EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004598 (Gene tree)
Gene ID: 690308
Gene Symbol: Tsen54
Alias: LOC690308
Full Name: tRNA splicing endonuclease subunit 54
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 7585 bases
Position: chr10:104359342-104366926
Accession: 1597379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006327	tRNA_int_end_N2	PF12928.7	6.1e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000006327	-	1979	XM_006247737	ENSRNOP00000006327	525 (aa)	XP_006247799	D3ZZT6

Gene Model

Click here to download ENSRNOG00000004598's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004598's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004598	Tsen54	100	81.559	ENSG00000182173	TSEN54	99	88.732	Homo_sapiens
ENSRNOG00000004598	Tsen54	97	46.628	ENSAPOG00000009659	tsen54	99	44.009	Acanthochromis_polyacanthus
ENSRNOG00000004598	Tsen54	99	76.792	ENSAMEG00000009414	TSEN54	99	77.358	Ailuropoda_melanoleuca
ENSRNOG00000004598	Tsen54	97	46.394	ENSAOCG00000000152	tsen54	95	46.394	Amphiprion_ocellaris
ENSRNOG00000004598	Tsen54	97	46.199	ENSAPEG00000018931	tsen54	94	46.199	Amphiprion_percula
ENSRNOG00000004598	Tsen54	97	43.954	ENSATEG00000019860	tsen54	97	44.444	Anabas_testudineus
ENSRNOG00000004598	Tsen54	86	54.013	ENSAPLG00000009419	TSEN54	100	54.013	Anas_platyrhynchos
ENSRNOG00000004598	Tsen54	99	52.372	ENSACAG00000006714	TSEN54	99	52.372	Anolis_carolinensis
ENSRNOG00000004598	Tsen54	99	80.732	ENSANAG00000024061	TSEN54	99	80.952	Aotus_nancymaae
ENSRNOG00000004598	Tsen54	97	45.298	ENSACLG00000019800	tsen54	96	45.298	Astatotilapia_calliptera
ENSRNOG00000004598	Tsen54	97	47.750	ENSAMXG00000006546	tsen54	96	47.750	Astyanax_mexicanus
ENSRNOG00000004598	Tsen54	100	79.623	ENSBTAG00000000824	TSEN54	100	80.414	Bos_taurus
ENSRNOG00000004598	Tsen54	99	79.191	ENSCJAG00000014278	TSEN54	99	79.429	Callithrix_jacchus
ENSRNOG00000004598	Tsen54	100	79.661	ENSCAFG00000004798	TSEN54	100	80.226	Canis_familiaris
ENSRNOG00000004598	Tsen54	100	79.661	ENSCAFG00020000312	TSEN54	100	80.226	Canis_lupus_dingo
ENSRNOG00000004598	Tsen54	100	80.000	ENSCHIG00000019908	TSEN54	100	80.000	Capra_hircus
ENSRNOG00000004598	Tsen54	86	77.143	ENSTSYG00000037439	TSEN54	100	77.802	Carlito_syrichta
ENSRNOG00000004598	Tsen54	99	79.769	ENSCCAG00000036624	TSEN54	99	79.619	Cebus_capucinus
ENSRNOG00000004598	Tsen54	97	81.445	ENSCATG00000042877	TSEN54	99	81.524	Cercocebus_atys
ENSRNOG00000004598	Tsen54	97	81.213	ENSCLAG00000002924	TSEN54	99	81.107	Chinchilla_lanigera
