EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004735 (Gene tree)
Gene ID: 311508
Gene Symbol: Gzf1
Alias: LOC311508|RGD1562321|Zfp336
Full Name: GDNF-inducible zinc finger protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 12109 bases
Position: chr3:143003796-143015904
Accession: 1562321
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006287	zf-C2H2	PF00096.26	1.7e-34	1	6
ENSRNOP00000006287	zf-C2H2	PF00096.26	1.7e-34	2	6
ENSRNOP00000006287	zf-C2H2	PF00096.26	1.7e-34	3	6
ENSRNOP00000006287	zf-C2H2	PF00096.26	1.7e-34	4	6
ENSRNOP00000006287	zf-C2H2	PF00096.26	1.7e-34	5	6
ENSRNOP00000006287	zf-C2H2	PF00096.26	1.7e-34	6	6
ENSRNOP00000006287	zf-met	PF12874.7	4e-10	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000006287	-	4276	XM_006235153	ENSRNOP00000006287	707 (aa)	XP_006235215	D3ZUU2

Gene Model

Click here to download ENSRNOG00000004735's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004735's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000004735	Gzf1	60	37.349	ENSRNOG00000019382	Zbtb47	51	37.349
ENSRNOG00000004735	Gzf1	50	41.993	ENSRNOG00000052406	LOC102552527	85	49.010
ENSRNOG00000004735	Gzf1	58	36.800	ENSRNOG00000029980	Zbtb16	63	38.235
ENSRNOG00000004735	Gzf1	59	43.103	ENSRNOG00000028628	LOC100911196	80	38.500
ENSRNOG00000004735	Gzf1	57	40.081	ENSRNOG00000027923	Mynn	57	40.081
ENSRNOG00000004735	Gzf1	50	40.541	ENSRNOG00000014658	Zfp423	93	40.541
ENSRNOG00000004735	Gzf1	52	42.857	ENSRNOG00000016719	Zfp161	88	42.857
ENSRNOG00000004735	Gzf1	50	43.253	ENSRNOG00000043341	Zfp51	82	43.253
ENSRNOG00000004735	Gzf1	50	34.343	ENSRNOG00000013460	Zfp319	93	35.836
ENSRNOG00000004735	Gzf1	50	32.547	ENSRNOG00000016279	Zfp865	70	32.547

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004735	Gzf1	100	82.188	ENSG00000125812	GZF1	100	89.583	Homo_sapiens
ENSRNOG00000004735	Gzf1	85	49.669	ENSAPOG00000012930	GZF1	94	49.752	Acanthochromis_polyacanthus
ENSRNOG00000004735	Gzf1	100	75.314	ENSAMEG00000009853	GZF1	100	75.174	Ailuropoda_melanoleuca
ENSRNOG00000004735	Gzf1	89	46.166	ENSACIG00000004753	-	76	46.977	Amphilophus_citrinellus
ENSRNOG00000004735	Gzf1	84	49.505	ENSAOCG00000024275	GZF1	93	49.670	Amphiprion_ocellaris
ENSRNOG00000004735	Gzf1	97	42.629	ENSAPEG00000017195	GZF1	73	47.516	Amphiprion_percula
ENSRNOG00000004735	Gzf1	100	39.838	ENSATEG00000018374	GZF1	88	77.596	Anabas_testudineus
ENSRNOG00000004735	Gzf1	100	80.197	ENSANAG00000028240	GZF1	100	80.478	Aotus_nancymaae
ENSRNOG00000004735	Gzf1	98	44.730	ENSACLG00000025866	GZF1	83	43.962	Astatotilapia_calliptera
ENSRNOG00000004735	Gzf1	87	46.772	ENSAMXG00000017178	GZF1	84	46.457	Astyanax_mexicanus
ENSRNOG00000004735	Gzf1	100	80.337	ENSCJAG00000000733	GZF1	100	80.478	Callithrix_jacchus
ENSRNOG00000004735	Gzf1	100	79.014	ENSCAFG00000005142	GZF1	100	79.014	Canis_familiaris
ENSRNOG00000004735	Gzf1	55	83.636	ENSCAFG00020027463	-	100	83.636	Canis_lupus_dingo
ENSRNOG00000004735	Gzf1	100	76.050	ENSTSYG00000028054	GZF1	100	75.208	Carlito_syrichta
