EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000003988 (Gene tree)
Gene ID: 298859
Gene Symbol: Dnajc27
Alias: Rbj
Full Name: DnaJ heat shock protein family (Hsp40) member C27
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 29766 bases
Position: chr6:28515025-28544790
Accession: 1564414
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000005317	MMR_HSR1	PF01926.23	2e-05	1	1
ENSRNOP00000071788	MMR_HSR1	PF01926.23	2e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000005317	-	4578	-	ENSRNOP00000005317	273 (aa)	-	Q6IML7
ENSRNOT00000081141	-	3970	-	ENSRNOP00000071788	273 (aa)	-	Q6IML7
ENSRNOT00000088033	-	1140	-	ENSRNOP00000073490	379 (aa)	-	Q6QI28

Gene Model

Click here to download ENSRNOG00000003988's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000003988's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000003988	Dnajc27	56	33.117	ENSRNOG00000006698	Rab33a	63	33.117
ENSRNOG00000003988	Dnajc27	58	33.544	ENSRNOG00000005963	Rab2a	74	33.544
ENSRNOG00000003988	Dnajc27	68	30.270	ENSRNOG00000016733	Rab13	88	30.270
ENSRNOG00000003988	Dnajc27	58	31.447	ENSRNOG00000005762	Rab22a	79	31.447
ENSRNOG00000003988	Dnajc27	63	32.000	ENSRNOG00000018901	Rab14	79	32.000
ENSRNOG00000003988	Dnajc27	59	31.250	ENSRNOG00000012629	Rab23	65	31.250
ENSRNOG00000003988	Dnajc27	60	30.357	ENSRNOG00000030443	Rab9a	81	30.357
ENSRNOG00000003988	Dnajc27	60	36.145	ENSRNOG00000012247	Rab7a	87	36.145
ENSRNOG00000003988	Dnajc27	58	32.278	ENSRNOG00000012488	Rab2b	71	32.278
ENSRNOG00000003988	Dnajc27	61	34.731	ENSRNOG00000018972	Rab18	79	34.731
ENSRNOG00000003988	Dnajc27	60	30.303	ENSRNOG00000011302	Rab11a	74	30.303
ENSRNOG00000003988	Dnajc27	60	31.515	ENSRNOG00000047960	Rab9b	81	31.515
ENSRNOG00000003988	Dnajc27	63	34.857	ENSRNOG00000042189	Rab31	87	34.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000003988	Dnajc27	100	93.040	ENSG00000115137	DNAJC27	100	93.040	Homo_sapiens
ENSRNOG00000003988	Dnajc27	100	82.418	ENSAPOG00000020278	dnajc27	100	82.418	Acanthochromis_polyacanthus
ENSRNOG00000003988	Dnajc27	100	93.431	ENSAMEG00000002554	DNAJC27	100	93.431	Ailuropoda_melanoleuca
ENSRNOG00000003988	Dnajc27	99	80.952	ENSACIG00000009139	dnajc27	100	80.952	Amphilophus_citrinellus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSAOCG00000006604	dnajc27	100	82.418	Amphiprion_ocellaris
ENSRNOG00000003988	Dnajc27	100	82.418	ENSAPEG00000009586	dnajc27	100	82.418	Amphiprion_percula
ENSRNOG00000003988	Dnajc27	100	82.418	ENSATEG00000008796	dnajc27	100	82.418	Anabas_testudineus
ENSRNOG00000003988	Dnajc27	98	90.637	ENSACAG00000010248	DNAJC27	99	90.637	Anolis_carolinensis
ENSRNOG00000003988	Dnajc27	100	93.407	ENSANAG00000032274	DNAJC27	100	93.407	Aotus_nancymaae
