EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004099 (Gene tree)
Gene ID: 304763
Gene Symbol: R3hdm1
Alias: LOC304763|R3hdm
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 138196 bases
Position: chr13:44812567-44950762
Accession: 1307497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000005372	R3H	PF01424.22	2e-11	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000005372	-	4817	XM_006249690	ENSRNOP00000005372	1133 (aa)	XP_006249752	F1LNT3

Gene Model

Click here to download ENSRNOG00000004099's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004099's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000004099	R3hdm1	99	44.397	ENSRNOG00000007801	R3hdm2	95	58.537
ENSRNOG00000004099	R3hdm1	68	49.689	ENSRNOG00000008919	Arpp21	88	49.742

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004099	R3hdm1	100	86.972	ENSG00000048991	R3HDM1	93	100.000	Homo_sapiens
ENSRNOG00000004099	R3hdm1	89	48.614	ENSAPOG00000020850	r3hdm1	97	47.822	Acanthochromis_polyacanthus
ENSRNOG00000004099	R3hdm1	100	87.764	ENSAMEG00000014886	R3HDM1	100	88.116	Ailuropoda_melanoleuca
ENSRNOG00000004099	R3hdm1	89	47.798	ENSAOCG00000005192	r3hdm1	99	47.403	Amphiprion_ocellaris
ENSRNOG00000004099	R3hdm1	89	45.746	ENSAPEG00000016108	r3hdm1	99	45.598	Amphiprion_percula
ENSRNOG00000004099	R3hdm1	89	45.421	ENSATEG00000000232	r3hdm1	99	45.336	Anabas_testudineus
ENSRNOG00000004099	R3hdm1	100	74.582	ENSAPLG00000015231	R3HDM1	100	74.120	Anas_platyrhynchos
ENSRNOG00000004099	R3hdm1	100	75.965	ENSACAG00000001676	R3HDM1	100	76.357	Anolis_carolinensis
ENSRNOG00000004099	R3hdm1	100	86.983	ENSANAG00000035334	R3HDM1	100	87.247	Aotus_nancymaae
ENSRNOG00000004099	R3hdm1	80	47.126	ENSACLG00000027282	r3hdm1	94	46.639	Astatotilapia_calliptera
ENSRNOG00000004099	R3hdm1	93	70.983	ENSAMXG00000012861	R3HDM1	100	70.913	Astyanax_mexicanus
ENSRNOG00000004099	R3hdm1	93	62.791	ENSAMXG00000003536	r3hdm1	100	62.704	Astyanax_mexicanus
ENSRNOG00000004099	R3hdm1	61	39.972	ENSAMXG00000020587	arpp21	88	37.450	Astyanax_mexicanus
ENSRNOG00000004099	R3hdm1	100	89.506	ENSBTAG00000013302	R3HDM1	100	89.789	Bos_taurus
ENSRNOG00000004099	R3hdm1	100	87.489	ENSCJAG00000011718	R3HDM1	100	87.489	Callithrix_jacchus
ENSRNOG00000004099	R3hdm1	100	87.940	ENSCAFG00000005075	R3HDM1	100	88.292	Canis_familiaris
ENSRNOG00000004099	R3hdm1	100	91.109	ENSCAFG00020016119	R3HDM1	100	91.109	Canis_lupus_dingo
ENSRNOG00000004099	R3hdm1	100	89.771	ENSCHIG00000020851	R3HDM1	100	89.789	Capra_hircus
ENSRNOG00000004099	R3hdm1	100	88.840	ENSCPOG00000012784	R3HDM1	100	88.840	Cavia_porcellus