ENSRNOG00000004598	Tsen54	100	80.798	ENSCSAG00000004809	TSEN54	100	81.179	Chlorocebus_sabaeus
ENSRNOG00000004598	Tsen54	99	55.243	ENSCPBG00000028071	TSEN54	99	55.243	Chrysemys_picta_bellii
ENSRNOG00000004598	Tsen54	100	80.798	ENSCANG00000028053	TSEN54	100	80.798	Colobus_angolensis_palliatus
ENSRNOG00000004598	Tsen54	100	89.524	ENSCGRG00001020029	Tsen54	100	89.524	Cricetulus_griseus_chok1gshd
ENSRNOG00000004598	Tsen54	84	87.783	ENSCGRG00000016289	Tsen54	100	87.783	Cricetulus_griseus_crigri
ENSRNOG00000004598	Tsen54	80	38.657	ENSCSEG00000020586	tsen54	99	38.657	Cynoglossus_semilaevis
ENSRNOG00000004598	Tsen54	80	43.529	ENSDARG00000036844	tsen54	99	44.471	Danio_rerio
ENSRNOG00000004598	Tsen54	100	75.706	ENSDNOG00000018452	TSEN54	100	77.589	Dasypus_novemcinctus
ENSRNOG00000004598	Tsen54	100	81.524	ENSDORG00000004073	Tsen54	100	81.524	Dipodomys_ordii
ENSRNOG00000004598	Tsen54	97	36.735	ENSEBUG00000005203	TSEN54	95	36.735	Eptatretus_burgeri
ENSRNOG00000004598	Tsen54	100	79.811	ENSEASG00005000579	TSEN54	100	79.811	Equus_asinus_asinus
ENSRNOG00000004598	Tsen54	100	79.623	ENSECAG00000004924	TSEN54	100	79.623	Equus_caballus
ENSRNOG00000004598	Tsen54	86	72.648	ENSEEUG00000008467	TSEN54	100	73.085	Erinaceus_europaeus
ENSRNOG00000004598	Tsen54	97	45.167	ENSELUG00000017703	tsen54	90	45.167	Esox_lucius
ENSRNOG00000004598	Tsen54	100	79.849	ENSFCAG00000023712	TSEN54	100	80.414	Felis_catus
ENSRNOG00000004598	Tsen54	94	53.333	ENSFALG00000001119	TSEN54	97	52.418	Ficedula_albicollis
ENSRNOG00000004598	Tsen54	86	81.514	ENSFDAG00000019090	TSEN54	99	81.514	Fukomys_damarensis
ENSRNOG00000004598	Tsen54	97	47.961	ENSFHEG00000005470	tsen54	96	47.961	Fundulus_heteroclitus
ENSRNOG00000004598	Tsen54	81	46.429	ENSGMOG00000013146	tsen54	99	46.429	Gadus_morhua
ENSRNOG00000004598	Tsen54	95	50.198	ENSGALG00000047163	TSEN54	98	50.198	Gallus_gallus
ENSRNOG00000004598	Tsen54	99	47.538	ENSGAFG00000005111	tsen54	99	47.538	Gambusia_affinis
ENSRNOG00000004598	Tsen54	96	44.338	ENSGACG00000014987	tsen54	99	44.338	Gasterosteus_aculeatus
ENSRNOG00000004598	Tsen54	100	56.425	ENSGAGG00000006825	TSEN54	99	56.425	Gopherus_agassizii
ENSRNOG00000004598	Tsen54	97	80.906	ENSGGOG00000009417	TSEN54	100	81.299	Gorilla_gorilla
ENSRNOG00000004598	Tsen54	87	43.856	ENSHBUG00000018296	tsen54	99	39.059	Haplochromis_burtoni
ENSRNOG00000004598	Tsen54	100	81.714	ENSHGLG00000007979	TSEN54	100	81.714	Heterocephalus_glaber_female
ENSRNOG00000004598	Tsen54	100	80.762	ENSHGLG00100005497	TSEN54	100	80.762	Heterocephalus_glaber_male