ENSRNOG00000003988	Dnajc27	100	82.418	ENSACLG00000004019	dnajc27	100	82.418	Astatotilapia_calliptera
ENSRNOG00000003988	Dnajc27	100	82.418	ENSAMXG00000041488	dnajc27	99	82.418	Astyanax_mexicanus
ENSRNOG00000003988	Dnajc27	100	92.674	ENSBTAG00000018239	DNAJC27	100	92.674	Bos_taurus
ENSRNOG00000003988	Dnajc27	100	93.407	ENSCJAG00000008094	DNAJC27	100	93.407	Callithrix_jacchus
ENSRNOG00000003988	Dnajc27	100	92.701	ENSCAFG00000004098	DNAJC27	100	92.701	Canis_familiaris
ENSRNOG00000003988	Dnajc27	100	93.407	ENSCAFG00020025277	DNAJC27	100	93.407	Canis_lupus_dingo
ENSRNOG00000003988	Dnajc27	100	92.308	ENSCHIG00000013821	DNAJC27	100	92.308	Capra_hircus
ENSRNOG00000003988	Dnajc27	100	92.674	ENSTSYG00000014096	DNAJC27	99	94.318	Carlito_syrichta
ENSRNOG00000003988	Dnajc27	100	91.941	ENSCPOG00000006843	DNAJC27	100	91.941	Cavia_porcellus
ENSRNOG00000003988	Dnajc27	100	93.040	ENSCCAG00000021410	DNAJC27	100	93.040	Cebus_capucinus
ENSRNOG00000003988	Dnajc27	100	92.674	ENSCATG00000029231	DNAJC27	100	92.674	Cercocebus_atys
ENSRNOG00000003988	Dnajc27	100	92.674	ENSCLAG00000008212	DNAJC27	100	92.674	Chinchilla_lanigera
ENSRNOG00000003988	Dnajc27	100	93.040	ENSCSAG00000008536	DNAJC27	100	93.040	Chlorocebus_sabaeus
ENSRNOG00000003988	Dnajc27	100	89.744	ENSCPBG00000022284	DNAJC27	100	89.744	Chrysemys_picta_bellii
ENSRNOG00000003988	Dnajc27	97	64.015	ENSCING00000000917	rbj	99	64.015	Ciona_intestinalis
ENSRNOG00000003988	Dnajc27	97	64.773	ENSCSAVG00000006409	-	99	64.773	Ciona_savignyi
ENSRNOG00000003988	Dnajc27	100	91.941	ENSCANG00000029144	-	99	93.182	Colobus_angolensis_palliatus
ENSRNOG00000003988	Dnajc27	100	95.604	ENSCGRG00001023794	Dnajc27	100	95.604	Cricetulus_griseus_chok1gshd
ENSRNOG00000003988	Dnajc27	100	95.604	ENSCGRG00000007127	Dnajc27	100	95.604	Cricetulus_griseus_crigri
ENSRNOG00000003988	Dnajc27	100	82.418	ENSCSEG00000014284	dnajc27	100	82.418	Cynoglossus_semilaevis
ENSRNOG00000003988	Dnajc27	100	83.883	ENSDARG00000070916	dnajc27	100	83.883	Danio_rerio
ENSRNOG00000003988	Dnajc27	100	93.066	ENSDNOG00000040043	DNAJC27	100	93.066	Dasypus_novemcinctus
ENSRNOG00000003988	Dnajc27	100	94.505	ENSDORG00000015134	Dnajc27	100	94.505	Dipodomys_ordii
ENSRNOG00000003988	Dnajc27	100	93.040	ENSEASG00005010598	DNAJC27	100	93.040	Equus_asinus_asinus
ENSRNOG00000003988	Dnajc27	100	93.407	ENSECAG00000024595	DNAJC27	100	93.407	Equus_caballus
ENSRNOG00000003988	Dnajc27	100	82.784	ENSELUG00000019264	dnajc27	100	82.784	Esox_lucius
ENSRNOG00000003988	Dnajc27	100	93.407	ENSFCAG00000038919	DNAJC27	100	93.407	Felis_catus
ENSRNOG00000003988	Dnajc27	100	74.909	ENSFALG00000012658	DNAJC27	100	74.909	Ficedula_albicollis
ENSRNOG00000003988	Dnajc27	100	89.011	ENSGALG00000028967	DNAJC27	100	89.011	Gallus_gallus
