EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004700 (Gene tree)
Gene ID: 296219
Gene Symbol: Nxt1
Alias: LOC296219
Full Name: nuclear transport factor 2-like export factor 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 2921 bases
Position: chr3:142993658-142996578
Accession: 1309327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006205	NTF2	PF02136.20	3.2e-30	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000006205	-	852	-	ENSRNOP00000006205	140 (aa)	-	B2RZ65

Gene Model

Click here to download ENSRNOG00000004700's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03013	RNA transport	KEGG
rno03015	mRNA surveillance pathway	KEGG
rno05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004700's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000004700	Nxt1	99	74.638	ENSRNOG00000019168	Nxt2	80	74.638

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004700	Nxt1	100	97.857	ENSG00000132661	NXT1	100	97.857	Homo_sapiens
ENSRNOG00000004700	Nxt1	100	98.571	ENSAMEG00000018729	NXT1	100	98.571	Ailuropoda_melanoleuca
ENSRNOG00000004700	Nxt1	100	98.571	ENSANAG00000010003	NXT1	100	98.571	Aotus_nancymaae
ENSRNOG00000004700	Nxt1	99	98.561	ENSBTAG00000004993	NXT1	99	98.561	Bos_taurus
ENSRNOG00000004700	Nxt1	100	98.571	ENSCJAG00000044836	NXT1	100	98.571	Callithrix_jacchus
ENSRNOG00000004700	Nxt1	100	97.143	ENSTSYG00000007592	NXT1	100	97.143	Carlito_syrichta
ENSRNOG00000004700	Nxt1	100	96.429	ENSCAPG00000012780	NXT1	100	96.429	Cavia_aperea
ENSRNOG00000004700	Nxt1	100	96.429	ENSCPOG00000008817	NXT1	100	96.429	Cavia_porcellus
ENSRNOG00000004700	Nxt1	100	98.571	ENSCCAG00000015478	NXT1	100	98.571	Cebus_capucinus
ENSRNOG00000004700	Nxt1	100	97.857	ENSCATG00000019026	NXT1	100	97.857	Cercocebus_atys
ENSRNOG00000004700	Nxt1	100	97.143	ENSCLAG00000012493	NXT1	100	97.143	Chinchilla_lanigera
ENSRNOG00000004700	Nxt1	100	97.857	ENSCSAG00000018678	NXT1	100	97.857	Chlorocebus_sabaeus
ENSRNOG00000004700	Nxt1	100	92.857	ENSCHOG00000007142	NXT1	100	92.857	Choloepus_hoffmanni
ENSRNOG00000004700	Nxt1	100	97.857	ENSCANG00000001309	NXT1	100	97.857	Colobus_angolensis_palliatus
ENSRNOG00000004700	Nxt1	100	97.143	ENSCGRG00001007062	-	100	97.143	Cricetulus_griseus_chok1gshd
ENSRNOG00000004700	Nxt1	100	78.322	ENSCGRG00001014411	-	100	78.322	Cricetulus_griseus_chok1gshd
ENSRNOG00000004700	Nxt1	100	97.143	ENSCGRG00000012771	-	100	97.143	Cricetulus_griseus_crigri
ENSRNOG00000004700	Nxt1	100	78.322	ENSCGRG00000005554	-	100	78.322	Cricetulus_griseus_crigri
ENSRNOG00000004700	Nxt1	99	57.857	ENSDNOG00000040022	-	98	57.857	Dasypus_novemcinctus
ENSRNOG00000004700	Nxt1	100	92.857	ENSDNOG00000015112	-	100	92.857	Dasypus_novemcinctus
