EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004670 (Gene tree)
Gene ID: 289780
Gene Symbol: Ddx56
Alias: Ddx21|MGC93697|RH-II/Gu
Full Name: DEAD-box helicase 56
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 10801 bases
Position: chr14:86376808-86387608
Accession: 1303195
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000071407	ResIII	PF04851.15	9.4e-09	1	1
ENSRNOP00000071407	DEAD	PF00270.29	2.5e-40	1	1
ENSRNOP00000006642	DEAD	PF00270.29	4e-23	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000089384	-	1943	-	ENSRNOP00000071407	546 (aa)	-	A0A0G2K0E0
ENSRNOT00000006642	-	1939	XM_006251437	ENSRNOP00000006642	482 (aa)	XP_006251499	Q6AYT6

Gene Model

Click here to download ENSRNOG00000004670's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004670's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000004670	Ddx56	66	30.628	ENSRNOG00000057231	Ddx3	53	30.239
ENSRNOG00000004670	Ddx56	68	49.180	ENSRNOG00000006652	Ddx1	54	49.180
ENSRNOG00000004670	Ddx56	66	30.871	ENSRNOG00000002501	Ddx3y	52	30.239
ENSRNOG00000004670	Ddx56	73	30.273	ENSRNOG00000053932	Ddx6	74	30.769
ENSRNOG00000004670	Ddx56	66	30.628	ENSRNOG00000023383	Ddx3x	52	30.263
ENSRNOG00000004670	Ddx56	86	32.766	ENSRNOG00000007838	Ddx47	90	32.976
ENSRNOG00000004670	Ddx56	72	31.762	ENSRNOG00000002612	Ddx52	61	31.266
ENSRNOG00000004670	Ddx56	78	31.640	ENSRNOG00000008081	Ddx27	52	31.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004670	Ddx56	100	91.408	ENSG00000136271	DDX56	100	94.595	Homo_sapiens
ENSRNOG00000004670	Ddx56	98	63.718	ENSAPOG00000017113	ddx56	98	63.899	Acanthochromis_polyacanthus
ENSRNOG00000004670	Ddx56	100	87.729	ENSAMEG00000017711	DDX56	100	87.729	Ailuropoda_melanoleuca
ENSRNOG00000004670	Ddx56	92	59.566	ENSACIG00000013747	ddx56	98	66.851	Amphilophus_citrinellus
ENSRNOG00000004670	Ddx56	88	65.708	ENSAOCG00000015447	-	87	66.324	Amphiprion_ocellaris
ENSRNOG00000004670	Ddx56	90	66.000	ENSAOCG00000018059	ddx56	93	66.600	Amphiprion_ocellaris
ENSRNOG00000004670	Ddx56	99	63.799	ENSAPEG00000007267	ddx56	99	63.799	Amphiprion_percula
ENSRNOG00000004670	Ddx56	98	63.555	ENSATEG00000005279	ddx56	98	64.158	Anabas_testudineus
ENSRNOG00000004670	Ddx56	98	63.538	ENSACLG00000020113	ddx56	98	64.674	Astatotilapia_calliptera
ENSRNOG00000004670	Ddx56	98	59.677	ENSAMXG00000019357	ddx56	99	60.250	Astyanax_mexicanus
ENSRNOG00000004670	Ddx56	100	91.209	ENSBTAG00000010602	DDX56	100	91.209	Bos_taurus
ENSRNOG00000004670	Ddx56	98	40.966	WBGene00016073	C24H12.4	86	40.966	Caenorhabditis_elegans
ENSRNOG00000004670	Ddx56	100	90.494	ENSCJAG00000012233	DDX56	100	90.494	Callithrix_jacchus
ENSRNOG00000004670	Ddx56	93	86.771	ENSCAFG00000029295	DDX56	100	86.771	Canis_familiaris
ENSRNOG00000004670	Ddx56	100	84.799	ENSCAFG00020019695	DDX56	100	84.799	Canis_lupus_dingo
