRNOG00000003762	Smarca1	93	82.077	ENSXCOG00000011170	smarca5	98	81.515	Xiphophorus_couchianus
ENSRNOG00000003762	Smarca1	93	82.077	ENSXMAG00000009678	smarca5	97	83.553	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0007420	brain development	-	IEA	Process
GO:0007420	brain development	-	ISO	Process
GO:0008094	DNA-dependent ATPase activity	-	ISO	Function
GO:0008134	transcription factor binding	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0016589	NURF complex	-	IEA	Component
GO:0016589	NURF complex	-	ISO	Component
GO:0016887	ATPase activity	-	IEA	Function
GO:0030182	neuron differentiation	-	IEA	Process
GO:0030182	neuron differentiation	-	ISO	Process
GO:0031491	nucleosome binding	-	IEA	Function
GO:0036310	annealing helicase activity	-	ISO	Function
GO:0043044	ATP-dependent chromatin remodeling	-	IEA	Process
GO:0043044	ATP-dependent chromatin remodeling	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0070615	nucleosome-dependent ATPase activity	-	ISO	Function
GO:0090537	CERF complex	-	ISO	Component
GO:2000177	regulation of neural precursor cell proliferation	-	IEA	Process
GO:2000177	regulation of neural precursor cell proliferation	-	ISO	Process