ENSRNOG00000004598	Tsen54	80	42.553	ENSHCOG00000007481	tsen54	99	42.553	Hippocampus_comes
ENSRNOG00000004598	Tsen54	99	41.233	ENSIPUG00000000590	tsen54	98	42.197	Ictalurus_punctatus
ENSRNOG00000004598	Tsen54	100	77.905	ENSSTOG00000012883	TSEN54	100	77.905	Ictidomys_tridecemlineatus
ENSRNOG00000004598	Tsen54	100	83.302	ENSJJAG00000007365	Tsen54	100	83.302	Jaculus_jaculus
ENSRNOG00000004598	Tsen54	97	45.047	ENSKMAG00000006944	tsen54	97	45.047	Kryptolebias_marmoratus
ENSRNOG00000004598	Tsen54	97	44.402	ENSLBEG00000004199	tsen54	97	44.402	Labrus_bergylta
ENSRNOG00000004598	Tsen54	97	46.198	ENSLACG00000009497	TSEN54	100	46.198	Latimeria_chalumnae
ENSRNOG00000004598	Tsen54	99	47.330	ENSLOCG00000011191	tsen54	99	48.148	Lepisosteus_oculatus
ENSRNOG00000004598	Tsen54	99	74.291	ENSLAFG00000011655	TSEN54	99	74.291	Loxodonta_africana
ENSRNOG00000004598	Tsen54	100	80.989	ENSMFAG00000000712	TSEN54	100	81.369	Macaca_fascicularis
ENSRNOG00000004598	Tsen54	100	80.798	ENSMNEG00000029199	TSEN54	100	81.179	Macaca_nemestrina
ENSRNOG00000004598	Tsen54	86	79.867	ENSMLEG00000044168	TSEN54	88	80.310	Mandrillus_leucophaeus
ENSRNOG00000004598	Tsen54	98	45.560	ENSMAMG00000019773	tsen54	98	45.560	Mastacembelus_armatus
ENSRNOG00000004598	Tsen54	97	45.298	ENSMZEG00005000884	tsen54	96	45.298	Maylandia_zebra
ENSRNOG00000004598	Tsen54	97	50.000	ENSMGAG00000009556	TSEN54	97	50.000	Meleagris_gallopavo
ENSRNOG00000004598	Tsen54	100	89.905	ENSMAUG00000016838	Tsen54	100	89.905	Mesocricetus_auratus
ENSRNOG00000004598	Tsen54	100	79.087	ENSMICG00000044012	TSEN54	100	79.848	Microcebus_murinus
ENSRNOG00000004598	Tsen54	100	90.095	ENSMOCG00000021585	Tsen54	100	90.095	Microtus_ochrogaster
ENSRNOG00000004598	Tsen54	96	42.105	ENSMMOG00000020189	tsen54	99	43.333	Mola_mola
ENSRNOG00000004598	Tsen54	98	66.038	ENSMODG00000007438	TSEN54	98	65.985	Monodelphis_domestica
ENSRNOG00000004598	Tsen54	97	43.100	ENSMALG00000020573	tsen54	97	43.100	Monopterus_albus
ENSRNOG00000004598	Tsen54	100	92.000	MGP_CAROLIEiJ_G0017417	Tsen54	100	92.000	Mus_caroli
ENSRNOG00000004598	Tsen54	100	92.762	ENSMUSG00000020781	Tsen54	100	92.762	Mus_musculus
ENSRNOG00000004598	Tsen54	100	92.571	MGP_PahariEiJ_G0018547	Tsen54	100	92.571	Mus_pahari
ENSRNOG00000004598	Tsen54	100	92.952	MGP_SPRETEiJ_G0018262	Tsen54	100	92.952	Mus_spretus
ENSRNOG00000004598	Tsen54	100	78.719	ENSMPUG00000013870	TSEN54	100	79.096	Mustela_putorius_furo
ENSRNOG00000004598	Tsen54	100	75.330	ENSMLUG00000015298	TSEN54	100	75.895	Myotis_lucifugus
ENSRNOG00000004598	Tsen54	100	85.333	ENSNGAG00000015673	Tsen54	100	85.333	Nannospalax_galili