ENSRNOG00000004670	Ddx56	100	91.209	ENSCHIG00000014261	DDX56	100	91.209	Capra_hircus
ENSRNOG00000004670	Ddx56	100	90.494	ENSTSYG00000008048	DDX56	100	91.042	Carlito_syrichta
ENSRNOG00000004670	Ddx56	98	87.738	ENSCAPG00000006286	DDX56	100	87.738	Cavia_aperea
ENSRNOG00000004670	Ddx56	100	88.300	ENSCPOG00000003359	DDX56	100	88.300	Cavia_porcellus
ENSRNOG00000004670	Ddx56	100	89.945	ENSCCAG00000025303	DDX56	100	90.494	Cebus_capucinus
ENSRNOG00000004670	Ddx56	100	91.392	ENSCATG00000039389	DDX56	100	91.392	Cercocebus_atys
ENSRNOG00000004670	Ddx56	100	89.560	ENSCLAG00000007666	DDX56	100	89.560	Chinchilla_lanigera
ENSRNOG00000004670	Ddx56	100	91.408	ENSCSAG00000015636	DDX56	100	91.408	Chlorocebus_sabaeus
ENSRNOG00000004670	Ddx56	97	68.382	ENSCPBG00000024556	DDX56	97	68.382	Chrysemys_picta_bellii
ENSRNOG00000004670	Ddx56	92	55.969	ENSCING00000005185	-	98	55.992	Ciona_intestinalis
ENSRNOG00000004670	Ddx56	91	53.861	ENSCSAVG00000011266	-	99	54.150	Ciona_savignyi
ENSRNOG00000004670	Ddx56	100	91.225	ENSCANG00000028187	DDX56	100	91.225	Colobus_angolensis_palliatus
ENSRNOG00000004670	Ddx56	100	94.689	ENSCGRG00001019019	Ddx56	100	94.689	Cricetulus_griseus_chok1gshd
ENSRNOG00000004670	Ddx56	100	94.689	ENSCGRG00000011870	Ddx56	100	94.689	Cricetulus_griseus_crigri
ENSRNOG00000004670	Ddx56	98	63.375	ENSCSEG00000008368	ddx56	99	63.734	Cynoglossus_semilaevis
ENSRNOG00000004670	Ddx56	98	64.610	ENSCVAG00000006499	ddx56	98	65.517	Cyprinodon_variegatus
ENSRNOG00000004670	Ddx56	99	61.896	ENSDARG00000020913	ddx56	99	63.148	Danio_rerio
ENSRNOG00000004670	Ddx56	98	85.593	ENSDNOG00000036526	DDX56	99	85.593	Dasypus_novemcinctus
ENSRNOG00000004670	Ddx56	95	47.664	FBgn0001565	Hlc	94	47.664	Drosophila_melanogaster
ENSRNOG00000004670	Ddx56	83	78.818	ENSETEG00000002969	-	83	78.818	Echinops_telfairi
ENSRNOG00000004670	Ddx56	89	60.698	ENSETEG00000019559	-	100	59.158	Echinops_telfairi
ENSRNOG00000004670	Ddx56	98	58.453	ENSEBUG00000009986	ddx56	99	58.813	Eptatretus_burgeri
ENSRNOG00000004670	Ddx56	100	90.842	ENSEASG00005017795	DDX56	100	90.842	Equus_asinus_asinus
ENSRNOG00000004670	Ddx56	100	90.659	ENSECAG00000019897	DDX56	100	90.659	Equus_caballus
ENSRNOG00000004670	Ddx56	98	88.347	ENSEEUG00000004849	DDX56	100	88.347	Erinaceus_europaeus
ENSRNOG00000004670	Ddx56	97	64.945	ENSELUG00000004150	ddx56	97	65.498	Esox_lucius
ENSRNOG00000004670	Ddx56	99	87.339	ENSFCAG00000010261	DDX56	99	87.523	Felis_catus
ENSRNOG00000004670	Ddx56	100	88.462	ENSFDAG00000007128	DDX56	100	88.462	Fukomys_damarensis
ENSRNOG00000004670	Ddx56	98	64.007	ENSFHEG00000018008	ddx56	95	67.339	Fundulus_heteroclitus
ENSRNOG00000004670	Ddx56	97	61.639	ENSGAFG00000006906	ddx56	97	61.639	Gambusia_affinis
ENSRNOG00000004670	Ddx56	99	66.667	ENSGAGG00000006789	DDX56	91	71.206	Gopherus_agassizii
