EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000004813 (Gene tree)
Gene ID: 362855
Gene Symbol: Rtcb
Alias: LOC362855|P55
Full Name: RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 19362 bases
Position: chr7:23913830-23933191
Accession: 1303261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000006570	RtcB	PF01139.17	1.2e-145	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000006570	-	1876	-	ENSRNOP00000006570	505 (aa)	-	Q6AYT3

Gene Model

Click here to download ENSRNOG00000004813's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000004813's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000004813	Rtcb	100	99.406	ENSG00000100220	RTCB	100	99.406	Homo_sapiens
ENSRNOG00000004813	Rtcb	100	94.653	ENSAPOG00000006040	rtcb	100	94.653	Acanthochromis_polyacanthus
ENSRNOG00000004813	Rtcb	100	99.208	ENSAMEG00000016152	RTCB	100	99.208	Ailuropoda_melanoleuca
ENSRNOG00000004813	Rtcb	100	90.297	ENSACIG00000009083	rtcb	100	90.297	Amphilophus_citrinellus
ENSRNOG00000004813	Rtcb	100	94.851	ENSAOCG00000005662	rtcb	100	95.435	Amphiprion_ocellaris
ENSRNOG00000004813	Rtcb	100	94.851	ENSAPEG00000024701	rtcb	100	94.851	Amphiprion_percula
ENSRNOG00000004813	Rtcb	96	89.733	ENSAPEG00000024653	rtcb	100	89.733	Amphiprion_percula
ENSRNOG00000004813	Rtcb	100	94.851	ENSATEG00000000618	rtcb	100	94.851	Anabas_testudineus
ENSRNOG00000004813	Rtcb	100	93.642	ENSACAG00000014817	RTCB	100	93.642	Anolis_carolinensis
ENSRNOG00000004813	Rtcb	100	63.241	ENSANAG00000023724	-	100	63.241	Aotus_nancymaae
ENSRNOG00000004813	Rtcb	100	83.762	ENSANAG00000018191	-	91	83.762	Aotus_nancymaae
ENSRNOG00000004813	Rtcb	100	93.267	ENSACLG00000008367	rtcb	100	94.130	Astatotilapia_calliptera
ENSRNOG00000004813	Rtcb	100	94.455	ENSAMXG00000042320	rtcb	100	94.455	Astyanax_mexicanus
ENSRNOG00000004813	Rtcb	100	99.010	ENSBTAG00000011070	RTCB	100	99.010	Bos_taurus
ENSRNOG00000004813	Rtcb	100	73.267	WBGene00008877	rtcb-1	100	73.267	Caenorhabditis_elegans
ENSRNOG00000004813	Rtcb	100	99.802	ENSCJAG00000006128	RTCB	100	99.802	Callithrix_jacchus
ENSRNOG00000004813	Rtcb	100	94.851	ENSCAFG00000010789	-	100	94.851	Canis_familiaris
ENSRNOG00000004813	Rtcb	100	99.208	ENSCAFG00000001785	RTCB	100	99.208	Canis_familiaris
ENSRNOG00000004813	Rtcb	100	99.208	ENSCAFG00020004890	-	100	99.208	Canis_lupus_dingo
ENSRNOG00000004813	Rtcb	87	95.455	ENSCAFG00020018953	-	99	95.455	Canis_lupus_dingo
ENSRNOG00000004813	Rtcb	100	99.208	ENSCHIG00000027009	-	100	99.208	Capra_hircus
ENSRNOG00000004813	Rtcb	100	99.406	ENSTSYG00000012320	RTCB	100	99.406	Carlito_syrichta
ENSRNOG00000004813	Rtcb	94	98.952	ENSCAPG00000011647	RTCB	96	98.952	Cavia_aperea
ENSRNOG00000004813	Rtcb	100	99.802	ENSCCAG00000000618	RTCB	100	99.802	Cebus_capucinus
ENSRNOG00000004813	Rtcb	100	99.010	ENSCATG00000033424	RTCB	100	99.010	Cercocebus_atys
ENSRNOG00000004813	Rtcb	100	98.812	ENSCLAG00000007997	RTCB	100	98.812	Chinchilla_lanigera
ENSRNOG00000004813	Rtcb	100	99.208	ENSCSAG00000008351	RTCB	100	99.208	Chlorocebus_sabaeus