ENSRNOG00000004735	Gzf1	100	74.756	ENSCAPG00000002173	GZF1	100	74.616	Cavia_aperea
ENSRNOG00000004735	Gzf1	100	74.616	ENSCPOG00000010790	GZF1	100	74.477	Cavia_porcellus
ENSRNOG00000004735	Gzf1	100	80.056	ENSCCAG00000035601	GZF1	100	80.197	Cebus_capucinus
ENSRNOG00000004735	Gzf1	100	81.793	ENSCATG00000039279	GZF1	100	81.793	Cercocebus_atys
ENSRNOG00000004735	Gzf1	100	73.943	ENSCLAG00000014714	GZF1	100	73.670	Chinchilla_lanigera
ENSRNOG00000004735	Gzf1	100	81.767	ENSCSAG00000011054	GZF1	100	81.767	Chlorocebus_sabaeus
ENSRNOG00000004735	Gzf1	90	55.034	ENSCPBG00000023418	-	50	55.517	Chrysemys_picta_bellii
ENSRNOG00000004735	Gzf1	100	72.385	ENSCPBG00000023415	GZF1	100	72.106	Chrysemys_picta_bellii
ENSRNOG00000004735	Gzf1	100	81.742	ENSCANG00000041260	GZF1	100	81.882	Colobus_angolensis_palliatus
ENSRNOG00000004735	Gzf1	100	88.119	ENSCGRG00001003944	Gzf1	100	87.836	Cricetulus_griseus_chok1gshd
ENSRNOG00000004735	Gzf1	100	88.119	ENSCGRG00000012721	Gzf1	100	87.836	Cricetulus_griseus_crigri
ENSRNOG00000004735	Gzf1	80	77.391	ENSDNOG00000014290	GZF1	100	77.565	Dasypus_novemcinctus
ENSRNOG00000004735	Gzf1	100	81.907	ENSDORG00000011855	Gzf1	100	82.048	Dipodomys_ordii
ENSRNOG00000004735	Gzf1	64	75.093	ENSEBUG00000004858	GZF1	58	75.093	Eptatretus_burgeri
ENSRNOG00000004735	Gzf1	55	88.182	ENSECAG00000040045	-	100	88.182	Equus_caballus
ENSRNOG00000004735	Gzf1	83	48.148	ENSELUG00000013581	GZF1	86	48.799	Esox_lucius
ENSRNOG00000004735	Gzf1	100	79.469	ENSFCAG00000006484	GZF1	100	79.469	Felis_catus
ENSRNOG00000004735	Gzf1	93	75.624	ENSFDAG00000019468	GZF1	96	75.037	Fukomys_damarensis
ENSRNOG00000004735	Gzf1	89	45.865	ENSFHEG00000020498	GZF1	76	46.345	Fundulus_heteroclitus
ENSRNOG00000004735	Gzf1	87	47.826	ENSGMOG00000011017	GZF1	100	47.544	Gadus_morhua
ENSRNOG00000004735	Gzf1	100	73.222	ENSGALG00000053640	GZF1	100	72.943	Gallus_gallus
ENSRNOG00000004735	Gzf1	87	48.259	ENSGACG00000012415	GZF1	99	70.408	Gasterosteus_aculeatus
ENSRNOG00000004735	Gzf1	100	82.073	ENSGGOG00000023248	GZF1	100	82.048	Gorilla_gorilla
ENSRNOG00000004735	Gzf1	99	43.303	ENSHBUG00000016502	-	88	42.428	Haplochromis_burtoni
ENSRNOG00000004735	Gzf1	100	73.948	ENSHGLG00000008891	GZF1	100	73.978	Heterocephalus_glaber_female
ENSRNOG00000004735	Gzf1	100	73.948	ENSHGLG00100015117	GZF1	100	73.978	Heterocephalus_glaber_male
ENSRNOG00000004735	Gzf1	99	41.944	ENSHCOG00000004326	GZF1	57	52.723	Hippocampus_comes
ENSRNOG00000004735	Gzf1	100	81.653	ENSSTOG00000009820	GZF1	100	81.653	Ictidomys_tridecemlineatus
ENSRNOG00000004735	Gzf1	100	83.848	ENSJJAG00000008172	Gzf1	100	83.799	Jaculus_jaculus
ENSRNOG00000004735	Gzf1	50	71.579	ENSKMAG00000001453	-	60	71.579	Kryptolebias_marmoratus
ENSRNOG00000004735	Gzf1	100	81.549	ENSLAFG00000002458	GZF1	100	81.549	Loxodonta_africana
ENSRNOG00000004735	Gzf1	100	81.793	ENSMFAG00000042408	GZF1	100	81.793	Macaca_fascicularis
ENSRNOG00000004735	Gzf1	100	81.793	ENSMMUG00000022387	GZF1	100	81.793	Macaca_mulatta