ENSRNOG00000004700	Nxt1	100	99.286	ENSDORG00000024690	Nxt1	100	99.286	Dipodomys_ordii
ENSRNOG00000004700	Nxt1	100	97.143	ENSEASG00005002553	NXT1	100	97.143	Equus_asinus_asinus
ENSRNOG00000004700	Nxt1	100	97.143	ENSECAG00000035032	NXT1	100	97.143	Equus_caballus
ENSRNOG00000004700	Nxt1	99	95.652	ENSEEUG00000013818	NXT1	99	95.652	Erinaceus_europaeus
ENSRNOG00000004700	Nxt1	100	99.286	ENSFCAG00000006482	NXT1	100	99.286	Felis_catus
ENSRNOG00000004700	Nxt1	99	97.842	ENSFDAG00000012027	-	99	97.842	Fukomys_damarensis
ENSRNOG00000004700	Nxt1	96	80.741	ENSFDAG00000006553	-	97	80.741	Fukomys_damarensis
ENSRNOG00000004700	Nxt1	76	83.019	ENSGGOG00000022722	-	80	83.019	Gorilla_gorilla
ENSRNOG00000004700	Nxt1	100	97.857	ENSGGOG00000012539	-	100	97.857	Gorilla_gorilla
ENSRNOG00000004700	Nxt1	100	97.857	ENSHGLG00000007882	NXT1	100	97.857	Heterocephalus_glaber_female
ENSRNOG00000004700	Nxt1	100	97.857	ENSHGLG00100015157	NXT1	100	97.857	Heterocephalus_glaber_male
ENSRNOG00000004700	Nxt1	100	98.571	ENSSTOG00000026331	NXT1	100	98.571	Ictidomys_tridecemlineatus
ENSRNOG00000004700	Nxt1	100	80.714	ENSJJAG00000013926	-	100	80.714	Jaculus_jaculus
ENSRNOG00000004700	Nxt1	100	99.286	ENSJJAG00000012022	-	100	99.286	Jaculus_jaculus
ENSRNOG00000004700	Nxt1	100	95.714	ENSLAFG00000029098	NXT1	100	95.714	Loxodonta_africana
ENSRNOG00000004700	Nxt1	100	97.857	ENSMFAG00000019296	NXT1	100	97.857	Macaca_fascicularis
ENSRNOG00000004700	Nxt1	100	97.857	ENSMMUG00000022386	NXT1	100	97.857	Macaca_mulatta
ENSRNOG00000004700	Nxt1	100	97.857	ENSMNEG00000027745	NXT1	100	97.857	Macaca_nemestrina
ENSRNOG00000004700	Nxt1	100	97.857	ENSMLEG00000027268	NXT1	100	97.857	Mandrillus_leucophaeus
ENSRNOG00000004700	Nxt1	100	97.143	ENSMAUG00000004141	Nxt1	100	97.143	Mesocricetus_auratus
ENSRNOG00000004700	Nxt1	100	97.143	ENSMICG00000044853	NXT1	100	97.143	Microcebus_murinus
ENSRNOG00000004700	Nxt1	100	95.000	ENSMOCG00000018712	Nxt1	100	95.000	Microtus_ochrogaster
ENSRNOG00000004700	Nxt1	100	97.857	MGP_CAROLIEiJ_G0024408	Nxt1	100	97.857	Mus_caroli
ENSRNOG00000004700	Nxt1	100	97.857	ENSMUSG00000036992	Nxt1	100	97.857	Mus_musculus
ENSRNOG00000004700	Nxt1	100	96.429	MGP_PahariEiJ_G0025851	Nxt1	100	96.429	Mus_pahari
ENSRNOG00000004700	Nxt1	100	97.857	MGP_SPRETEiJ_G0025326	Nxt1	100	97.857	Mus_spretus
ENSRNOG00000004700	Nxt1	100	99.286	ENSMPUG00000019260	NXT1	100	99.286	Mustela_putorius_furo
ENSRNOG00000004700	Nxt1	100	98.571	ENSMLUG00000006881	NXT1	100	98.571	Myotis_lucifugus
ENSRNOG00000004700	Nxt1	100	99.286	ENSNGAG00000000803	Nxt1	100	99.286	Nannospalax_galili
ENSRNOG00000004700	Nxt1	100	95.714	ENSOPRG00000006167	NXT1	100	95.714	Ochotona_princeps