ENSRNOG00000004813	Rtcb	100	84.950	ENSCHOG00000009123	RTCB	100	84.950	Choloepus_hoffmanni
ENSRNOG00000004813	Rtcb	100	96.634	ENSCPBG00000023184	RTCB	100	96.634	Chrysemys_picta_bellii
ENSRNOG00000004813	Rtcb	100	81.584	ENSCING00000003830	-	100	81.584	Ciona_intestinalis
ENSRNOG00000004813	Rtcb	100	81.980	ENSCSAVG00000008124	-	99	81.980	Ciona_savignyi
ENSRNOG00000004813	Rtcb	100	95.248	ENSCANG00000001891	RTCB	100	95.248	Colobus_angolensis_palliatus
ENSRNOG00000004813	Rtcb	100	99.604	ENSCGRG00001011173	Rtcb	100	99.604	Cricetulus_griseus_chok1gshd
ENSRNOG00000004813	Rtcb	93	99.788	ENSCGRG00000009587	-	96	99.788	Cricetulus_griseus_crigri
ENSRNOG00000004813	Rtcb	100	93.861	ENSCSEG00000003986	rtcb	100	93.861	Cynoglossus_semilaevis
ENSRNOG00000004813	Rtcb	82	93.269	ENSCVAG00000000569	rtcb	95	93.269	Cyprinodon_variegatus
ENSRNOG00000004813	Rtcb	100	94.059	ENSDARG00000101047	rtcb	100	94.059	Danio_rerio
ENSRNOG00000004813	Rtcb	80	96.560	ENSDNOG00000012425	RTCB	99	96.560	Dasypus_novemcinctus
ENSRNOG00000004813	Rtcb	100	98.812	ENSDORG00000010855	Rtcb	100	98.812	Dipodomys_ordii
ENSRNOG00000004813	Rtcb	99	85.288	FBgn0032781	RtcB	99	85.288	Drosophila_melanogaster
ENSRNOG00000004813	Rtcb	100	92.475	ENSETEG00000001988	RTCB	100	92.475	Echinops_telfairi
ENSRNOG00000004813	Rtcb	100	85.347	ENSEBUG00000014235	rtcb	100	85.347	Eptatretus_burgeri
ENSRNOG00000004813	Rtcb	100	99.604	ENSEASG00005019059	RTCB	100	99.604	Equus_asinus_asinus
ENSRNOG00000004813	Rtcb	100	99.604	ENSECAG00000023998	RTCB	100	99.604	Equus_caballus
ENSRNOG00000004813	Rtcb	89	89.933	ENSEEUG00000006251	RTCB	100	89.933	Erinaceus_europaeus
ENSRNOG00000004813	Rtcb	100	82.798	ENSELUG00000009275	rtcb	100	82.798	Esox_lucius
ENSRNOG00000004813	Rtcb	100	99.406	ENSFCAG00000026480	RTCB	100	99.406	Felis_catus
ENSRNOG00000004813	Rtcb	100	97.624	ENSFALG00000013334	RTCB	100	97.624	Ficedula_albicollis
ENSRNOG00000004813	Rtcb	100	99.208	ENSFDAG00000018150	RTCB	100	99.208	Fukomys_damarensis
ENSRNOG00000004813	Rtcb	100	94.059	ENSFHEG00000009595	rtcb	100	94.059	Fundulus_heteroclitus
ENSRNOG00000004813	Rtcb	100	91.485	ENSGMOG00000018882	rtcb	100	91.485	Gadus_morhua
ENSRNOG00000004813	Rtcb	100	97.426	ENSGALG00000012611	RTCB	100	97.426	Gallus_gallus
ENSRNOG00000004813	Rtcb	100	94.455	ENSGAFG00000004198	rtcb	100	94.455	Gambusia_affinis
ENSRNOG00000004813	Rtcb	100	93.861	ENSGACG00000000586	rtcb	100	93.861	Gasterosteus_aculeatus
ENSRNOG00000004813	Rtcb	93	95.957	ENSGAGG00000019133	RTCB	98	95.957	Gopherus_agassizii
ENSRNOG00000004813	Rtcb	100	99.406	ENSGGOG00000011402	RTCB	100	99.406	Gorilla_gorilla
ENSRNOG00000004813	Rtcb	100	93.267	ENSHBUG00000020571	rtcb	100	93.267	Haplochromis_burtoni
ENSRNOG00000004813	Rtcb	93	70.551	ENSHGLG00000001066	-	99	70.551	Heterocephalus_glaber_female
ENSRNOG00000004813	Rtcb	100	99.208	ENSHGLG00000004492	RTCB	100	99.208	Heterocephalus_glaber_female
ENSRNOG00000004813	Rtcb	100	99.208	ENSHGLG00100008965	RTCB	100	99.208	Heterocephalus_glaber_male
ENSRNOG00000004813	Rtcb	100	91.913	ENSHCOG00000006450	rtcb	100	91.913	Hippocampus_comes