ENSRNOG00000004099	R3hdm1	100	87.412	ENSCCAG00000027199	R3HDM1	100	87.412	Cebus_capucinus
ENSRNOG00000004099	R3hdm1	100	89.358	ENSCATG00000023642	R3HDM1	100	89.358	Cercocebus_atys
ENSRNOG00000004099	R3hdm1	100	89.016	ENSCLAG00000007962	R3HDM1	100	89.104	Chinchilla_lanigera
ENSRNOG00000004099	R3hdm1	100	89.270	ENSCSAG00000016356	R3HDM1	100	89.270	Chlorocebus_sabaeus
ENSRNOG00000004099	R3hdm1	88	75.459	ENSCHOG00000013638	R3HDM1	91	75.197	Choloepus_hoffmanni
ENSRNOG00000004099	R3hdm1	92	74.976	ENSCPBG00000009645	R3HDM1	100	76.541	Chrysemys_picta_bellii
ENSRNOG00000004099	R3hdm1	100	86.544	ENSCANG00000034748	R3HDM1	100	86.807	Colobus_angolensis_palliatus
ENSRNOG00000004099	R3hdm1	99	96.117	ENSCGRG00001012357	R3hdm1	97	96.117	Cricetulus_griseus_chok1gshd
ENSRNOG00000004099	R3hdm1	100	96.130	ENSCGRG00000012080	R3hdm1	100	96.130	Cricetulus_griseus_crigri
ENSRNOG00000004099	R3hdm1	89	41.637	ENSCSEG00000008944	r3hdm1	99	42.661	Cynoglossus_semilaevis
ENSRNOG00000004099	R3hdm1	89	46.960	ENSCVAG00000007582	r3hdm1	99	46.425	Cyprinodon_variegatus
ENSRNOG00000004099	R3hdm1	65	36.939	ENSDARG00000061081	arpp21	71	40.625	Danio_rerio
ENSRNOG00000004099	R3hdm1	100	84.063	ENSDNOG00000000771	R3HDM1	100	84.063	Dasypus_novemcinctus
ENSRNOG00000004099	R3hdm1	93	89.024	ENSETEG00000013606	R3HDM1	100	76.496	Echinops_telfairi
ENSRNOG00000004099	R3hdm1	100	90.291	ENSEASG00005007392	R3HDM1	100	94.089	Equus_asinus_asinus
ENSRNOG00000004099	R3hdm1	100	90.212	ENSECAG00000019114	R3HDM1	100	94.089	Equus_caballus
ENSRNOG00000004099	R3hdm1	88	81.919	ENSEEUG00000012589	R3HDM1	89	83.205	Erinaceus_europaeus
ENSRNOG00000004099	R3hdm1	93	48.864	ENSELUG00000014413	r3hdm1	100	50.925	Esox_lucius
ENSRNOG00000004099	R3hdm1	86	59.704	ENSELUG00000004909	R3HDM1	99	52.213	Esox_lucius
ENSRNOG00000004099	R3hdm1	100	90.653	ENSFCAG00000027113	R3HDM1	100	94.581	Felis_catus
ENSRNOG00000004099	R3hdm1	100	89.543	ENSFDAG00000016478	R3HDM1	99	93.358	Fukomys_damarensis
ENSRNOG00000004099	R3hdm1	89	47.300	ENSFHEG00000018713	r3hdm1	99	46.623	Fundulus_heteroclitus
ENSRNOG00000004099	R3hdm1	59	67.391	ENSGMOG00000006042	-	74	66.957	Gadus_morhua
ENSRNOG00000004099	R3hdm1	100	56.010	ENSGALG00000012246	R3HDM1	99	85.574	Gallus_gallus
ENSRNOG00000004099	R3hdm1	89	44.424	ENSGAFG00000006203	r3hdm1	99	44.331	Gambusia_affinis
ENSRNOG00000004099	R3hdm1	87	49.044	ENSGACG00000014925	r3hdm1	99	48.654	Gasterosteus_aculeatus
ENSRNOG00000004099	R3hdm1	100	75.197	ENSGAGG00000007840	R3HDM1	96	82.544	Gopherus_agassizii
ENSRNOG00000004099	R3hdm1	100	87.060	ENSGGOG00000008156	R3HDM1	100	87.412	Gorilla_gorilla