ENSRNOG00000004700	Nxt1	100	96.429	ENSODEG00000019900	NXT1	100	96.429	Octodon_degus
ENSRNOG00000004700	Nxt1	100	97.143	ENSOCUG00000025924	NXT1	100	97.143	Oryctolagus_cuniculus
ENSRNOG00000004700	Nxt1	100	97.857	ENSOGAG00000000717	NXT1	99	97.857	Otolemur_garnettii
ENSRNOG00000004700	Nxt1	100	97.857	ENSPPAG00000020479	NXT1	100	97.857	Pan_paniscus
ENSRNOG00000004700	Nxt1	100	99.286	ENSPPRG00000021392	NXT1	100	99.286	Panthera_pardus
ENSRNOG00000004700	Nxt1	100	99.286	ENSPTIG00000003788	NXT1	100	99.286	Panthera_tigris_altaica
ENSRNOG00000004700	Nxt1	100	97.857	ENSPTRG00000013319	NXT1	100	97.857	Pan_troglodytes
ENSRNOG00000004700	Nxt1	100	97.857	ENSPANG00000023254	NXT1	100	97.857	Papio_anubis
ENSRNOG00000004700	Nxt1	100	95.714	ENSPEMG00000010397	Nxt1	100	95.714	Peromyscus_maniculatus_bairdii
ENSRNOG00000004700	Nxt1	100	97.857	ENSPPYG00000010765	NXT1	100	97.857	Pongo_abelii
ENSRNOG00000004700	Nxt1	100	96.429	ENSPCAG00000009373	-	100	96.429	Procavia_capensis
ENSRNOG00000004700	Nxt1	100	99.286	ENSPCOG00000025624	NXT1	99	99.286	Propithecus_coquereli
ENSRNOG00000004700	Nxt1	100	98.571	ENSPVAG00000014055	NXT1	100	98.571	Pteropus_vampyrus
ENSRNOG00000004700	Nxt1	100	97.857	ENSRBIG00000021433	NXT1	100	97.857	Rhinopithecus_bieti
ENSRNOG00000004700	Nxt1	100	97.857	ENSRROG00000026657	NXT1	100	97.857	Rhinopithecus_roxellana
ENSRNOG00000004700	Nxt1	100	98.571	ENSSBOG00000036378	NXT1	100	98.571	Saimiri_boliviensis_boliviensis
ENSRNOG00000004700	Nxt1	100	96.429	ENSSARG00000007842	NXT1	100	96.429	Sorex_araneus
ENSRNOG00000004700	Nxt1	99	96.403	ENSSSCG00000007119	NXT1	99	96.403	Sus_scrofa
ENSRNOG00000004700	Nxt1	100	98.571	ENSTBEG00000012251	NXT1	100	98.571	Tupaia_belangeri
ENSRNOG00000004700	Nxt1	99	99.281	ENSTTRG00000011348	NXT1	99	99.281	Tursiops_truncatus
ENSRNOG00000004700	Nxt1	100	98.571	ENSUAMG00000021860	NXT1	100	98.571	Ursus_americanus
ENSRNOG00000004700	Nxt1	100	98.571	ENSUMAG00000004062	NXT1	100	98.571	Ursus_maritimus
ENSRNOG00000004700	Nxt1	100	99.286	ENSVVUG00000012091	NXT1	100	99.286	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005643	nuclear pore	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006405	RNA export from nucleus	-	IEA	Process
GO:0006405	RNA export from nucleus	-	ISO	Process
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006611	protein export from nucleus	-	IEA	Process
GO:0006611	protein export from nucleus	-	ISO	Process
GO:0006913	nucleocytoplasmic transport	21873635.	IBA	Process
GO:0008536	Ran GTPase binding	-	IEA	Function
GO:0008536	Ran GTPase binding	-	ISO	Function
GO:0008565	protein transporter activity	21873635.	IBA	Function
GO:0044613	nuclear pore central transport channel	21873635.	IBA	Component