ENSRNOG00000004813	Rtcb	100	94.653	ENSIPUG00000015443	rtcb	100	94.653	Ictalurus_punctatus
ENSRNOG00000004813	Rtcb	100	99.208	ENSSTOG00000003878	RTCB	100	99.208	Ictidomys_tridecemlineatus
ENSRNOG00000004813	Rtcb	100	99.208	ENSJJAG00000010667	Rtcb	100	99.208	Jaculus_jaculus
ENSRNOG00000004813	Rtcb	100	94.059	ENSKMAG00000013178	rtcb	100	94.059	Kryptolebias_marmoratus
ENSRNOG00000004813	Rtcb	100	93.267	ENSLBEG00000000214	rtcb	100	93.267	Labrus_bergylta
ENSRNOG00000004813	Rtcb	100	94.257	ENSLBEG00000010566	RTCB	100	94.257	Labrus_bergylta
ENSRNOG00000004813	Rtcb	100	95.446	ENSLACG00000013033	RTCB	100	95.446	Latimeria_chalumnae
ENSRNOG00000004813	Rtcb	100	94.653	ENSLOCG00000016515	rtcb	99	94.653	Lepisosteus_oculatus
ENSRNOG00000004813	Rtcb	100	99.010	ENSLAFG00000002082	RTCB	100	99.010	Loxodonta_africana
ENSRNOG00000004813	Rtcb	100	99.208	ENSMFAG00000034419	RTCB	100	99.208	Macaca_fascicularis
ENSRNOG00000004813	Rtcb	100	99.208	ENSMMUG00000006720	RTCB	100	99.208	Macaca_mulatta
ENSRNOG00000004813	Rtcb	100	99.208	ENSMNEG00000040669	RTCB	100	99.208	Macaca_nemestrina
ENSRNOG00000004813	Rtcb	100	99.010	ENSMLEG00000040505	RTCB	100	99.010	Mandrillus_leucophaeus
ENSRNOG00000004813	Rtcb	100	94.455	ENSMAMG00000020676	rtcb	100	94.455	Mastacembelus_armatus
ENSRNOG00000004813	Rtcb	100	93.267	ENSMZEG00005018942	rtcb	100	93.267	Maylandia_zebra
ENSRNOG00000004813	Rtcb	100	97.041	ENSMGAG00000012805	RTCB	100	97.041	Meleagris_gallopavo
ENSRNOG00000004813	Rtcb	60	100.000	ENSMAUG00000008301	Rtcb	100	100.000	Mesocricetus_auratus
ENSRNOG00000004813	Rtcb	100	79.802	ENSMICG00000036677	-	100	79.802	Microcebus_murinus
ENSRNOG00000004813	Rtcb	100	99.604	ENSMICG00000013303	-	100	99.604	Microcebus_murinus
ENSRNOG00000004813	Rtcb	100	99.604	ENSMOCG00000002440	Rtcb	100	99.604	Microtus_ochrogaster
ENSRNOG00000004813	Rtcb	100	94.851	ENSMMOG00000005987	rtcb	100	94.851	Mola_mola
ENSRNOG00000004813	Rtcb	100	98.218	ENSMODG00000001414	RTCB	100	98.218	Monodelphis_domestica
ENSRNOG00000004813	Rtcb	100	94.653	ENSMALG00000007603	rtcb	100	94.653	Monopterus_albus
ENSRNOG00000004813	Rtcb	100	100.000	MGP_CAROLIEiJ_G0015689	Rtcb	100	100.000	Mus_caroli
ENSRNOG00000004813	Rtcb	100	100.000	ENSMUSG00000001783	Rtcb	100	100.000	Mus_musculus
ENSRNOG00000004813	Rtcb	100	100.000	MGP_PahariEiJ_G0031396	Rtcb	100	100.000	Mus_pahari
ENSRNOG00000004813	Rtcb	100	100.000	MGP_SPRETEiJ_G0016507	Rtcb	100	100.000	Mus_spretus
ENSRNOG00000004813	Rtcb	100	99.208	ENSMPUG00000012285	RTCB	100	99.208	Mustela_putorius_furo
ENSRNOG00000004813	Rtcb	100	96.844	ENSMLUG00000007803	RTCB	100	96.844	Myotis_lucifugus
ENSRNOG00000004813	Rtcb	75	100.000	ENSNGAG00000005093	Rtcb	100	100.000	Nannospalax_galili
ENSRNOG00000004813	Rtcb	100	93.465	ENSNBRG00000017202	rtcb	100	93.465	Neolamprologus_brichardi
ENSRNOG00000004813	Rtcb	100	99.406	ENSNLEG00000004960	RTCB	100	99.406	Nomascus_leucogenys
ENSRNOG00000004813	Rtcb	100	72.871	ENSMEUG00000007809	-	100	72.871	Notamacropus_eugenii
ENSRNOG00000004813	Rtcb	73	100.000	ENSOPRG00000003488	RTCB	79	100.000	Ochotona_princeps