ENSRNOG00000004099	R3hdm1	100	89.613	ENSHGLG00000015718	R3HDM1	99	92.989	Heterocephalus_glaber_female
ENSRNOG00000004099	R3hdm1	100	64.794	ENSHGLG00100015374	-	100	65.286	Heterocephalus_glaber_male
ENSRNOG00000004099	R3hdm1	100	89.349	ENSHGLG00100003184	-	100	89.437	Heterocephalus_glaber_male
ENSRNOG00000004099	R3hdm1	79	43.887	ENSHCOG00000013366	r3hdm1	88	60.250	Hippocampus_comes
ENSRNOG00000004099	R3hdm1	92	52.007	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSRNOG00000004099	R3hdm1	89	55.396	ENSIPUG00000001676	R3HDM1	99	65.476	Ictalurus_punctatus
ENSRNOG00000004099	R3hdm1	100	90.941	ENSSTOG00000007572	R3HDM1	99	94.096	Ictidomys_tridecemlineatus
ENSRNOG00000004099	R3hdm1	95	70.683	ENSLACG00000005334	R3HDM1	99	71.429	Latimeria_chalumnae
ENSRNOG00000004099	R3hdm1	100	65.746	ENSLOCG00000001641	r3hdm1	100	65.630	Lepisosteus_oculatus
ENSRNOG00000004099	R3hdm1	100	89.692	ENSLAFG00000009065	R3HDM1	100	89.692	Loxodonta_africana
ENSRNOG00000004099	R3hdm1	100	86.620	ENSMFAG00000030331	R3HDM1	100	94.581	Macaca_fascicularis
ENSRNOG00000004099	R3hdm1	100	86.532	ENSMMUG00000009844	R3HDM1	100	85.714	Macaca_mulatta
ENSRNOG00000004099	R3hdm1	100	86.532	ENSMNEG00000027793	R3HDM1	100	94.581	Macaca_nemestrina
ENSRNOG00000004099	R3hdm1	100	86.708	ENSMLEG00000043189	R3HDM1	100	87.060	Mandrillus_leucophaeus
ENSRNOG00000004099	R3hdm1	89	47.330	ENSMAMG00000004532	r3hdm1	99	46.820	Mastacembelus_armatus
ENSRNOG00000004099	R3hdm1	89	47.349	ENSMZEG00005003157	r3hdm1	99	46.636	Maylandia_zebra
ENSRNOG00000004099	R3hdm1	100	74.142	ENSMGAG00000012461	R3HDM1	100	73.013	Meleagris_gallopavo
ENSRNOG00000004099	R3hdm1	100	95.526	ENSMAUG00000010315	R3hdm1	100	95.526	Mesocricetus_auratus
ENSRNOG00000004099	R3hdm1	96	65.257	ENSMICG00000042655	-	100	84.483	Microcebus_murinus
ENSRNOG00000004099	R3hdm1	100	87.170	ENSMICG00000005900	-	100	87.170	Microcebus_murinus
ENSRNOG00000004099	R3hdm1	90	77.069	ENSMODG00000000923	R3HDM1	97	77.165	Monodelphis_domestica
ENSRNOG00000004099	R3hdm1	99	45.729	ENSMALG00000009000	r3hdm1	100	45.137	Monopterus_albus
ENSRNOG00000004099	R3hdm1	100	97.533	MGP_CAROLIEiJ_G0014543	R3hdm1	100	97.533	Mus_caroli
ENSRNOG00000004099	R3hdm1	100	97.533	ENSMUSG00000056211	R3hdm1	100	97.533	Mus_musculus
ENSRNOG00000004099	R3hdm1	100	97.357	MGP_PahariEiJ_G0027779	R3hdm1	100	97.357	Mus_pahari
ENSRNOG00000004099	R3hdm1	100	97.533	MGP_SPRETEiJ_G0015350	R3hdm1	100	97.533	Mus_spretus
ENSRNOG00000004099	R3hdm1	100	87.566	ENSMPUG00000002412	R3HDM1	100	88.018	Mustela_putorius_furo
ENSRNOG00000004099	R3hdm1	100	86.655	ENSMLUG00000013824	R3HDM1	100	86.743	Myotis_lucifugus