ENSRNOG00000004670	Ddx56	100	91.408	ENSGGOG00000012031	DDX56	100	91.408	Gorilla_gorilla
ENSRNOG00000004670	Ddx56	92	62.231	ENSHBUG00000015246	ddx56	97	60.332	Haplochromis_burtoni
ENSRNOG00000004670	Ddx56	100	89.927	ENSHGLG00000017271	DDX56	100	89.927	Heterocephalus_glaber_female
ENSRNOG00000004670	Ddx56	100	89.927	ENSHGLG00100015731	DDX56	100	89.927	Heterocephalus_glaber_male
ENSRNOG00000004670	Ddx56	97	63.704	ENSHCOG00000001685	ddx56	97	63.704	Hippocampus_comes
ENSRNOG00000004670	Ddx56	99	61.210	ENSIPUG00000006602	ddx56	98	61.566	Ictalurus_punctatus
ENSRNOG00000004670	Ddx56	100	89.927	ENSSTOG00000000464	DDX56	100	89.927	Ictidomys_tridecemlineatus
ENSRNOG00000004670	Ddx56	99	90.775	ENSJJAG00000014269	Ddx56	100	90.775	Jaculus_jaculus
ENSRNOG00000004670	Ddx56	98	64.014	ENSKMAG00000016611	ddx56	98	64.557	Kryptolebias_marmoratus
ENSRNOG00000004670	Ddx56	98	63.039	ENSLBEG00000026281	ddx56	98	63.227	Labrus_bergylta
ENSRNOG00000004670	Ddx56	97	66.667	ENSLACG00000015551	DDX56	97	67.031	Latimeria_chalumnae
ENSRNOG00000004670	Ddx56	99	62.544	ENSLOCG00000015185	ddx56	99	63.458	Lepisosteus_oculatus
ENSRNOG00000004670	Ddx56	99	88.745	ENSLAFG00000018206	DDX56	99	88.745	Loxodonta_africana
ENSRNOG00000004670	Ddx56	100	91.575	ENSMFAG00000041001	DDX56	100	91.575	Macaca_fascicularis
ENSRNOG00000004670	Ddx56	100	91.392	ENSMMUG00000002645	DDX56	100	91.392	Macaca_mulatta
ENSRNOG00000004670	Ddx56	100	91.758	ENSMNEG00000028492	DDX56	100	91.758	Macaca_nemestrina
ENSRNOG00000004670	Ddx56	100	91.392	ENSMLEG00000043591	DDX56	100	91.392	Mandrillus_leucophaeus
ENSRNOG00000004670	Ddx56	97	64.299	ENSMAMG00000007776	ddx56	98	64.845	Mastacembelus_armatus
ENSRNOG00000004670	Ddx56	98	63.538	ENSMZEG00005009813	ddx56	98	64.674	Maylandia_zebra
ENSRNOG00000004670	Ddx56	100	91.225	ENSMICG00000005550	DDX56	100	91.225	Microcebus_murinus
ENSRNOG00000004670	Ddx56	100	95.055	ENSMOCG00000016782	Ddx56	100	95.055	Microtus_ochrogaster
ENSRNOG00000004670	Ddx56	92	65.953	ENSMMOG00000009654	ddx56	95	66.471	Mola_mola
ENSRNOG00000004670	Ddx56	100	73.960	ENSMODG00000016137	DDX56	100	73.960	Monodelphis_domestica
ENSRNOG00000004670	Ddx56	68	63.807	ENSMALG00000016910	ddx56	99	63.807	Monopterus_albus
ENSRNOG00000004670	Ddx56	100	96.154	MGP_CAROLIEiJ_G0016069	Ddx56	100	96.154	Mus_caroli
ENSRNOG00000004670	Ddx56	100	96.520	ENSMUSG00000004393	Ddx56	100	96.520	Mus_musculus
ENSRNOG00000004670	Ddx56	100	97.436	MGP_PahariEiJ_G0016822	Ddx56	100	97.436	Mus_pahari
ENSRNOG00000004670	Ddx56	100	96.520	MGP_SPRETEiJ_G0016911	Ddx56	100	96.520	Mus_spretus
ENSRNOG00000004670	Ddx56	100	86.996	ENSMPUG00000018196	DDX56	88	86.996	Mustela_putorius_furo
ENSRNOG00000004670	Ddx56	100	89.377	ENSMLUG00000003509	DDX56	100	89.560	Myotis_lucifugus