ENSRNOG00000004813	Rtcb	100	65.149	ENSODEG00000005042	-	100	65.149	Octodon_degus
ENSRNOG00000004813	Rtcb	82	100.000	ENSODEG00000013033	-	100	100.000	Octodon_degus
ENSRNOG00000004813	Rtcb	100	94.455	ENSONIG00000007474	rtcb	100	94.455	Oreochromis_niloticus
ENSRNOG00000004813	Rtcb	100	98.218	ENSOANG00000005524	RTCB	100	98.218	Ornithorhynchus_anatinus
ENSRNOG00000004813	Rtcb	93	99.362	ENSOCUG00000008270	RTCB	96	99.362	Oryctolagus_cuniculus
ENSRNOG00000004813	Rtcb	100	93.465	ENSORLG00000020093	rtcb	100	93.465	Oryzias_latipes
ENSRNOG00000004813	Rtcb	100	93.465	ENSORLG00020003706	rtcb	100	93.465	Oryzias_latipes_hni
ENSRNOG00000004813	Rtcb	100	93.663	ENSORLG00015002968	rtcb	100	93.663	Oryzias_latipes_hsok
ENSRNOG00000004813	Rtcb	100	93.267	ENSOMEG00000021278	rtcb	100	93.267	Oryzias_melastigma
ENSRNOG00000004813	Rtcb	100	99.010	ENSOGAG00000001425	RTCB	100	99.010	Otolemur_garnettii
ENSRNOG00000004813	Rtcb	100	99.208	ENSOARG00000018008	RTCB	100	99.208	Ovis_aries
ENSRNOG00000004813	Rtcb	100	99.406	ENSPPAG00000028667	RTCB	100	99.406	Pan_paniscus
ENSRNOG00000004813	Rtcb	100	99.406	ENSPPRG00000004038	RTCB	100	99.406	Panthera_pardus
ENSRNOG00000004813	Rtcb	94	96.211	ENSPTIG00000020499	RTCB	97	96.211	Panthera_tigris_altaica
ENSRNOG00000004813	Rtcb	100	99.406	ENSPTRG00000014287	RTCB	100	99.406	Pan_troglodytes
ENSRNOG00000004813	Rtcb	100	99.208	ENSPANG00000016035	RTCB	100	99.208	Papio_anubis
ENSRNOG00000004813	Rtcb	100	93.069	ENSPKIG00000001881	rtcb	100	93.069	Paramormyrops_kingsleyae
ENSRNOG00000004813	Rtcb	91	98.043	ENSPSIG00000011690	RTCB	100	98.043	Pelodiscus_sinensis
ENSRNOG00000004813	Rtcb	100	94.653	ENSPMGG00000016672	rtcb	100	94.653	Periophthalmus_magnuspinnatus
ENSRNOG00000004813	Rtcb	100	100.000	ENSPEMG00000019548	Rtcb	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000004813	Rtcb	100	91.287	ENSPMAG00000005657	rtcb	100	91.287	Petromyzon_marinus
ENSRNOG00000004813	Rtcb	100	98.614	ENSPCIG00000009467	RTCB	100	98.614	Phascolarctos_cinereus
ENSRNOG00000004813	Rtcb	100	94.851	ENSPFOG00000003058	rtcb	100	94.851	Poecilia_formosa
ENSRNOG00000004813	Rtcb	100	94.653	ENSPLAG00000017663	rtcb	100	94.653	Poecilia_latipinna
ENSRNOG00000004813	Rtcb	100	94.851	ENSPMEG00000006227	rtcb	100	94.851	Poecilia_mexicana
ENSRNOG00000004813	Rtcb	100	94.653	ENSPREG00000018467	rtcb	100	94.653	Poecilia_reticulata
ENSRNOG00000004813	Rtcb	100	99.406	ENSPPYG00000011752	RTCB	100	99.406	Pongo_abelii
ENSRNOG00000004813	Rtcb	93	81.780	ENSPCAG00000013641	RTCB	100	81.780	Procavia_capensis
ENSRNOG00000004813	Rtcb	100	99.406	ENSPCOG00000017243	RTCB	100	99.406	Propithecus_coquereli
ENSRNOG00000004813	Rtcb	93	98.723	ENSPVAG00000002380	RTCB	100	98.723	Pteropus_vampyrus
ENSRNOG00000004813	Rtcb	100	93.267	ENSPNYG00000022760	rtcb	100	93.267	Pundamilia_nyererei
ENSRNOG00000004813	Rtcb	100	95.248	ENSPNAG00000009209	rtcb	100	95.248	Pygocentrus_nattereri
ENSRNOG00000004813	Rtcb	100	90.119	ENSRBIG00000042090	RTCB	100	90.119	Rhinopithecus_bieti
ENSRNOG00000004813	Rtcb	100	94.851	ENSSBOG00000020085	-	100	94.851	Saimiri_boliviensis_boliviensis