ENSRNOG00000004735	Gzf1	100	81.907	ENSMNEG00000033117	GZF1	100	81.907	Macaca_nemestrina
ENSRNOG00000004735	Gzf1	100	81.907	ENSMLEG00000036831	GZF1	100	81.907	Mandrillus_leucophaeus
ENSRNOG00000004735	Gzf1	99	44.904	ENSMAMG00000011931	-	87	44.813	Mastacembelus_armatus
ENSRNOG00000004735	Gzf1	90	47.626	ENSMZEG00005010711	-	76	46.796	Maylandia_zebra
ENSRNOG00000004735	Gzf1	85	89.899	ENSMAUG00000019656	Gzf1	100	90.236	Mesocricetus_auratus
ENSRNOG00000004735	Gzf1	100	82.022	ENSMICG00000046070	GZF1	100	82.303	Microcebus_murinus
ENSRNOG00000004735	Gzf1	100	88.136	ENSMOCG00000017816	Gzf1	100	87.994	Microtus_ochrogaster
ENSRNOG00000004735	Gzf1	88	48.083	ENSMMOG00000004395	-	76	48.083	Mola_mola
ENSRNOG00000004735	Gzf1	100	74.059	ENSMODG00000006238	GZF1	100	80.769	Monodelphis_domestica
ENSRNOG00000004735	Gzf1	100	96.192	MGP_CAROLIEiJ_G0024409	Gzf1	100	96.192	Mus_caroli
ENSRNOG00000004735	Gzf1	100	97.030	ENSMUSG00000027439	Gzf1	100	97.030	Mus_musculus
ENSRNOG00000004735	Gzf1	100	96.328	MGP_PahariEiJ_G0025852	Gzf1	100	96.328	Mus_pahari
ENSRNOG00000004735	Gzf1	100	96.888	MGP_SPRETEiJ_G0025327	Gzf1	100	96.888	Mus_spretus
ENSRNOG00000004735	Gzf1	100	78.382	ENSMPUG00000001160	GZF1	89	78.073	Mustela_putorius_furo
ENSRNOG00000004735	Gzf1	98	77.603	ENSMLUG00000002194	GZF1	100	77.461	Myotis_lucifugus
ENSRNOG00000004735	Gzf1	100	86.197	ENSNGAG00000024012	Gzf1	100	85.915	Nannospalax_galili
ENSRNOG00000004735	Gzf1	85	42.857	ENSNBRG00000019987	GZF1	98	44.605	Neolamprologus_brichardi
ENSRNOG00000004735	Gzf1	100	81.461	ENSNLEG00000011565	GZF1	100	81.461	Nomascus_leucogenys
ENSRNOG00000004735	Gzf1	100	74.008	ENSOPRG00000004697	GZF1	100	75.758	Ochotona_princeps
ENSRNOG00000004735	Gzf1	100	71.972	ENSODEG00000013020	GZF1	100	72.394	Octodon_degus
ENSRNOG00000004735	Gzf1	87	48.950	ENSONIG00000000989	GZF1	100	48.718	Oreochromis_niloticus
ENSRNOG00000004735	Gzf1	51	41.636	ENSOANG00000022376	-	53	49.206	Ornithorhynchus_anatinus
ENSRNOG00000004735	Gzf1	100	78.310	ENSOCUG00000025214	GZF1	100	78.169	Oryctolagus_cuniculus
ENSRNOG00000004735	Gzf1	89	45.098	ENSORLG00000010006	-	76	46.190	Oryzias_latipes
ENSRNOG00000004735	Gzf1	100	80.591	ENSOGAG00000028389	GZF1	100	80.872	Otolemur_garnettii
ENSRNOG00000004735	Gzf1	100	82.022	ENSPPAG00000028487	GZF1	100	81.857	Pan_paniscus
ENSRNOG00000004735	Gzf1	100	79.469	ENSPPRG00000010040	GZF1	100	79.469	Panthera_pardus
ENSRNOG00000004735	Gzf1	100	79.609	ENSPTIG00000019328	GZF1	100	79.609	Panthera_tigris_altaica
ENSRNOG00000004735	Gzf1	100	81.767	ENSPTRG00000013320	GZF1	100	81.742	Pan_troglodytes
ENSRNOG00000004735	Gzf1	100	81.767	ENSPANG00000017419	GZF1	100	81.767	Papio_anubis
ENSRNOG00000004735	Gzf1	89	50.539	ENSPKIG00000003781	GZF1	79	49.846	Paramormyrops_kingsleyae
ENSRNOG00000004735	Gzf1	100	72.331	ENSPSIG00000014455	GZF1	100	72.385	Pelodiscus_sinensis
ENSRNOG00000004735	Gzf1	61	53.409	ENSPMGG00000003778	-	66	54.733	Periophthalmus_magnuspinnatus