ENSRNOG00000004670	Ddx56	100	91.575	ENSNGAG00000018785	Ddx56	100	91.575	Nannospalax_galili
ENSRNOG00000004670	Ddx56	92	64.286	ENSNBRG00000002656	ddx56	93	63.938	Neolamprologus_brichardi
ENSRNOG00000004670	Ddx56	100	91.956	ENSNLEG00000003816	DDX56	100	91.956	Nomascus_leucogenys
ENSRNOG00000004670	Ddx56	91	75.806	ENSMEUG00000006788	DDX56	100	75.806	Notamacropus_eugenii
ENSRNOG00000004670	Ddx56	100	88.300	ENSOPRG00000000292	-	100	88.300	Ochotona_princeps
ENSRNOG00000004670	Ddx56	69	92.800	ENSODEG00000014807	DDX56	100	92.800	Octodon_degus
ENSRNOG00000004670	Ddx56	98	65.549	ENSONIG00000011509	ddx56	98	65.549	Oreochromis_niloticus
ENSRNOG00000004670	Ddx56	100	66.393	ENSOANG00000006320	-	100	69.418	Ornithorhynchus_anatinus
ENSRNOG00000004670	Ddx56	74	69.479	ENSOANG00000015987	-	95	69.479	Ornithorhynchus_anatinus
ENSRNOG00000004670	Ddx56	56	80.669	ENSOANG00000010592	-	99	80.669	Ornithorhynchus_anatinus
ENSRNOG00000004670	Ddx56	100	87.751	ENSOCUG00000022918	DDX56	100	88.483	Oryctolagus_cuniculus
ENSRNOG00000004670	Ddx56	99	64.516	ENSORLG00000001434	ddx56	99	64.516	Oryzias_latipes
ENSRNOG00000004670	Ddx56	98	64.855	ENSORLG00020015718	ddx56	95	64.855	Oryzias_latipes_hni
ENSRNOG00000004670	Ddx56	98	65.209	ENSORLG00015003004	ddx56	94	65.209	Oryzias_latipes_hsok
ENSRNOG00000004670	Ddx56	98	65.154	ENSOMEG00000022072	ddx56	98	65.336	Oryzias_melastigma
ENSRNOG00000004670	Ddx56	100	89.214	ENSOGAG00000009981	DDX56	100	89.214	Otolemur_garnettii
ENSRNOG00000004670	Ddx56	100	91.392	ENSOARG00000015240	DDX56	100	91.392	Ovis_aries
ENSRNOG00000004670	Ddx56	100	75.464	ENSPPAG00000031263	-	100	73.406	Pan_paniscus
ENSRNOG00000004670	Ddx56	100	87.410	ENSPPAG00000029147	DDX56	100	87.410	Pan_paniscus
ENSRNOG00000004670	Ddx56	99	86.264	ENSPPRG00000014594	DDX56	99	86.813	Panthera_pardus
ENSRNOG00000004670	Ddx56	98	84.713	ENSPTIG00000019500	DDX56	92	84.926	Panthera_tigris_altaica
ENSRNOG00000004670	Ddx56	100	75.410	ENSPTRG00000052765	-	100	75.483	Pan_troglodytes
ENSRNOG00000004670	Ddx56	100	91.042	ENSPTRG00000019147	DDX56	100	91.042	Pan_troglodytes
ENSRNOG00000004670	Ddx56	100	91.392	ENSPANG00000002446	DDX56	100	91.392	Papio_anubis
ENSRNOG00000004670	Ddx56	98	63.521	ENSPKIG00000018998	ddx56	98	63.521	Paramormyrops_kingsleyae
ENSRNOG00000004670	Ddx56	93	65.243	ENSPMGG00000017421	ddx56	96	65.243	Periophthalmus_magnuspinnatus
ENSRNOG00000004670	Ddx56	100	82.065	ENSPCIG00000009336	DDX56	100	82.065	Phascolarctos_cinereus
ENSRNOG00000004670	Ddx56	97	63.736	ENSPFOG00000018658	ddx56	97	63.985	Poecilia_formosa
ENSRNOG00000004670	Ddx56	97	63.736	ENSPLAG00000019208	ddx56	97	64.218	Poecilia_latipinna
ENSRNOG00000004670	Ddx56	97	63.736	ENSPMEG00000001775	ddx56	97	63.985	Poecilia_mexicana
ENSRNOG00000004670	Ddx56	97	64.739	ENSPREG00000015142	ddx56	97	64.739	Poecilia_reticulata