ENSRNOG00000004813	Rtcb	94	99.367	ENSSHAG00000016277	RTCB	100	99.367	Sarcophilus_harrisii
ENSRNOG00000004813	Rtcb	100	93.267	ENSSFOG00015000763	rtcb	100	93.267	Scleropages_formosus
ENSRNOG00000004813	Rtcb	100	93.861	ENSSFOG00015011572	RTCB	100	93.861	Scleropages_formosus
ENSRNOG00000004813	Rtcb	100	90.693	ENSSMAG00000005096	rtcb	100	90.693	Scophthalmus_maximus
ENSRNOG00000004813	Rtcb	100	93.861	ENSSDUG00000012605	rtcb	100	93.861	Seriola_dumerili
ENSRNOG00000004813	Rtcb	100	93.861	ENSSLDG00000019458	rtcb	100	93.861	Seriola_lalandi_dorsalis
ENSRNOG00000004813	Rtcb	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSRNOG00000004813	Rtcb	100	95.644	ENSSPUG00000012814	RTCB	100	95.644	Sphenodon_punctatus
ENSRNOG00000004813	Rtcb	100	94.851	ENSSPAG00000004623	rtcb	100	94.851	Stegastes_partitus
ENSRNOG00000004813	Rtcb	100	99.406	ENSSSCG00000000158	RTCB	100	99.406	Sus_scrofa
ENSRNOG00000004813	Rtcb	100	97.624	ENSTGUG00000010947	RTCB	99	97.624	Taeniopygia_guttata
ENSRNOG00000004813	Rtcb	91	95.435	ENSTRUG00000009880	rtcb	100	95.435	Takifugu_rubripes
ENSRNOG00000004813	Rtcb	100	93.465	ENSTNIG00000002484	rtcb	100	93.465	Tetraodon_nigroviridis
ENSRNOG00000004813	Rtcb	100	85.941	ENSTBEG00000004418	RTCB	100	85.941	Tupaia_belangeri
ENSRNOG00000004813	Rtcb	93	98.298	ENSTTRG00000006417	RTCB	100	98.298	Tursiops_truncatus
ENSRNOG00000004813	Rtcb	100	99.208	ENSUAMG00000022792	RTCB	100	99.208	Ursus_americanus
ENSRNOG00000004813	Rtcb	100	99.208	ENSUMAG00000017225	RTCB	100	99.208	Ursus_maritimus
ENSRNOG00000004813	Rtcb	100	99.208	ENSVPAG00000005375	RTCB	100	99.208	Vicugna_pacos
ENSRNOG00000004813	Rtcb	100	99.208	ENSVVUG00000023408	RTCB	100	99.509	Vulpes_vulpes
ENSRNOG00000004813	Rtcb	100	94.653	ENSXETG00000011523	rtcb	100	94.653	Xenopus_tropicalis
ENSRNOG00000004813	Rtcb	100	94.851	ENSXMAG00000002855	rtcb	100	94.851	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000971	tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	21873635.	IBA	Process
GO:0001701	in utero embryonic development	-	IEA	Process
GO:0001701	in utero embryonic development	-	ISO	Process
GO:0001890	placenta development	-	IEA	Process
GO:0001890	placenta development	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003972	RNA ligase (ATP) activity	21873635.	IBA	Function
GO:0003972	RNA ligase (ATP) activity	-	ISO	Function
GO:0003972	RNA ligase (ATP) activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005635	nuclear envelope	-	IEA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0005789	endoplasmic reticulum membrane	-	IEA	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	21873635.	IBA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISO	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0008150	biological_process	-	ND	Process
GO:0017166	vinculin binding	-	IEA	Function
GO:0017166	vinculin binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0072669	tRNA-splicing ligase complex	21873635.	IBA	Component
GO:0072669	tRNA-splicing ligase complex	-	ISO	Component
GO:0072669	tRNA-splicing ligase complex	-	ISS	Component