ENSRNOG00000004598	Tsen54	89	62.128	ENSMEUG00000011908	TSEN54	100	62.128	Notamacropus_eugenii
ENSRNOG00000004598	Tsen54	100	72.865	ENSOPRG00000012513	TSEN54	100	72.865	Ochotona_princeps
ENSRNOG00000004598	Tsen54	97	45.665	ENSONIG00000009543	tsen54	96	45.665	Oreochromis_niloticus
ENSRNOG00000004598	Tsen54	99	71.295	ENSOCUG00000009875	TSEN54	99	72.608	Oryctolagus_cuniculus
ENSRNOG00000004598	Tsen54	97	45.490	ENSORLG00000000852	tsen54	97	45.490	Oryzias_latipes
ENSRNOG00000004598	Tsen54	97	45.365	ENSORLG00020018221	tsen54	97	45.562	Oryzias_latipes_hni
ENSRNOG00000004598	Tsen54	97	44.576	ENSORLG00015009413	tsen54	98	45.562	Oryzias_latipes_hsok
ENSRNOG00000004598	Tsen54	97	45.957	ENSOMEG00000014402	tsen54	94	45.957	Oryzias_melastigma
ENSRNOG00000004598	Tsen54	100	75.665	ENSOGAG00000001442	TSEN54	100	75.665	Otolemur_garnettii
ENSRNOG00000004598	Tsen54	86	74.561	ENSOARG00000010361	TSEN54	100	75.492	Ovis_aries
ENSRNOG00000004598	Tsen54	94	80.645	ENSPPAG00000043519	TSEN54	100	80.645	Pan_paniscus
ENSRNOG00000004598	Tsen54	100	79.849	ENSPPRG00000009162	TSEN54	100	80.414	Panthera_pardus
ENSRNOG00000004598	Tsen54	86	78.540	ENSPTIG00000019312	TSEN54	96	78.982	Panthera_tigris_altaica
ENSRNOG00000004598	Tsen54	100	81.369	ENSPTRG00000009646	TSEN54	100	81.749	Pan_troglodytes
ENSRNOG00000004598	Tsen54	99	80.762	ENSPANG00000020133	TSEN54	99	81.143	Papio_anubis
ENSRNOG00000004598	Tsen54	97	45.405	ENSPKIG00000023018	tsen54	100	45.805	Paramormyrops_kingsleyae
ENSRNOG00000004598	Tsen54	80	52.414	ENSPSIG00000012807	TSEN54	99	52.414	Pelodiscus_sinensis
ENSRNOG00000004598	Tsen54	92	35.510	ENSPMGG00000019578	tsen54	99	35.510	Periophthalmus_magnuspinnatus
ENSRNOG00000004598	Tsen54	100	89.333	ENSPEMG00000014857	Tsen54	100	89.333	Peromyscus_maniculatus_bairdii
ENSRNOG00000004598	Tsen54	99	45.911	ENSPFOG00000022740	tsen54	99	46.468	Poecilia_formosa
ENSRNOG00000004598	Tsen54	99	45.981	ENSPLAG00000014847	tsen54	99	46.542	Poecilia_latipinna
ENSRNOG00000004598	Tsen54	99	45.794	ENSPMEG00000022876	tsen54	99	46.355	Poecilia_mexicana
ENSRNOG00000004598	Tsen54	99	45.966	ENSPREG00000013090	tsen54	99	46.529	Poecilia_reticulata
ENSRNOG00000004598	Tsen54	91	74.530	ENSPPYG00000008629	TSEN54	100	75.574	Pongo_abelii
ENSRNOG00000004598	Tsen54	95	67.787	ENSPCAG00000002093	TSEN54	99	67.787	Procavia_capensis
ENSRNOG00000004598	Tsen54	100	80.798	ENSPCOG00000027880	TSEN54	100	81.559	Propithecus_coquereli
ENSRNOG00000004598	Tsen54	100	79.849	ENSPVAG00000008446	TSEN54	100	79.849	Pteropus_vampyrus