ENSRNOG00000003988	Dnajc27	100	82.784	ENSGACG00000015457	dnajc27	100	82.784	Gasterosteus_aculeatus
ENSRNOG00000003988	Dnajc27	100	92.674	ENSGGOG00000004081	DNAJC27	100	92.674	Gorilla_gorilla
ENSRNOG00000003988	Dnajc27	100	82.418	ENSHBUG00000001491	dnajc27	100	82.418	Haplochromis_burtoni
ENSRNOG00000003988	Dnajc27	100	91.941	ENSHGLG00000013756	DNAJC27	100	91.941	Heterocephalus_glaber_female
ENSRNOG00000003988	Dnajc27	100	91.941	ENSHGLG00100009434	DNAJC27	100	91.941	Heterocephalus_glaber_male
ENSRNOG00000003988	Dnajc27	100	82.418	ENSHCOG00000002948	dnajc27	100	82.418	Hippocampus_comes
ENSRNOG00000003988	Dnajc27	100	83.150	ENSIPUG00000015086	dnajc27	100	83.150	Ictalurus_punctatus
ENSRNOG00000003988	Dnajc27	100	93.773	ENSSTOG00000006080	DNAJC27	100	93.773	Ictidomys_tridecemlineatus
ENSRNOG00000003988	Dnajc27	100	91.209	ENSJJAG00000016683	Dnajc27	100	91.209	Jaculus_jaculus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSKMAG00000011954	dnajc27	100	82.418	Kryptolebias_marmoratus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSLBEG00000028391	dnajc27	100	82.418	Labrus_bergylta
ENSRNOG00000003988	Dnajc27	93	67.790	ENSLBEG00000018738	-	95	67.286	Labrus_bergylta
ENSRNOG00000003988	Dnajc27	100	82.051	ENSLACG00000012994	DNAJC27	100	82.051	Latimeria_chalumnae
ENSRNOG00000003988	Dnajc27	100	83.150	ENSLOCG00000016679	dnajc27	100	83.150	Lepisosteus_oculatus
ENSRNOG00000003988	Dnajc27	100	92.674	ENSLAFG00000002742	DNAJC27	100	92.674	Loxodonta_africana
ENSRNOG00000003988	Dnajc27	100	92.674	ENSMFAG00000043229	DNAJC27	100	92.674	Macaca_fascicularis
ENSRNOG00000003988	Dnajc27	100	92.674	ENSMMUG00000009603	DNAJC27	100	92.674	Macaca_mulatta
ENSRNOG00000003988	Dnajc27	100	82.418	ENSMAMG00000022707	dnajc27	100	82.418	Mastacembelus_armatus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSMZEG00005012058	dnajc27	100	82.418	Maylandia_zebra
ENSRNOG00000003988	Dnajc27	100	94.505	ENSMAUG00000000099	Dnajc27	100	94.505	Mesocricetus_auratus
ENSRNOG00000003988	Dnajc27	100	93.773	ENSMICG00000027424	DNAJC27	99	94.886	Microcebus_murinus
ENSRNOG00000003988	Dnajc27	100	94.891	ENSMOCG00000015357	Dnajc27	100	94.891	Microtus_ochrogaster
ENSRNOG00000003988	Dnajc27	100	88.278	ENSMODG00000015869	DNAJC27	100	88.278	Monodelphis_domestica
ENSRNOG00000003988	Dnajc27	100	82.051	ENSMALG00000001189	dnajc27	100	82.051	Monopterus_albus
ENSRNOG00000003988	Dnajc27	100	97.436	MGP_CAROLIEiJ_G0017579	Dnajc27	100	97.436	Mus_caroli
ENSRNOG00000003988	Dnajc27	100	97.070	ENSMUSG00000020657	Dnajc27	100	97.070	Mus_musculus
ENSRNOG00000003988	Dnajc27	64	98.295	MGP_PahariEiJ_G0029339	-	80	98.295	Mus_pahari
ENSRNOG00000003988	Dnajc27	100	97.436	MGP_SPRETEiJ_G0018423	Dnajc27	100	97.436	Mus_spretus