ENSRNOG00000004099	R3hdm1	100	87.236	ENSNLEG00000008622	R3HDM1	100	87.236	Nomascus_leucogenys
ENSRNOG00000004099	R3hdm1	89	66.930	ENSMEUG00000011784	R3HDM1	100	67.291	Notamacropus_eugenii
ENSRNOG00000004099	R3hdm1	100	88.644	ENSODEG00000008607	R3HDM1	100	90.033	Octodon_degus
ENSRNOG00000004099	R3hdm1	94	46.086	ENSONIG00000012017	r3hdm1	98	45.350	Oreochromis_niloticus
ENSRNOG00000004099	R3hdm1	100	76.646	ENSOANG00000007987	R3HDM1	100	76.491	Ornithorhynchus_anatinus
ENSRNOG00000004099	R3hdm1	89	86.529	ENSOCUG00000017366	R3HDM1	98	86.529	Oryctolagus_cuniculus
ENSRNOG00000004099	R3hdm1	89	45.951	ENSORLG00000004297	r3hdm1	99	46.931	Oryzias_latipes
ENSRNOG00000004099	R3hdm1	89	45.888	ENSORLG00015017355	r3hdm1	99	47.070	Oryzias_latipes_hsok
ENSRNOG00000004099	R3hdm1	100	87.202	ENSOGAG00000003136	R3HDM1	100	87.654	Otolemur_garnettii
ENSRNOG00000004099	R3hdm1	100	86.761	ENSOARG00000010788	R3HDM1	100	86.960	Ovis_aries
ENSRNOG00000004099	R3hdm1	100	86.907	ENSPPAG00000027858	R3HDM1	100	87.346	Pan_paniscus
ENSRNOG00000004099	R3hdm1	100	88.085	ENSPPRG00000002626	R3HDM1	100	88.106	Panthera_pardus
ENSRNOG00000004099	R3hdm1	100	87.820	ENSPTIG00000016581	R3HDM1	100	87.841	Panthera_tigris_altaica
ENSRNOG00000004099	R3hdm1	100	86.907	ENSPTRG00000012494	R3HDM1	100	86.292	Pan_troglodytes
ENSRNOG00000004099	R3hdm1	100	86.708	ENSPANG00000026448	R3HDM1	100	87.060	Papio_anubis
ENSRNOG00000004099	R3hdm1	94	65.926	ENSPKIG00000004328	r3hdm1	91	74.603	Paramormyrops_kingsleyae
ENSRNOG00000004099	R3hdm1	100	73.680	ENSPSIG00000012915	R3HDM1	100	73.615	Pelodiscus_sinensis
ENSRNOG00000004099	R3hdm1	100	95.771	ENSPEMG00000015187	R3hdm1	100	95.771	Peromyscus_maniculatus_bairdii
ENSRNOG00000004099	R3hdm1	88	43.478	ENSPMAG00000003369	-	98	43.919	Petromyzon_marinus
ENSRNOG00000004099	R3hdm1	100	80.543	ENSPCIG00000002491	R3HDM1	100	88.971	Phascolarctos_cinereus
ENSRNOG00000004099	R3hdm1	89	47.915	ENSPFOG00000015036	r3hdm1	99	47.359	Poecilia_formosa
ENSRNOG00000004099	R3hdm1	89	44.963	ENSPLAG00000018042	r3hdm1	99	44.683	Poecilia_latipinna
ENSRNOG00000004099	R3hdm1	89	44.362	ENSPMEG00000023947	r3hdm1	99	44.268	Poecilia_mexicana
ENSRNOG00000004099	R3hdm1	89	47.597	ENSPREG00000007902	r3hdm1	86	61.779	Poecilia_reticulata
ENSRNOG00000004099	R3hdm1	100	85.928	ENSPPYG00000012815	R3HDM1	100	85.114	Pongo_abelii
ENSRNOG00000004099	R3hdm1	100	75.419	ENSPCAG00000006208	R3HDM1	100	75.330	Procavia_capensis
ENSRNOG00000004099	R3hdm1	100	84.710	ENSPCOG00000012698	R3HDM1	100	84.886	Propithecus_coquereli
ENSRNOG00000004099	R3hdm1	100	79.174	ENSPVAG00000006098	R3HDM1	100	78.040	Pteropus_vampyrus