ENSRNOG00000004670	Ddx56	100	91.956	ENSPPYG00000017591	DDX56	100	91.956	Pongo_abelii
ENSRNOG00000004670	Ddx56	100	87.578	ENSPCAG00000011499	DDX56	100	88.235	Procavia_capensis
ENSRNOG00000004670	Ddx56	100	91.408	ENSPCOG00000024864	DDX56	100	91.408	Propithecus_coquereli
ENSRNOG00000004670	Ddx56	88	92.558	ENSPVAG00000000791	DDX56	88	92.558	Pteropus_vampyrus
ENSRNOG00000004670	Ddx56	98	63.357	ENSPNYG00000019212	ddx56	98	64.493	Pundamilia_nyererei
ENSRNOG00000004670	Ddx56	98	62.639	ENSPNAG00000025446	ddx56	99	62.825	Pygocentrus_nattereri
ENSRNOG00000004670	Ddx56	100	91.408	ENSRBIG00000030140	DDX56	100	91.408	Rhinopithecus_bieti
ENSRNOG00000004670	Ddx56	100	91.042	ENSRROG00000044428	DDX56	100	91.042	Rhinopithecus_roxellana
ENSRNOG00000004670	Ddx56	97	42.857	YLR276C	-	98	43.029	Saccharomyces_cerevisiae
ENSRNOG00000004670	Ddx56	100	90.311	ENSSBOG00000034339	DDX56	100	90.311	Saimiri_boliviensis_boliviensis
ENSRNOG00000004670	Ddx56	97	82.203	ENSSHAG00000016615	DDX56	99	82.203	Sarcophilus_harrisii
ENSRNOG00000004670	Ddx56	98	65.146	ENSSFOG00015012795	ddx56	97	65.146	Scleropages_formosus
ENSRNOG00000004670	Ddx56	98	63.345	ENSSMAG00000011280	ddx56	99	64.057	Scophthalmus_maximus
ENSRNOG00000004670	Ddx56	98	62.883	ENSSDUG00000023597	ddx56	98	63.604	Seriola_dumerili
ENSRNOG00000004670	Ddx56	98	62.883	ENSSLDG00000018369	ddx56	98	63.604	Seriola_lalandi_dorsalis
ENSRNOG00000004670	Ddx56	75	86.533	ENSSARG00000014363	DDX56	79	85.042	Sorex_araneus
ENSRNOG00000004670	Ddx56	99	66.606	ENSSPUG00000000784	DDX56	96	66.969	Sphenodon_punctatus
ENSRNOG00000004670	Ddx56	92	67.123	ENSSPAG00000009392	ddx56	95	67.311	Stegastes_partitus
ENSRNOG00000004670	Ddx56	100	90.328	ENSSSCG00000016745	DDX56	100	90.328	Sus_scrofa
ENSRNOG00000004670	Ddx56	99	63.352	ENSTRUG00000018623	ddx56	99	63.352	Takifugu_rubripes
ENSRNOG00000004670	Ddx56	98	61.896	ENSTNIG00000013593	ddx56	98	62.075	Tetraodon_nigroviridis
ENSRNOG00000004670	Ddx56	100	88.645	ENSTBEG00000007119	DDX56	100	88.645	Tupaia_belangeri
ENSRNOG00000004670	Ddx56	98	88.771	ENSTTRG00000010552	DDX56	100	88.771	Tursiops_truncatus
ENSRNOG00000004670	Ddx56	100	88.095	ENSUAMG00000014194	DDX56	100	88.095	Ursus_americanus
ENSRNOG00000004670	Ddx56	100	88.095	ENSUMAG00000009666	DDX56	100	88.095	Ursus_maritimus
ENSRNOG00000004670	Ddx56	100	86.813	ENSVVUG00000011905	DDX56	100	86.813	Vulpes_vulpes
ENSRNOG00000004670	Ddx56	98	64.738	ENSXETG00000019000	ddx56	99	65.642	Xenopus_tropicalis
ENSRNOG00000004670	Ddx56	97	63.653	ENSXCOG00000017413	ddx56	97	63.653	Xiphophorus_couchianus
ENSRNOG00000004670	Ddx56	97	63.670	ENSXMAG00000018749	ddx56	97	63.670	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0010976	positive regulation of neuron projection development	11823437.	IMP	Process