ENSRNOG00000003988	Dnajc27	100	93.040	ENSMPUG00000014032	DNAJC27	100	93.040	Mustela_putorius_furo
ENSRNOG00000003988	Dnajc27	100	92.308	ENSMLUG00000014143	DNAJC27	100	92.308	Myotis_lucifugus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSNBRG00000022552	dnajc27	100	82.418	Neolamprologus_brichardi
ENSRNOG00000003988	Dnajc27	100	93.407	ENSNLEG00000001103	DNAJC27	100	93.407	Nomascus_leucogenys
ENSRNOG00000003988	Dnajc27	100	91.209	ENSOPRG00000008650	DNAJC27	100	91.209	Ochotona_princeps
ENSRNOG00000003988	Dnajc27	100	92.308	ENSODEG00000007488	DNAJC27	100	92.308	Octodon_degus
ENSRNOG00000003988	Dnajc27	96	82.061	ENSONIG00000009008	dnajc27	97	82.061	Oreochromis_niloticus
ENSRNOG00000003988	Dnajc27	100	94.139	ENSOCUG00000011260	DNAJC27	100	94.139	Oryctolagus_cuniculus
ENSRNOG00000003988	Dnajc27	100	81.685	ENSORLG00000001134	dnajc27	100	81.685	Oryzias_latipes
ENSRNOG00000003988	Dnajc27	100	81.685	ENSORLG00020006790	dnajc27	100	81.685	Oryzias_latipes_hni
ENSRNOG00000003988	Dnajc27	100	81.685	ENSORLG00015010005	dnajc27	100	81.685	Oryzias_latipes_hsok
ENSRNOG00000003988	Dnajc27	100	81.319	ENSOMEG00000017890	dnajc27	100	81.319	Oryzias_melastigma
ENSRNOG00000003988	Dnajc27	100	93.407	ENSOGAG00000015168	DNAJC27	100	93.407	Otolemur_garnettii
ENSRNOG00000003988	Dnajc27	100	91.971	ENSOARG00000018127	DNAJC27	100	91.971	Ovis_aries
ENSRNOG00000003988	Dnajc27	100	93.040	ENSPPAG00000031678	DNAJC27	100	93.040	Pan_paniscus
ENSRNOG00000003988	Dnajc27	100	93.407	ENSPPRG00000022920	DNAJC27	100	93.407	Panthera_pardus
ENSRNOG00000003988	Dnajc27	100	93.407	ENSPTIG00000013443	DNAJC27	100	93.407	Panthera_tigris_altaica
ENSRNOG00000003988	Dnajc27	100	93.040	ENSPTRG00000011719	DNAJC27	100	93.040	Pan_troglodytes
ENSRNOG00000003988	Dnajc27	100	92.308	ENSPANG00000023972	DNAJC27	100	92.308	Papio_anubis
ENSRNOG00000003988	Dnajc27	65	83.051	ENSPKIG00000005039	dnajc27	96	83.051	Paramormyrops_kingsleyae
ENSRNOG00000003988	Dnajc27	100	83.150	ENSPKIG00000005931	DNAJC27	100	83.150	Paramormyrops_kingsleyae
ENSRNOG00000003988	Dnajc27	100	90.110	ENSPSIG00000009930	DNAJC27	100	90.110	Pelodiscus_sinensis
ENSRNOG00000003988	Dnajc27	98	73.626	ENSPMAG00000005573	dnajc27	98	73.626	Petromyzon_marinus
ENSRNOG00000003988	Dnajc27	100	88.278	ENSPCIG00000025239	DNAJC27	100	88.278	Phascolarctos_cinereus
ENSRNOG00000003988	Dnajc27	100	81.685	ENSPFOG00000006335	dnajc27	100	81.685	Poecilia_formosa
ENSRNOG00000003988	Dnajc27	100	82.051	ENSPLAG00000008845	dnajc27	100	82.051	Poecilia_latipinna
ENSRNOG00000003988	Dnajc27	100	81.685	ENSPMEG00000018256	dnajc27	100	81.685	Poecilia_mexicana
ENSRNOG00000003988	Dnajc27	66	79.558	ENSPREG00000010228	dnajc27	93	79.558	Poecilia_reticulata
ENSRNOG00000003988	Dnajc27	100	93.040	ENSPPYG00000012594	DNAJC27	100	93.040	Pongo_abelii