ENSRNOG00000004099	R3hdm1	76	75.641	ENSPNAG00000005436	R3HDM1	99	75.563	Pygocentrus_nattereri
ENSRNOG00000004099	R3hdm1	52	58.000	ENSPNAG00000004162	arpp21	65	43.182	Pygocentrus_nattereri
ENSRNOG00000004099	R3hdm1	93	63.109	ENSPNAG00000013952	r3hdm1	100	63.023	Pygocentrus_nattereri
ENSRNOG00000004099	R3hdm1	100	83.831	ENSRBIG00000033317	R3HDM1	100	97.417	Rhinopithecus_bieti
ENSRNOG00000004099	R3hdm1	100	84.169	ENSRROG00000034534	R3HDM1	100	86.368	Rhinopithecus_roxellana
ENSRNOG00000004099	R3hdm1	100	86.444	ENSSBOG00000020389	R3HDM1	100	85.464	Saimiri_boliviensis_boliviensis
ENSRNOG00000004099	R3hdm1	100	78.414	ENSSHAG00000016999	R3HDM1	100	78.716	Sarcophilus_harrisii
ENSRNOG00000004099	R3hdm1	100	54.080	ENSSFOG00015019851	-	99	56.131	Scleropages_formosus
ENSRNOG00000004099	R3hdm1	93	69.903	ENSSFOG00015014134	r3hdm1	100	69.830	Scleropages_formosus
ENSRNOG00000004099	R3hdm1	99	43.525	ENSSMAG00000001669	r3hdm1	99	42.821	Scophthalmus_maximus
ENSRNOG00000004099	R3hdm1	89	45.463	ENSSDUG00000010749	r3hdm1	99	45.505	Seriola_dumerili
ENSRNOG00000004099	R3hdm1	99	45.562	ENSSLDG00000004499	r3hdm1	99	45.356	Seriola_lalandi_dorsalis
ENSRNOG00000004099	R3hdm1	67	81.395	ENSSARG00000000352	-	69	81.395	Sorex_araneus
ENSRNOG00000004099	R3hdm1	100	75.680	ENSSPUG00000004167	R3HDM1	100	75.680	Sphenodon_punctatus
ENSRNOG00000004099	R3hdm1	89	47.315	ENSSPAG00000004648	r3hdm1	99	47.323	Stegastes_partitus
ENSRNOG00000004099	R3hdm1	100	90.396	ENSSSCG00000015692	R3HDM1	100	90.845	Sus_scrofa
ENSRNOG00000004099	R3hdm1	100	69.474	ENSTGUG00000011750	R3HDM1	100	69.676	Taeniopygia_guttata
ENSRNOG00000004099	R3hdm1	79	46.667	ENSTRUG00000011654	r3hdm1	93	46.598	Takifugu_rubripes
ENSRNOG00000004099	R3hdm1	87	44.575	ENSTNIG00000010362	r3hdm1	99	44.086	Tetraodon_nigroviridis
ENSRNOG00000004099	R3hdm1	100	81.850	ENSTTRG00000003935	R3HDM1	100	80.719	Tursiops_truncatus
ENSRNOG00000004099	R3hdm1	71	87.871	ENSUAMG00000024806	R3HDM1	99	91.144	Ursus_americanus
ENSRNOG00000004099	R3hdm1	100	83.774	ENSUMAG00000005552	R3HDM1	100	84.975	Ursus_maritimus
ENSRNOG00000004099	R3hdm1	93	85.965	ENSVPAG00000007333	R3HDM1	93	85.965	Vicugna_pacos
ENSRNOG00000004099	R3hdm1	100	91.101	ENSVVUG00000006457	R3HDM1	100	91.101	Vulpes_vulpes
ENSRNOG00000004099	R3hdm1	90	63.743	ENSXETG00000019330	r3hdm1	100	63.751	Xenopus_tropicalis
ENSRNOG00000004099	R3hdm1	68	47.181	ENSXCOG00000017448	r3hdm1	94	47.080	Xiphophorus_couchianus
ENSRNOG00000004099	R3hdm1	89	47.271	ENSXMAG00000007885	r3hdm1	99	47.398	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function