ENSRNOG00000004598	Tsen54	92	45.400	ENSPNYG00000010217	tsen54	99	45.400	Pundamilia_nyererei
ENSRNOG00000004598	Tsen54	99	45.234	ENSPNAG00000003770	tsen54	98	45.234	Pygocentrus_nattereri
ENSRNOG00000004598	Tsen54	100	80.989	ENSRBIG00000043040	TSEN54	100	80.989	Rhinopithecus_bieti
ENSRNOG00000004598	Tsen54	100	80.798	ENSRROG00000030797	TSEN54	100	80.798	Rhinopithecus_roxellana
ENSRNOG00000004598	Tsen54	99	76.381	ENSSBOG00000013543	TSEN54	99	76.762	Saimiri_boliviensis_boliviensis
ENSRNOG00000004598	Tsen54	99	64.728	ENSSHAG00000018127	TSEN54	98	64.728	Sarcophilus_harrisii
ENSRNOG00000004598	Tsen54	81	42.568	ENSSFOG00015004093	tsen54	100	42.793	Scleropages_formosus
ENSRNOG00000004598	Tsen54	97	43.822	ENSSMAG00000012449	tsen54	99	43.178	Scophthalmus_maximus
ENSRNOG00000004598	Tsen54	97	46.498	ENSSDUG00000021506	tsen54	97	46.498	Seriola_dumerili
ENSRNOG00000004598	Tsen54	97	46.693	ENSSLDG00000016303	tsen54	97	46.693	Seriola_lalandi_dorsalis
ENSRNOG00000004598	Tsen54	83	51.802	ENSSPUG00000008988	TSEN54	100	51.802	Sphenodon_punctatus
ENSRNOG00000004598	Tsen54	92	45.082	ENSSPAG00000008098	-	99	45.082	Stegastes_partitus
ENSRNOG00000004598	Tsen54	80	40.706	ENSSPAG00000008047	tsen54	99	40.706	Stegastes_partitus
ENSRNOG00000004598	Tsen54	100	79.473	ENSSSCG00000036852	TSEN54	100	80.038	Sus_scrofa
ENSRNOG00000004598	Tsen54	86	53.084	ENSTGUG00000008548	TSEN54	100	53.084	Taeniopygia_guttata
ENSRNOG00000004598	Tsen54	97	45.490	ENSTRUG00000004230	tsen54	96	45.882	Takifugu_rubripes
ENSRNOG00000004598	Tsen54	98	45.437	ENSTNIG00000011281	tsen54	99	45.817	Tetraodon_nigroviridis
ENSRNOG00000004598	Tsen54	86	77.729	ENSTTRG00000015828	TSEN54	100	78.166	Tursiops_truncatus
ENSRNOG00000004598	Tsen54	81	76.512	ENSUAMG00000010045	TSEN54	100	76.512	Ursus_americanus
ENSRNOG00000004598	Tsen54	84	76.629	ENSUMAG00000008979	TSEN54	100	77.303	Ursus_maritimus
ENSRNOG00000004598	Tsen54	97	79.532	ENSVVUG00000011411	TSEN54	98	80.000	Vulpes_vulpes
ENSRNOG00000004598	Tsen54	98	49.427	ENSXETG00000012532	tsen54	99	71.667	Xenopus_tropicalis
ENSRNOG00000004598	Tsen54	97	43.640	ENSXCOG00000018245	tsen54	99	43.418	Xiphophorus_couchianus
ENSRNOG00000004598	Tsen54	99	46.629	ENSXMAG00000018818	tsen54	99	46.629	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000213	tRNA-intron endonuclease activity	21873635.	IBA	Function
GO:0000214	tRNA-intron endonuclease complex	21873635.	IBA	Component
GO:0000379	tRNA-type intron splice site recognition and cleavage	21873635.	IBA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	-	IEA	Process