ENSRNOG00000004735	Gzf1	100	89.675	ENSPEMG00000011285	Gzf1	100	89.675	Peromyscus_maniculatus_bairdii
ENSRNOG00000004735	Gzf1	100	74.616	ENSPCIG00000013803	GZF1	100	74.198	Phascolarctos_cinereus
ENSRNOG00000004735	Gzf1	87	48.124	ENSPFOG00000002393	GZF1	100	47.145	Poecilia_formosa
ENSRNOG00000004735	Gzf1	87	45.946	ENSPLAG00000005232	GZF1	93	46.264	Poecilia_latipinna
ENSRNOG00000004735	Gzf1	88	41.206	ENSPMEG00000020017	-	70	41.206	Poecilia_mexicana
ENSRNOG00000004735	Gzf1	89	36.760	ENSPREG00000016398	GZF1	72	42.789	Poecilia_reticulata
ENSRNOG00000004735	Gzf1	100	82.301	ENSPPYG00000010766	GZF1	72	82.301	Pongo_abelii
ENSRNOG00000004735	Gzf1	82	81.959	ENSPCAG00000007544	GZF1	99	81.271	Procavia_capensis
ENSRNOG00000004735	Gzf1	100	82.560	ENSPCOG00000024180	GZF1	100	82.841	Propithecus_coquereli
ENSRNOG00000004735	Gzf1	100	80.282	ENSPVAG00000014056	GZF1	100	80.282	Pteropus_vampyrus
ENSRNOG00000004735	Gzf1	54	45.817	ENSPNYG00000000788	-	63	45.817	Pundamilia_nyererei
ENSRNOG00000004735	Gzf1	100	81.844	ENSRBIG00000028715	GZF1	100	81.844	Rhinopithecus_bieti
ENSRNOG00000004735	Gzf1	100	82.073	ENSRROG00000030533	GZF1	100	82.073	Rhinopithecus_roxellana
ENSRNOG00000004735	Gzf1	100	79.944	ENSSBOG00000018893	GZF1	100	80.084	Saimiri_boliviensis_boliviensis
ENSRNOG00000004735	Gzf1	100	74.262	ENSSHAG00000009367	GZF1	100	74.022	Sarcophilus_harrisii
ENSRNOG00000004735	Gzf1	99	46.309	ENSSFOG00015008631	gzf1	83	45.541	Scleropages_formosus
ENSRNOG00000004735	Gzf1	96	46.025	ENSSDUG00000008186	GZF1	81	45.125	Seriola_dumerili
ENSRNOG00000004735	Gzf1	96	46.067	ENSSLDG00000002382	GZF1	81	45.251	Seriola_lalandi_dorsalis
ENSRNOG00000004735	Gzf1	81	86.053	ENSSARG00000010285	GZF1	79	85.827	Sorex_araneus
ENSRNOG00000004735	Gzf1	99	62.769	ENSSPUG00000004147	GZF1	100	66.209	Sphenodon_punctatus
ENSRNOG00000004735	Gzf1	85	47.177	ENSSPAG00000011759	GZF1	75	46.703	Stegastes_partitus
ENSRNOG00000004735	Gzf1	85	74.388	ENSSSCG00000007117	GZF1	100	74.062	Sus_scrofa
ENSRNOG00000004735	Gzf1	87	46.463	ENSTNIG00000010722	GZF1	100	46.302	Tetraodon_nigroviridis
ENSRNOG00000004735	Gzf1	100	75.833	ENSTTRG00000011345	GZF1	100	75.833	Tursiops_truncatus
ENSRNOG00000004735	Gzf1	55	84.091	ENSUAMG00000021858	-	100	84.091	Ursus_americanus
ENSRNOG00000004735	Gzf1	100	78.522	ENSUMAG00000004065	GZF1	100	78.352	Ursus_maritimus
ENSRNOG00000004735	Gzf1	100	79.155	ENSVVUG00000012086	GZF1	100	79.155	Vulpes_vulpes
ENSRNOG00000004735	Gzf1	99	59.317	ENSXETG00000004510	gzf1	99	59.317	Xenopus_tropicalis
ENSRNOG00000004735	Gzf1	88	46.904	ENSXMAG00000023249	GZF1	74	46.345	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding	-	IEA	Function
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0001658	branching involved in ureteric bud morphogenesis	-	IEA	Process
GO:0001658	branching involved in ureteric bud morphogenesis	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	-	ISS	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISS	Process
GO:0046872	metal ion binding	-	IEA	Function