ENSRNOG00000003988	Dnajc27	100	94.139	ENSPCOG00000025665	DNAJC27	100	94.139	Propithecus_coquereli
ENSRNOG00000003988	Dnajc27	100	93.407	ENSPVAG00000017520	DNAJC27	100	93.407	Pteropus_vampyrus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSPNYG00000023681	dnajc27	100	82.418	Pundamilia_nyererei
ENSRNOG00000003988	Dnajc27	100	82.418	ENSPNAG00000025619	dnajc27	100	82.418	Pygocentrus_nattereri
ENSRNOG00000003988	Dnajc27	100	92.308	ENSRBIG00000041935	-	99	93.750	Rhinopithecus_bieti
ENSRNOG00000003988	Dnajc27	100	92.674	ENSRROG00000031027	-	99	94.318	Rhinopithecus_roxellana
ENSRNOG00000003988	Dnajc27	50	88.971	ENSSHAG00000002151	-	93	88.971	Sarcophilus_harrisii
ENSRNOG00000003988	Dnajc27	100	83.150	ENSSFOG00015017512	dnajc27	100	83.150	Scleropages_formosus
ENSRNOG00000003988	Dnajc27	100	83.516	ENSSFOG00015020074	DNAJC27	100	83.516	Scleropages_formosus
ENSRNOG00000003988	Dnajc27	100	82.784	ENSSMAG00000000032	dnajc27	100	82.784	Scophthalmus_maximus
ENSRNOG00000003988	Dnajc27	100	82.418	ENSSDUG00000003036	dnajc27	100	82.418	Seriola_dumerili
ENSRNOG00000003988	Dnajc27	100	82.418	ENSSLDG00000015143	dnajc27	100	82.418	Seriola_lalandi_dorsalis
ENSRNOG00000003988	Dnajc27	58	74.843	ENSSPUG00000006583	DNAJC27	99	74.843	Sphenodon_punctatus
ENSRNOG00000003988	Dnajc27	100	82.051	ENSSPAG00000009154	dnajc27	100	82.051	Stegastes_partitus
ENSRNOG00000003988	Dnajc27	100	93.040	ENSSSCG00000008577	DNAJC27	99	95.455	Sus_scrofa
ENSRNOG00000003988	Dnajc27	100	82.418	ENSTRUG00000023427	dnajc27	100	82.418	Takifugu_rubripes
ENSRNOG00000003988	Dnajc27	100	82.418	ENSTNIG00000006596	dnajc27	100	82.418	Tetraodon_nigroviridis
ENSRNOG00000003988	Dnajc27	100	93.773	ENSTBEG00000005463	DNAJC27	100	93.773	Tupaia_belangeri
ENSRNOG00000003988	Dnajc27	100	92.308	ENSTTRG00000015163	DNAJC27	100	92.308	Tursiops_truncatus
ENSRNOG00000003988	Dnajc27	100	93.407	ENSUAMG00000009585	DNAJC27	100	93.407	Ursus_americanus
ENSRNOG00000003988	Dnajc27	100	93.407	ENSUMAG00000022558	DNAJC27	100	93.407	Ursus_maritimus
ENSRNOG00000003988	Dnajc27	100	86.447	ENSVPAG00000006953	DNAJC27	100	86.447	Vicugna_pacos
ENSRNOG00000003988	Dnajc27	100	93.040	ENSVVUG00000015241	DNAJC27	100	93.040	Vulpes_vulpes
ENSRNOG00000003988	Dnajc27	100	81.319	ENSXCOG00000010812	dnajc27	100	81.319	Xiphophorus_couchianus
ENSRNOG00000003988	Dnajc27	100	81.319	ENSXMAG00000003407	dnajc27	100	81.319	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0032482	Rab protein signal transduction	21873635.	IBA	Process
GO:0043410	positive regulation of MAPK cascade	-	ISO	Process
GO:0070374	positive regulation of ERK1 and ERK2 cascade	-	ISO	Process
GO:0071701	regulation of MAPK export from nucleus	-	ISO	Process